RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 HDGFL2Q7Z4V5 671 aaPredicted RBP18.41■□□□□ 0.54
USP3-204ENST00000540797 NPHP1O15259 732 aa18.39■□□□□ 0.53
USP3-204ENST00000540797 RAB3GAP2Q9H2M9 1393 aa18.39■□□□□ 0.53
USP3-204ENST00000540797 HSPA5P11021 654 aaKnown RBP18.38■□□□□ 0.53
USP3-204ENST00000540797 EID1Q9Y6B2 187 aa18.38■□□□□ 0.53
USP3-204ENST00000540797 PAK3O75914 559 aaPredicted RBP18.37■□□□□ 0.53
USP3-204ENST00000540797 ROCK2O75116 1388 aaKnown RBP18.36■□□□□ 0.53
USP3-204ENST00000540797 GAPVD1Q14C86 1478 aa18.36■□□□□ 0.53
USP3-204ENST00000540797 FGD5Q6ZNL6 1462 aa18.35■□□□□ 0.53
USP3-204ENST00000540797 FRAT1Q92837 279 aaPredicted RBP18.35■□□□□ 0.53
USP3-204ENST00000540797 NCAPD3P42695 1498 aa18.34■□□□□ 0.53
USP3-204ENST00000540797 NUTM2DQ5VT03 806 aaPredicted RBP18.32■□□□□ 0.52
USP3-204ENST00000540797 RAD54L2Q9Y4B4 1467 aa18.32■□□□□ 0.52
USP3-204ENST00000540797 RUSC2Q8N2Y8 1516 aa18.32■□□□□ 0.52
USP3-204ENST00000540797 SUPT16HQ9Y5B9 1047 aaKnown RBP18.3■□□□□ 0.52
USP3-204ENST00000540797 CHMP4BQ9H444 224 aaKnown RBP18.29■□□□□ 0.52
USP3-204ENST00000540797 EIF3AQ14152 1382 aaKnown RBP18.28■□□□□ 0.52
USP3-204ENST00000540797 RTF1Q92541 710 aaKnown RBP18.28■□□□□ 0.52
USP3-204ENST00000540797 CSB-PGBD3P0DP91 1061 aa18.27■□□□□ 0.52
USP3-204ENST00000540797 MS4A1P11836 297 aa18.27■□□□□ 0.52
USP3-204ENST00000540797 CASC1Q6TDU7 716 aa18.27■□□□□ 0.52
USP3-204ENST00000540797 IGF1RP08069 1367 aa18.27■□□□□ 0.51
USP3-204ENST00000540797 KTN1Q86UP2 1357 aaKnown RBP18.26■□□□□ 0.51
USP3-204ENST00000540797 OS9Q13438 667 aaPredicted RBP18.25■□□□□ 0.51
USP3-204ENST00000540797 AQRO60306 1485 aaKnown RBP eCLIP18.24■□□□□ 0.511e-6■■■■□ 20.3
USP3-204ENST00000540797 L3MBTL2Q969R5 705 aa18.23■□□□□ 0.51
USP3-204ENST00000540797 BECN1Q14457 450 aa18.22■□□□□ 0.51
USP3-204ENST00000540797 FAM69CQ0P6D2 419 aa18.21■□□□□ 0.51
USP3-204ENST00000540797 TERF2IPQ9NYB0 399 aa18.21■□□□□ 0.51
USP3-204ENST00000540797 NGDNQ8NEJ9 315 aaKnown RBP18.2■□□□□ 0.5
USP3-204ENST00000540797 U2AF1L5P0DN76 240 aaPredicted RBP18.2■□□□□ 0.5
USP3-204ENST00000540797 U2AF1Q01081 240 aaKnown RBP eCLIP18.2■□□□□ 0.58e-9■□□□□ 10.7
USP3-204ENST00000540797 EIF5BO60841 1220 aaKnown RBP18.18■□□□□ 0.5
USP3-204ENST00000540797 DDRGK1Q96HY6 314 aa18.16■□□□□ 0.5
USP3-204ENST00000540797 TRAK1Q9UPV9 953 aa18.16■□□□□ 0.5
USP3-204ENST00000540797 CCDC9Q9Y3X0 531 aaKnown RBP18.16■□□□□ 0.5
USP3-204ENST00000540797 CCDC144AA2RUR9 1427 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 NUTM2FA1L443 756 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 GOLGA2Q08379 1002 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 CCER2I3L3R5 266 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 RALBP1Q15311 655 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 RGS3P49796 1198 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 NBR1Q14596 966 aa18.15■□□□□ 0.5
USP3-204ENST00000540797 NCLP19338 710 aaKnown RBP18.13■□□□□ 0.49
USP3-204ENST00000540797 VGFO15240 615 aaPredicted RBP18.12■□□□□ 0.49
USP3-204ENST00000540797 CALD1Q05682 793 aaKnown RBP18.12■□□□□ 0.49
USP3-204ENST00000540797 GRIN2BQ13224 1484 aa18.11■□□□□ 0.49
USP3-204ENST00000540797 PPP4R2Q9NY27 417 aa18.11■□□□□ 0.49
USP3-204ENST00000540797 UACAQ9BZF9 1416 aa18.11■□□□□ 0.49
USP3-204ENST00000540797 ZNF330Q9Y3S2 320 aaPredicted RBP18.09■□□□□ 0.49
USP3-204ENST00000540797 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.08■□□□□ 0.499e-8■■■■□ 26.3
USP3-204ENST00000540797 AMPHP49418 695 aa18.08■□□□□ 0.48
USP3-204ENST00000540797 NESP48681 1621 aa18.08■□□□□ 0.48
USP3-204ENST00000540797 GOLGA6L22H0YM25 854 aa18.07■□□□□ 0.48
USP3-204ENST00000540797 MRC2Q9UBG0 1479 aa18.07■□□□□ 0.48
USP3-204ENST00000540797 CC2D2AQ9P2K1 1620 aa18.06■□□□□ 0.48
USP3-204ENST00000540797 IPO8O15397 1037 aaKnown RBP18.06■□□□□ 0.48
USP3-204ENST00000540797 KCNJ4P48050 445 aa18.06■□□□□ 0.48
USP3-204ENST00000540797 CFTRP13569 1480 aa18.05■□□□□ 0.48
USP3-204ENST00000540797 MYOM3Q5VTT5 1437 aa18.04■□□□□ 0.48
USP3-204ENST00000540797 FGD1P98174 961 aa18.04■□□□□ 0.48
USP3-204ENST00000540797 CDK11BP21127 795 aaKnown RBP18.04■□□□□ 0.48
USP3-204ENST00000540797 LTV1Q96GA3 475 aaPredicted RBP18.04■□□□□ 0.48
USP3-204ENST00000540797 CHMP4AQ9BY43 222 aa18.02■□□□□ 0.48
USP3-204ENST00000540797 ST20-MTHFSA0A0A6YYL1 179 aa18.02■□□□□ 0.47
USP3-204ENST00000540797 ZNF644Q9H582 1327 aaPredicted RBP18.01■□□□□ 0.47
USP3-204ENST00000540797 PRDM2Q13029 1718 aa18■□□□□ 0.47
USP3-204ENST00000540797 TAOK2Q9UL54 1235 aa18■□□□□ 0.47
USP3-204ENST00000540797 PRG4Q92954 1404 aaPredicted RBP18■□□□□ 0.47
USP3-204ENST00000540797 IFT140Q96RY7 1462 aa18■□□□□ 0.47
USP3-204ENST00000540797 STK31Q9BXU1 1019 aa17.99■□□□□ 0.47
USP3-204ENST00000540797 ZRSR1Q15695 479 aaKnown RBP17.99■□□□□ 0.47
USP3-204ENST00000540797 EVC2Q86UK5 1308 aa17.99■□□□□ 0.47
USP3-204ENST00000540797 B4GALNT3Q6L9W6 998 aa17.99■□□□□ 0.47
USP3-204ENST00000540797 MINK1Q8N4C8 1332 aaPredicted RBP17.98■□□□□ 0.47
USP3-204ENST00000540797 NAP1L2Q9ULW6 460 aaPredicted RBP17.97■□□□□ 0.47
USP3-204ENST00000540797 KIF15Q9NS87 1388 aa17.97■□□□□ 0.47
USP3-204ENST00000540797 NLRP13Q86W25 1043 aa17.97■□□□□ 0.47
USP3-204ENST00000540797 TPRNQ4KMQ1 711 aa17.96■□□□□ 0.47
USP3-204ENST00000540797 APBB1O00213 710 aa17.96■□□□□ 0.47
USP3-204ENST00000540797 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.95■□□□□ 0.46
USP3-204ENST00000540797 AEBP2Q6ZN18 517 aaPredicted RBP17.95■□□□□ 0.46
USP3-204ENST00000540797 CCDC146Q8IYE0 955 aa17.95■□□□□ 0.46
USP3-204ENST00000540797 COG3Q96JB2 828 aa17.95■□□□□ 0.46
USP3-204ENST00000540797 LMOD3Q0VAK6 560 aa17.95■□□□□ 0.46
USP3-204ENST00000540797 PANK3Q9H999 370 aa17.95■□□□□ 0.46
USP3-204ENST00000540797 DHX57Q6P158 1386 aaKnown RBP17.94■□□□□ 0.46
USP3-204ENST00000540797 ITPRIPQ8IWB1 547 aa17.94■□□□□ 0.46
USP3-204ENST00000540797 FGD6Q6ZV73 1430 aa17.94■□□□□ 0.46
USP3-204ENST00000540797 CUX1P39880 1505 aa17.94■□□□□ 0.46
USP3-204ENST00000540797 ANP32EQ9BTT0 268 aa17.94■□□□□ 0.46
USP3-204ENST00000540797 RCAN3Q9UKA8 241 aa17.93■□□□□ 0.46
USP3-204ENST00000540797 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
USP3-204ENST00000540797 SYNJ2O15056 1496 aa17.93■□□□□ 0.46
USP3-204ENST00000540797 TOPBP1Q92547 1522 aa17.91■□□□□ 0.46
USP3-204ENST00000540797 AFAP1Q8N556 730 aa17.91■□□□□ 0.46
USP3-204ENST00000540797 CGNL1Q0VF96 1302 aa17.91■□□□□ 0.46
USP3-204ENST00000540797 CASKIN1Q8WXD9 1431 aa17.91■□□□□ 0.46
USP3-204ENST00000540797 HSP90AB1P08238 724 aaKnown RBP17.91■□□□□ 0.46
USP3-204ENST00000540797 TMX4Q9H1E5 349 aaPredicted RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 231.5 ms