RNA–Protein interactions for RNA: ENST00000540574.5

PHC1-208, Transcript of polyhomeotic homolog 1, humanhuman

TSL 1 (best)

Gene PHC1, Length 3,869 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC1-208ENST00000540574 NBR1Q14596 966 aa13.33□□□□□ -0.28
PHC1-208ENST00000540574 ST20-MTHFSA0A0A6YYL1 179 aa13.32□□□□□ -0.28
PHC1-208ENST00000540574 BCL11AQ9H165 835 aa13.31□□□□□ -0.28
PHC1-208ENST00000540574 HFM1A2PYH4 1435 aa13.3□□□□□ -0.28
PHC1-208ENST00000540574 PRG4Q92954 1404 aaPredicted RBP13.3□□□□□ -0.28
PHC1-208ENST00000540574 KIF7Q2M1P5 1343 aa13.29□□□□□ -0.28
PHC1-208ENST00000540574 EFCAB5A4FU69 1503 aa13.28□□□□□ -0.28
PHC1-208ENST00000540574 ZNF608Q9ULD9 1512 aaPredicted RBP13.28□□□□□ -0.28
PHC1-208ENST00000540574 ANP32EQ9BTT0 268 aa13.27□□□□□ -0.28
PHC1-208ENST00000540574 CARMIL2Q6F5E8 1435 aa13.27□□□□□ -0.28
PHC1-208ENST00000540574 PPP4R2Q9NY27 417 aa13.27□□□□□ -0.29
PHC1-208ENST00000540574 ANKRD30AQ9BXX3 1397 aa13.27□□□□□ -0.29
PHC1-208ENST00000540574 TNNT2P45379 298 aaPredicted RBP13.25□□□□□ -0.29
PHC1-208ENST00000540574 DAXXQ9UER7 740 aaPredicted RBP13.25□□□□□ -0.29
PHC1-208ENST00000540574 EPRSP07814 1512 aaKnown RBP13.24□□□□□ -0.29
PHC1-208ENST00000540574 GRIN2BQ13224 1484 aa13.24□□□□□ -0.29
PHC1-208ENST00000540574 CCDC7Q96M83 1385 aa13.24□□□□□ -0.29
PHC1-208ENST00000540574 ROCK2O75116 1388 aaKnown RBP13.23□□□□□ -0.29
PHC1-208ENST00000540574 USP47Q96K76 1375 aa13.23□□□□□ -0.29
PHC1-208ENST00000540574 NEUROD2Q15784 382 aa13.22□□□□□ -0.29
PHC1-208ENST00000540574 WDR43Q15061 677 aaKnown RBP eCLIP13.22□□□□□ -0.29
PHC1-208ENST00000540574 SNAPC4Q5SXM2 1469 aa13.21□□□□□ -0.29
PHC1-208ENST00000540574 ANP32AP39687 249 aaKnown RBP13.21□□□□□ -0.29
PHC1-208ENST00000540574 CANXP27824 592 aaKnown RBP13.21□□□□□ -0.3
PHC1-208ENST00000540574 RTL5Q5HYW3 569 aaPredicted RBP13.21□□□□□ -0.3
PHC1-208ENST00000540574 MAP3K1Q13233 1512 aa13.2□□□□□ -0.3
PHC1-208ENST00000540574 PLPPR3Q6T4P5 718 aa13.2□□□□□ -0.3
PHC1-208ENST00000540574 PLB1Q6P1J6 1458 aa13.2□□□□□ -0.3
PHC1-208ENST00000540574 EHBP1L1Q8N3D4 1523 aa13.19□□□□□ -0.3
PHC1-208ENST00000540574 SUPT6HQ7KZ85 1726 aaKnown RBP13.19□□□□□ -0.3
PHC1-208ENST00000540574 PTPN23Q9H3S7 1636 aa13.18□□□□□ -0.3
PHC1-208ENST00000540574 NBPF1Q3BBV0 1214 aa13.18□□□□□ -0.3
PHC1-208ENST00000540574 KNSTRNQ9Y448 316 aa13.18□□□□□ -0.3
PHC1-208ENST00000540574 NPM1P06748 294 aaKnown RBP eCLIP13.17□□□□□ -0.3
PHC1-208ENST00000540574 PTPRGP23470 1445 aa13.17□□□□□ -0.3
PHC1-208ENST00000540574 LAMC3Q9Y6N6 1575 aa13.17□□□□□ -0.3
PHC1-208ENST00000540574 CUL7Q14999 1698 aa13.17□□□□□ -0.3
PHC1-208ENST00000540574 NUTM2DQ5VT03 806 aaPredicted RBP13.17□□□□□ -0.3
PHC1-208ENST00000540574 THOC2Q8NI27 1593 aaKnown RBP13.17□□□□□ -0.3
PHC1-208ENST00000540574 SAFB2Q14151 953 aaKnown RBP eCLIP13.16□□□□□ -0.3
PHC1-208ENST00000540574 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
PHC1-208ENST00000540574 DAPK1P53355 1430 aa13.16□□□□□ -0.3
PHC1-208ENST00000540574 ANKRD50Q9ULJ7 1429 aa13.16□□□□□ -0.3
PHC1-208ENST00000540574 PLIN1O60240 522 aa13.15□□□□□ -0.3
PHC1-208ENST00000540574 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.15□□□□□ -0.3
PHC1-208ENST00000540574 IQGAP2Q13576 1575 aa13.15□□□□□ -0.3
PHC1-208ENST00000540574 CNTLNQ9NXG0 1405 aa13.15□□□□□ -0.3
PHC1-208ENST00000540574 GGT6Q6P531 493 aa13.14□□□□□ -0.31
PHC1-208ENST00000540574 KIF15Q9NS87 1388 aa13.14□□□□□ -0.31
PHC1-208ENST00000540574 ABCC5O15440 1437 aa13.13□□□□□ -0.31
PHC1-208ENST00000540574 KIF3BO15066 747 aa13.13□□□□□ -0.31
PHC1-208ENST00000540574 PANK3Q9H999 370 aa13.13□□□□□ -0.31
PHC1-208ENST00000540574 TMF1P82094 1093 aa13.13□□□□□ -0.31
PHC1-208ENST00000540574 NUDCQ9Y266 331 aa13.12□□□□□ -0.31
PHC1-208ENST00000540574 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
PHC1-208ENST00000540574 AFAP1Q8N556 730 aa13.11□□□□□ -0.31
PHC1-208ENST00000540574 ANKRD30BQ9BXX2 1392 aa13.11□□□□□ -0.31
PHC1-208ENST00000540574 HECW1Q76N89 1606 aa13.11□□□□□ -0.31
PHC1-208ENST00000540574 CCDC146Q8IYE0 955 aa13.11□□□□□ -0.31
PHC1-208ENST00000540574 ZBED9Q6R2W3 1325 aa13.1□□□□□ -0.31
PHC1-208ENST00000540574 EFCAB2Q5VUJ9 269 aa13.1□□□□□ -0.31
PHC1-208ENST00000540574 MIA2Q96PC5 1412 aa13.1□□□□□ -0.31
PHC1-208ENST00000540574 TROQ12816 1431 aaPredicted RBP13.09□□□□□ -0.31
PHC1-208ENST00000540574 CCDC144AA2RUR9 1427 aa13.09□□□□□ -0.31
PHC1-208ENST00000540574 STAG3Q9UJ98 1225 aa13.09□□□□□ -0.31
PHC1-208ENST00000540574 CTTNBP2Q8WZ74 1663 aa13.09□□□□□ -0.31
PHC1-208ENST00000540574 AKNAQ7Z591 1439 aa13.09□□□□□ -0.31
PHC1-208ENST00000540574 RGS3P49796 1198 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 RCAN3Q9UKA8 241 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 ARHGEF11O15085 1522 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 KTN1Q86UP2 1357 aaKnown RBP13.08□□□□□ -0.32
PHC1-208ENST00000540574 CFAP43Q8NDM7 1665 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 MAGI3Q5TCQ9 1506 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 KIAA0586Q9BVV6 1533 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 KIF21AQ7Z4S6 1674 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 CDCA7LQ96GN5 454 aa13.08□□□□□ -0.32
PHC1-208ENST00000540574 LAS1LQ9Y4W2 734 aaKnown RBP13.08□□□□□ -0.32
PHC1-208ENST00000540574 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
PHC1-208ENST00000540574 EXOC6Q8TAG9 804 aa13.07□□□□□ -0.32
PHC1-208ENST00000540574 SPAG9O60271 1321 aaKnown RBP13.06□□□□□ -0.32
PHC1-208ENST00000540574 UGGT2Q9NYU1 1516 aa13.05□□□□□ -0.32
PHC1-208ENST00000540574 NLRP13Q86W25 1043 aa13.05□□□□□ -0.32
PHC1-208ENST00000540574 C9orf84Q5VXU9 1444 aa13.04□□□□□ -0.32
PHC1-208ENST00000540574 GRIN2AQ12879 1464 aa13.04□□□□□ -0.32
PHC1-208ENST00000540574 FRAT1Q92837 279 aaPredicted RBP13.04□□□□□ -0.32
PHC1-208ENST00000540574 PPM1GO15355 546 aaPredicted RBP13.04□□□□□ -0.32
PHC1-208ENST00000540574 STK26Q9P289 416 aa13.04□□□□□ -0.32
PHC1-208ENST00000540574 RALBP1Q15311 655 aa13.04□□□□□ -0.32
PHC1-208ENST00000540574 KIAA1107Q9UPP5 1409 aa13.04□□□□□ -0.32
PHC1-208ENST00000540574 NCOA1Q15788 1441 aa13.03□□□□□ -0.32
PHC1-208ENST00000540574 MYBBP1AQ9BQG0 1328 aaKnown RBP13.03□□□□□ -0.32
PHC1-208ENST00000540574 CAMSAP2Q08AD1 1489 aa13.03□□□□□ -0.32
PHC1-208ENST00000540574 NUP153P49790 1475 aaKnown RBP13.02□□□□□ -0.32
PHC1-208ENST00000540574 TRAK1Q9UPV9 953 aa13.02□□□□□ -0.33
PHC1-208ENST00000540574 SKAP1Q86WV1 359 aa13.01□□□□□ -0.33
PHC1-208ENST00000540574 KDM6BO15054 1643 aa13□□□□□ -0.33
PHC1-208ENST00000540574 PNISRQ8TF01 805 aaKnown RBP13□□□□□ -0.33
PHC1-208ENST00000540574 NOP58Q9Y2X3 529 aaKnown RBP13□□□□□ -0.33
PHC1-208ENST00000540574 MLECQ14165 292 aa13□□□□□ -0.33
PHC1-208ENST00000540574 RRP7AQ9Y3A4 280 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms