RNA–Protein interactions for RNA: ENST00000540415.1

LRP6-204, Transcript of LDL receptor related protein 6, humanhuman

TSL 5

Gene LRP6, Length 473 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-204ENST00000540415 ARHGEF12Q9NZN5 1544 aa13.66□□□□□ -0.22
LRP6-204ENST00000540415 FER1L4A9Z1Z3 1794 aa13.66□□□□□ -0.22
LRP6-204ENST00000540415 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
LRP6-204ENST00000540415 MAGI2Q86UL8 1455 aa13.65□□□□□ -0.22
LRP6-204ENST00000540415 CFAP74Q9C0B2 1584 aa13.64□□□□□ -0.23
LRP6-204ENST00000540415 CDK13Q14004 1512 aaKnown RBP13.64□□□□□ -0.23
LRP6-204ENST00000540415 ATP10AO60312 1499 aa13.62□□□□□ -0.23
LRP6-204ENST00000540415 SPATA31D1Q6ZQQ2 1576 aa13.62□□□□□ -0.23
LRP6-204ENST00000540415 STRCQ7RTU9 1775 aa13.61□□□□□ -0.23
LRP6-204ENST00000540415 PLCH2O75038 1416 aa13.61□□□□□ -0.23
LRP6-204ENST00000540415 C9orf84Q5VXU9 1444 aa13.61□□□□□ -0.23
LRP6-204ENST00000540415 PREX1Q8TCU6 1659 aa13.6□□□□□ -0.23
LRP6-204ENST00000540415 UHRF1BP1Q6BDS2 1440 aa13.58□□□□□ -0.24
LRP6-204ENST00000540415 DMRT2Q9Y5R5 561 aa13.58□□□□□ -0.24
LRP6-204ENST00000540415 AFAP1Q8N556 730 aa13.57□□□□□ -0.24
LRP6-204ENST00000540415 LTBP4Q8N2S1 1624 aa13.55□□□□□ -0.24
LRP6-204ENST00000540415 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
LRP6-204ENST00000540415 PTPRTO14522 1441 aa13.55□□□□□ -0.24
LRP6-204ENST00000540415 ATP1B4Q9UN42 357 aaPredicted RBP13.53□□□□□ -0.24
LRP6-204ENST00000540415 KIF14Q15058 1648 aa13.51□□□□□ -0.25
LRP6-204ENST00000540415 DIP2CQ9Y2E4 1556 aa13.51□□□□□ -0.25
LRP6-204ENST00000540415 MYT1LQ9UL68 1186 aa13.51□□□□□ -0.25
LRP6-204ENST00000540415 ZNF518AQ6AHZ1 1483 aa13.5□□□□□ -0.25
LRP6-204ENST00000540415 EHMT2Q96KQ7 1210 aa13.5□□□□□ -0.25
LRP6-204ENST00000540415 KDM5CP41229 1560 aa13.49□□□□□ -0.25
LRP6-204ENST00000540415 NCOA1Q15788 1441 aa13.49□□□□□ -0.25
LRP6-204ENST00000540415 C3P01024 1663 aa13.48□□□□□ -0.25
LRP6-204ENST00000540415 ABCA6Q8N139 1617 aa13.48□□□□□ -0.25
LRP6-204ENST00000540415 ARHGAP5Q13017 1502 aa13.48□□□□□ -0.25
LRP6-204ENST00000540415 TRAPPC8Q9Y2L5 1435 aa13.47□□□□□ -0.25
LRP6-204ENST00000540415 ZNF335Q9H4Z2 1342 aaPredicted RBP13.46□□□□□ -0.25
LRP6-204ENST00000540415 MYO5CQ9NQX4 1742 aa13.46□□□□□ -0.25
LRP6-204ENST00000540415 NCKAP5LQ9HCH0 1330 aa13.45□□□□□ -0.26
LRP6-204ENST00000540415 UBAP1LF5GYI3 381 aa13.45□□□□□ -0.26
LRP6-204ENST00000540415 TROQ12816 1431 aaPredicted RBP13.45□□□□□ -0.26
LRP6-204ENST00000540415 REREQ9P2R6 1566 aa13.45□□□□□ -0.26
LRP6-204ENST00000540415 IQSEC2Q5JU85 1478 aa13.44□□□□□ -0.26
LRP6-204ENST00000540415 MLH3Q9UHC1 1453 aa13.44□□□□□ -0.26
LRP6-204ENST00000540415 ESF1Q9H501 851 aaKnown RBP13.44□□□□□ -0.26
LRP6-204ENST00000540415 EEA1Q15075 1411 aa13.44□□□□□ -0.26
LRP6-204ENST00000540415 AGLP35573 1532 aa13.43□□□□□ -0.26
LRP6-204ENST00000540415 CAMSAP1Q5T5Y3 1602 aa13.42□□□□□ -0.26
LRP6-204ENST00000540415 ARHGAP35Q9NRY4 1499 aa13.42□□□□□ -0.26
LRP6-204ENST00000540415 CDK11AQ9UQ88 783 aaPredicted RBP13.41□□□□□ -0.26
LRP6-204ENST00000540415 SETD1BQ9UPS6 1966 aaKnown RBP13.41□□□□□ -0.26
LRP6-204ENST00000540415 FMN1Q68DA7 1419 aa13.4□□□□□ -0.26
LRP6-204ENST00000540415 ABCC1P33527 1531 aa13.39□□□□□ -0.27
LRP6-204ENST00000540415 ZMYM3Q14202 1370 aa13.38□□□□□ -0.27
LRP6-204ENST00000540415 CLIP1P30622 1438 aa13.38□□□□□ -0.27
LRP6-204ENST00000540415 CNTLNQ9NXG0 1405 aa13.38□□□□□ -0.27
LRP6-204ENST00000540415 CDC42BPBQ9Y5S2 1711 aa13.37□□□□□ -0.27
LRP6-204ENST00000540415 UBTFP17480 764 aaKnown RBP13.37□□□□□ -0.27
LRP6-204ENST00000540415 KIDINS220Q9ULH0 1771 aa13.36□□□□□ -0.27
LRP6-204ENST00000540415 NPATQ14207 1427 aa13.36□□□□□ -0.27
LRP6-204ENST00000540415 HSPA1LP34931 641 aa13.35□□□□□ -0.27
LRP6-204ENST00000540415 LRRIQ1Q96JM4 1722 aa13.35□□□□□ -0.27
LRP6-204ENST00000540415 ITSN2Q9NZM3 1697 aa13.34□□□□□ -0.27
LRP6-204ENST00000540415 PREX2Q70Z35 1606 aa13.34□□□□□ -0.27
LRP6-204ENST00000540415 ZNF777Q9ULD5 760 aaPredicted RBP13.33□□□□□ -0.28
LRP6-204ENST00000540415 TCOF1Q13428 1488 aaKnown RBP13.33□□□□□ -0.28
LRP6-204ENST00000540415 SCAF1Q9H7N4 1312 aaKnown RBP13.33□□□□□ -0.28
LRP6-204ENST00000540415 SAMD9LQ8IVG5 1584 aa13.32□□□□□ -0.28
LRP6-204ENST00000540415 PTPRKQ15262 1439 aa13.32□□□□□ -0.28
LRP6-204ENST00000540415 PIP4K2BP78356 416 aa13.32□□□□□ -0.28
LRP6-204ENST00000540415 PKD2Q13563 968 aa13.32□□□□□ -0.28
LRP6-204ENST00000540415 MED1Q15648 1581 aaPredicted RBP13.32□□□□□ -0.28
LRP6-204ENST00000540415 PLA2R1Q13018 1463 aa13.31□□□□□ -0.28
LRP6-204ENST00000540415 HNRNPMP52272 730 aaKnown RBP eCLIP13.31□□□□□ -0.28
LRP6-204ENST00000540415 PPP6R1Q9UPN7 881 aa13.31□□□□□ -0.28
LRP6-204ENST00000540415 MYO3AQ8NEV4 1616 aa13.31□□□□□ -0.28
LRP6-204ENST00000540415 SPAG9O60271 1321 aaKnown RBP13.3□□□□□ -0.28
LRP6-204ENST00000540415 SYCP2Q9BX26 1530 aa13.29□□□□□ -0.28
LRP6-204ENST00000540415 CEP170BQ9Y4F5 1589 aaPredicted RBP13.29□□□□□ -0.28
LRP6-204ENST00000540415 MROH2AA6NES4 1674 aa13.29□□□□□ -0.28
LRP6-204ENST00000540415 GGT6Q6P531 493 aa13.29□□□□□ -0.28
LRP6-204ENST00000540415 CLTCQ00610 1675 aaKnown RBP13.28□□□□□ -0.28
LRP6-204ENST00000540415 ZNF142P52746 1687 aaPredicted RBP13.28□□□□□ -0.28
LRP6-204ENST00000540415 SUPT6HQ7KZ85 1726 aaKnown RBP13.27□□□□□ -0.28
LRP6-204ENST00000540415 CDC42BPAQ5VT25 1732 aa13.26□□□□□ -0.29
LRP6-204ENST00000540415 PLXNC1O60486 1568 aa13.25□□□□□ -0.29
LRP6-204ENST00000540415 ATP7AQ04656 1500 aa13.25□□□□□ -0.29
LRP6-204ENST00000540415 GPATCH8Q9UKJ3 1502 aaKnown RBP13.25□□□□□ -0.29
LRP6-204ENST00000540415 A2MP01023 1474 aa13.25□□□□□ -0.29
LRP6-204ENST00000540415 CASKIN1Q8WXD9 1431 aa13.25□□□□□ -0.29
LRP6-204ENST00000540415 SENP3Q9H4L4 574 aaPredicted RBP13.24□□□□□ -0.29
LRP6-204ENST00000540415 A2ML1A8K2U0 1454 aa13.23□□□□□ -0.29
LRP6-204ENST00000540415 CCDC18Q5T9S5 1454 aa13.23□□□□□ -0.29
LRP6-204ENST00000540415 TOM1O60784 492 aa13.22□□□□□ -0.29
LRP6-204ENST00000540415 FBXO31Q5XUX0 539 aaPredicted RBP13.22□□□□□ -0.29
LRP6-204ENST00000540415 NEURL4Q96JN8 1562 aa13.22□□□□□ -0.29
LRP6-204ENST00000540415 INO80Q9ULG1 1556 aaPredicted RBP13.22□□□□□ -0.29
LRP6-204ENST00000540415 SHANK2Q9UPX8 1470 aa13.22□□□□□ -0.29
LRP6-204ENST00000540415 DNMT1P26358 1616 aaKnown RBP13.21□□□□□ -0.29
LRP6-204ENST00000540415 ALKQ9UM73 1620 aa13.21□□□□□ -0.29
LRP6-204ENST00000540415 PHF23Q9BUL5 403 aaPredicted RBP13.21□□□□□ -0.29
LRP6-204ENST00000540415 ZNF644Q9H582 1327 aaPredicted RBP13.2□□□□□ -0.3
LRP6-204ENST00000540415 CFDP1Q9UEE9 299 aaPredicted RBP13.2□□□□□ -0.3
LRP6-204ENST00000540415 KIAA1107Q9UPP5 1409 aa13.19□□□□□ -0.3
LRP6-204ENST00000540415 CPS1P31327 1500 aa13.18□□□□□ -0.3
LRP6-204ENST00000540415 VWDEQ8N2E2 1590 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms