RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PREX2Q70Z35 1606 aa9.54□□□□□ -0.88
USP28-206ENST00000538224 FBLN2P98095 1184 aa9.54□□□□□ -0.88
USP28-206ENST00000538224 GPATCH8Q9UKJ3 1502 aaKnown RBP9.53□□□□□ -0.88
USP28-206ENST00000538224 ARHGEF5Q12774 1597 aa9.53□□□□□ -0.88
USP28-206ENST00000538224 ABCC5O15440 1437 aa9.52□□□□□ -0.89
USP28-206ENST00000538224 PRG4Q92954 1404 aaPredicted RBP9.52□□□□□ -0.89
USP28-206ENST00000538224 KDM6BO15054 1643 aa9.52□□□□□ -0.89
USP28-206ENST00000538224 ABCC10Q5T3U5 1492 aa9.52□□□□□ -0.89
USP28-206ENST00000538224 ATP10BO94823 1461 aa9.51□□□□□ -0.89
USP28-206ENST00000538224 MYO5CQ9NQX4 1742 aa9.51□□□□□ -0.89
USP28-206ENST00000538224 CLASP1Q7Z460 1538 aa9.5□□□□□ -0.89
USP28-206ENST00000538224 ABCC2Q92887 1545 aa9.5□□□□□ -0.89
USP28-206ENST00000538224 PTPRGP23470 1445 aa9.49□□□□□ -0.89
USP28-206ENST00000538224 CDC42BPBQ9Y5S2 1711 aa9.48□□□□□ -0.89
USP28-206ENST00000538224 PLEKHD1A6NEE1 506 aa9.48□□□□□ -0.89
USP28-206ENST00000538224 NEUROD1Q13562 356 aa9.48□□□□□ -0.89
USP28-206ENST00000538224 CFDP1Q9UEE9 299 aaPredicted RBP9.48□□□□□ -0.89
USP28-206ENST00000538224 POLR1AO95602 1720 aaPredicted RBP9.48□□□□□ -0.89
USP28-206ENST00000538224 KDM5DQ9BY66 1539 aa9.47□□□□□ -0.89
USP28-206ENST00000538224 MAST1Q9Y2H9 1570 aa9.47□□□□□ -0.89
USP28-206ENST00000538224 PPP1R15AO75807 674 aaPredicted RBP9.47□□□□□ -0.89
USP28-206ENST00000538224 MIER1Q8N108 512 aa9.47□□□□□ -0.89
USP28-206ENST00000538224 SIN3AQ96ST3 1273 aa9.47□□□□□ -0.89
USP28-206ENST00000538224 ANKRD30AQ9BXX3 1397 aa9.47□□□□□ -0.89
USP28-206ENST00000538224 ARID3CA6NKF2 412 aa9.46□□□□□ -0.9
USP28-206ENST00000538224 RRP7BPQ9NSQ0 103 aa9.46□□□□□ -0.9
USP28-206ENST00000538224 DENND4BO75064 1496 aaPredicted RBP9.46□□□□□ -0.9
USP28-206ENST00000538224 KDM5BQ9UGL1 1544 aa9.46□□□□□ -0.9
USP28-206ENST00000538224 CHIC2Q9UKJ5 165 aa9.45□□□□□ -0.9
USP28-206ENST00000538224 NCOA1Q15788 1441 aa9.45□□□□□ -0.9
USP28-206ENST00000538224 UHRF1BP1LA0JNW5 1464 aa9.45□□□□□ -0.9
USP28-206ENST00000538224 RPRD2Q5VT52 1461 aaKnown RBP9.45□□□□□ -0.9
USP28-206ENST00000538224 CCDC141Q6ZP82 1450 aa9.45□□□□□ -0.9
USP28-206ENST00000538224 PLEKHH2Q8IVE3 1493 aa9.45□□□□□ -0.9
USP28-206ENST00000538224 SAMD9LQ8IVG5 1584 aa9.45□□□□□ -0.9
USP28-206ENST00000538224 ZCCHC11Q5TAX3 1644 aaKnown RBP9.45□□□□□ -0.9
USP28-206ENST00000538224 TRIM52Q96A61 297 aa9.44□□□□□ -0.9
USP28-206ENST00000538224 PLXNC1O60486 1568 aa9.44□□□□□ -0.9
USP28-206ENST00000538224 TTC37Q6PGP7 1564 aa9.43□□□□□ -0.9
USP28-206ENST00000538224 C9orf84Q5VXU9 1444 aa9.43□□□□□ -0.9
USP28-206ENST00000538224 PZPP20742 1482 aa9.42□□□□□ -0.9
USP28-206ENST00000538224 SCAF1Q9H7N4 1312 aaKnown RBP9.42□□□□□ -0.9
USP28-206ENST00000538224 MPHOSPH9Q99550 1183 aa9.42□□□□□ -0.9
USP28-206ENST00000538224 ARAP3Q8WWN8 1544 aa9.41□□□□□ -0.9
USP28-206ENST00000538224 ANKRD50Q9ULJ7 1429 aa9.41□□□□□ -0.9
USP28-206ENST00000538224 RSPH4AQ5TD94 716 aa9.41□□□□□ -0.9
USP28-206ENST00000538224 UNC13BO14795 1591 aa9.41□□□□□ -0.9
USP28-206ENST00000538224 ARHGAP5Q13017 1502 aa9.41□□□□□ -0.9
USP28-206ENST00000538224 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP28-206ENST00000538224 TEX14Q8IWB6 1497 aa9.4□□□□□ -0.9
USP28-206ENST00000538224 ANKRD30BQ9BXX2 1392 aa9.4□□□□□ -0.9
USP28-206ENST00000538224 ZNF644Q9H582 1327 aaPredicted RBP9.4□□□□□ -0.9
USP28-206ENST00000538224 KIAA1107Q9UPP5 1409 aa9.39□□□□□ -0.91
USP28-206ENST00000538224 ERCC6L2Q5T890 1561 aa9.39□□□□□ -0.91
USP28-206ENST00000538224 MBD5Q9P267 1494 aa9.39□□□□□ -0.91
USP28-206ENST00000538224 SYCP2Q9BX26 1530 aa9.38□□□□□ -0.91
USP28-206ENST00000538224 ARHGEF12Q9NZN5 1544 aa9.38□□□□□ -0.91
USP28-206ENST00000538224 TSPY4P0CV99 314 aa9.38□□□□□ -0.91
USP28-206ENST00000538224 TSPY10P0CW01 314 aa9.38□□□□□ -0.91
USP28-206ENST00000538224 YTHDC1Q96MU7 727 aaKnown RBP9.37□□□□□ -0.91
USP28-206ENST00000538224 SLC4A1APQ9BWU0 796 aaKnown RBP9.37□□□□□ -0.91
USP28-206ENST00000538224 ZNF777Q9ULD5 760 aaPredicted RBP9.37□□□□□ -0.91
USP28-206ENST00000538224 ABCC1P33527 1531 aa9.36□□□□□ -0.91
USP28-206ENST00000538224 IQGAP3Q86VI3 1631 aa9.36□□□□□ -0.91
USP28-206ENST00000538224 KIF15Q9NS87 1388 aa9.36□□□□□ -0.91
USP28-206ENST00000538224 DUOX2Q9NRD8 1548 aa9.36□□□□□ -0.91
USP28-206ENST00000538224 ERBINQ96RT1 1412 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 FAM135AQ9P2D6 1515 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 CCER2I3L3R5 266 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 EIF4G2P78344 907 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP28-206ENST00000538224 GTF3C3Q9Y5Q9 886 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 ABCA9Q8IUA7 1624 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 MAGI2Q86UL8 1455 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 CFAP74Q9C0B2 1584 aa9.33□□□□□ -0.92
USP28-206ENST00000538224 PLCH2O75038 1416 aa9.32□□□□□ -0.92
USP28-206ENST00000538224 ANP32CO43423 234 aa9.32□□□□□ -0.92
USP28-206ENST00000538224 UHRF1BP1Q6BDS2 1440 aa9.31□□□□□ -0.92
USP28-206ENST00000538224 DDX10Q13206 875 aaKnown RBP9.31□□□□□ -0.92
USP28-206ENST00000538224 L3MBTL2Q969R5 705 aa9.31□□□□□ -0.92
USP28-206ENST00000538224 NUP155O75694 1391 aa9.31□□□□□ -0.92
USP28-206ENST00000538224 EIF2AK4Q9P2K8 1649 aaKnown RBP9.31□□□□□ -0.92
USP28-206ENST00000538224 RALGAPBQ86X10 1494 aa9.3□□□□□ -0.92
USP28-206ENST00000538224 WDR7Q9Y4E6 1490 aa9.3□□□□□ -0.92
USP28-206ENST00000538224 LAMC1P11047 1609 aa9.3□□□□□ -0.92
USP28-206ENST00000538224 CNTLNQ9NXG0 1405 aa9.3□□□□□ -0.92
USP28-206ENST00000538224 KDM5CP41229 1560 aa9.29□□□□□ -0.92
USP28-206ENST00000538224 DEPDC5O75140 1603 aa9.29□□□□□ -0.92
USP28-206ENST00000538224 INO80Q9ULG1 1556 aaPredicted RBP9.29□□□□□ -0.92
USP28-206ENST00000538224 ZFYVE16Q7Z3T8 1539 aa9.28□□□□□ -0.92
USP28-206ENST00000538224 HSPA5P11021 654 aaKnown RBP9.28□□□□□ -0.92
USP28-206ENST00000538224 HNRNPMP52272 730 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP28-206ENST00000538224 PKD2Q13563 968 aa9.28□□□□□ -0.92
USP28-206ENST00000538224 EFCAB2Q5VUJ9 269 aa9.28□□□□□ -0.92
USP28-206ENST00000538224 RTEL1-TNFRSF6BF6WH68 1400 aa9.28□□□□□ -0.92
USP28-206ENST00000538224 SPATA31E1Q6ZUB1 1445 aa9.27□□□□□ -0.93
USP28-206ENST00000538224 ATP10AO60312 1499 aa9.27□□□□□ -0.93
USP28-206ENST00000538224 FOXD1Q16676 465 aa9.26□□□□□ -0.93
USP28-206ENST00000538224 TRPM1Q7Z4N2 1603 aa9.26□□□□□ -0.93
USP28-206ENST00000538224 ARID4BQ4LE39 1312 aaPredicted RBP9.26□□□□□ -0.93
USP28-206ENST00000538224 CCDC7Q96M83 1385 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms