RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 ARHGEF12Q9NZN5 1544 aa14.37□□□□□ -0.11
CLIP1-206ENST00000535290 PLEKHD1A6NEE1 506 aa14.37□□□□□ -0.11
CLIP1-206ENST00000535290 PTPRTO14522 1441 aa14.37□□□□□ -0.11
CLIP1-206ENST00000535290 NUP153P49790 1475 aaKnown RBP14.37□□□□□ -0.11
CLIP1-206ENST00000535290 PRXQ9BXM0 1461 aa14.37□□□□□ -0.11
CLIP1-206ENST00000535290 FER1L4A9Z1Z3 1794 aa14.37□□□□□ -0.11
CLIP1-206ENST00000535290 LTBP4Q8N2S1 1624 aa14.36□□□□□ -0.11
CLIP1-206ENST00000535290 PREX1Q8TCU6 1659 aa14.36□□□□□ -0.11
CLIP1-206ENST00000535290 UHRF1BP1Q6BDS2 1440 aa14.35□□□□□ -0.11
CLIP1-206ENST00000535290 HECW1Q76N89 1606 aa14.34□□□□□ -0.11
CLIP1-206ENST00000535290 RAPGEF6Q8TEU7 1601 aa14.33□□□□□ -0.11
CLIP1-206ENST00000535290 ATP10AO60312 1499 aa14.33□□□□□ -0.12
CLIP1-206ENST00000535290 SCAPERQ9BY12 1400 aa14.32□□□□□ -0.12
CLIP1-206ENST00000535290 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.32□□□□□ -0.12
CLIP1-206ENST00000535290 C9orf84Q5VXU9 1444 aa14.31□□□□□ -0.12
CLIP1-206ENST00000535290 IQSEC2Q5JU85 1478 aa14.31□□□□□ -0.12
CLIP1-206ENST00000535290 UBAP1LF5GYI3 381 aa14.29□□□□□ -0.12
CLIP1-206ENST00000535290 CFAP74Q9C0B2 1584 aa14.28□□□□□ -0.12
CLIP1-206ENST00000535290 SAMD9Q5K651 1589 aa14.27□□□□□ -0.12
CLIP1-206ENST00000535290 RANGAP1P46060 587 aaPredicted RBP14.27□□□□□ -0.13
CLIP1-206ENST00000535290 SETD1BQ9UPS6 1966 aaKnown RBP14.26□□□□□ -0.13
CLIP1-206ENST00000535290 PLCH2O75038 1416 aa14.24□□□□□ -0.13
CLIP1-206ENST00000535290 NCOA1Q15788 1441 aa14.24□□□□□ -0.13
CLIP1-206ENST00000535290 ZNF335Q9H4Z2 1342 aaPredicted RBP14.24□□□□□ -0.13
CLIP1-206ENST00000535290 AFAP1Q8N556 730 aa14.23□□□□□ -0.13
CLIP1-206ENST00000535290 EFCAB2Q5VUJ9 269 aa14.22□□□□□ -0.13
CLIP1-206ENST00000535290 TRAPPC8Q9Y2L5 1435 aa14.22□□□□□ -0.13
CLIP1-206ENST00000535290 MSH5O43196 834 aa14.21□□□□□ -0.13
CLIP1-206ENST00000535290 NCKAP5LQ9HCH0 1330 aa14.2□□□□□ -0.14
CLIP1-206ENST00000535290 HSPA1LP34931 641 aa14.19□□□□□ -0.14
CLIP1-206ENST00000535290 MYT1LQ9UL68 1186 aa14.19□□□□□ -0.14
CLIP1-206ENST00000535290 ESF1Q9H501 851 aaKnown RBP14.18□□□□□ -0.14
CLIP1-206ENST00000535290 PIAS4Q8N2W9 510 aaPredicted RBP14.17□□□□□ -0.14
CLIP1-206ENST00000535290 CDK13Q14004 1512 aaKnown RBP14.16□□□□□ -0.14
CLIP1-206ENST00000535290 MED1Q15648 1581 aaPredicted RBP14.16□□□□□ -0.14
CLIP1-206ENST00000535290 C3P01024 1663 aa14.16□□□□□ -0.14
CLIP1-206ENST00000535290 ZNF518AQ6AHZ1 1483 aa14.15□□□□□ -0.14
CLIP1-206ENST00000535290 CSRNP3Q8WYN3 585 aa14.15□□□□□ -0.14
CLIP1-206ENST00000535290 PPP6R1Q9UPN7 881 aa14.15□□□□□ -0.14
CLIP1-206ENST00000535290 CAMSAP1Q5T5Y3 1602 aa14.15□□□□□ -0.14
CLIP1-206ENST00000535290 SCAF1Q9H7N4 1312 aaKnown RBP14.14□□□□□ -0.15
CLIP1-206ENST00000535290 PIP4K2BP78356 416 aa14.13□□□□□ -0.15
CLIP1-206ENST00000535290 DIP2CQ9Y2E4 1556 aa14.13□□□□□ -0.15
CLIP1-206ENST00000535290 KDM5CP41229 1560 aa14.12□□□□□ -0.15
CLIP1-206ENST00000535290 REREQ9P2R6 1566 aa14.1□□□□□ -0.15
CLIP1-206ENST00000535290 PKD2Q13563 968 aa14.1□□□□□ -0.15
CLIP1-206ENST00000535290 AGLP35573 1532 aa14.1□□□□□ -0.15
CLIP1-206ENST00000535290 NPATQ14207 1427 aa14.09□□□□□ -0.15
CLIP1-206ENST00000535290 CNTLNQ9NXG0 1405 aa14.09□□□□□ -0.15
CLIP1-206ENST00000535290 ADRA2BP18089 450 aa14.09□□□□□ -0.15
CLIP1-206ENST00000535290 MLH3Q9UHC1 1453 aa14.09□□□□□ -0.15
CLIP1-206ENST00000535290 ZMYM3Q14202 1370 aa14.09□□□□□ -0.15
CLIP1-206ENST00000535290 ATP1B4Q9UN42 357 aaPredicted RBP14.08□□□□□ -0.16
CLIP1-206ENST00000535290 TOM1O60784 492 aa14.07□□□□□ -0.16
CLIP1-206ENST00000535290 ABCA6Q8N139 1617 aa14.07□□□□□ -0.16
CLIP1-206ENST00000535290 ARHGAP5Q13017 1502 aa14.06□□□□□ -0.16
CLIP1-206ENST00000535290 TCOF1Q13428 1488 aaKnown RBP14.06□□□□□ -0.16
CLIP1-206ENST00000535290 PLA2R1Q13018 1463 aa14.05□□□□□ -0.16
CLIP1-206ENST00000535290 CDK11AQ9UQ88 783 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-206ENST00000535290 KIF14Q15058 1648 aa14.04□□□□□ -0.16
CLIP1-206ENST00000535290 MYO5CQ9NQX4 1742 aa14.04□□□□□ -0.16
CLIP1-206ENST00000535290 TROQ12816 1431 aaPredicted RBP14□□□□□ -0.17
CLIP1-206ENST00000535290 PTPRKQ15262 1439 aa13.99□□□□□ -0.17
CLIP1-206ENST00000535290 RGS17Q9UGC6 210 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-206ENST00000535290 CEP170BQ9Y4F5 1589 aaPredicted RBP13.97□□□□□ -0.17
CLIP1-206ENST00000535290 SHANK2Q9UPX8 1470 aa13.96□□□□□ -0.17
CLIP1-206ENST00000535290 KIDINS220Q9ULH0 1771 aa13.96□□□□□ -0.18
CLIP1-206ENST00000535290 CPS1P31327 1500 aa13.95□□□□□ -0.18
CLIP1-206ENST00000535290 ABCC1P33527 1531 aa13.95□□□□□ -0.18
CLIP1-206ENST00000535290 MROH2AA6NES4 1674 aa13.95□□□□□ -0.18
CLIP1-206ENST00000535290 MYO3AQ8NEV4 1616 aa13.95□□□□□ -0.18
CLIP1-206ENST00000535290 CLIP1P30622 1438 aa13.95□□□□□ -0.18
CLIP1-206ENST00000535290 ALKQ9UM73 1620 aa13.94□□□□□ -0.18
CLIP1-206ENST00000535290 GGT6Q6P531 493 aa13.94□□□□□ -0.18
CLIP1-206ENST00000535290 ZNF142P52746 1687 aaPredicted RBP13.94□□□□□ -0.18
CLIP1-206ENST00000535290 FMN1Q68DA7 1419 aa13.93□□□□□ -0.18
CLIP1-206ENST00000535290 CDC42BPBQ9Y5S2 1711 aa13.93□□□□□ -0.18
CLIP1-206ENST00000535290 SPAG9O60271 1321 aaKnown RBP13.91□□□□□ -0.18
CLIP1-206ENST00000535290 A2ML1A8K2U0 1454 aa13.91□□□□□ -0.18
CLIP1-206ENST00000535290 ZNF777Q9ULD5 760 aaPredicted RBP13.9□□□□□ -0.18
CLIP1-206ENST00000535290 CLTCQ00610 1675 aaKnown RBP13.89□□□□□ -0.19
CLIP1-206ENST00000535290 ITSN2Q9NZM3 1697 aa13.89□□□□□ -0.19
CLIP1-206ENST00000535290 SAMD9LQ8IVG5 1584 aa13.89□□□□□ -0.19
CLIP1-206ENST00000535290 HNRNPMP52272 730 aaKnown RBP eCLIP13.89□□□□□ -0.19
CLIP1-206ENST00000535290 NEURL4Q96JN8 1562 aa13.88□□□□□ -0.19
CLIP1-206ENST00000535290 POTEAQ6S8J7 498 aa13.88□□□□□ -0.19
CLIP1-206ENST00000535290 DNMT1P26358 1616 aaKnown RBP13.88□□□□□ -0.19
CLIP1-206ENST00000535290 EEA1Q15075 1411 aa13.88□□□□□ -0.19
CLIP1-206ENST00000535290 ARHGAP35Q9NRY4 1499 aa13.87□□□□□ -0.19
CLIP1-206ENST00000535290 PREX2Q70Z35 1606 aa13.87□□□□□ -0.19
CLIP1-206ENST00000535290 FBXO31Q5XUX0 539 aaPredicted RBP13.87□□□□□ -0.19
CLIP1-206ENST00000535290 ANKLE2Q86XL3 938 aa13.87□□□□□ -0.19
CLIP1-206ENST00000535290 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
CLIP1-206ENST00000535290 VWDEQ8N2E2 1590 aa13.87□□□□□ -0.19
CLIP1-206ENST00000535290 SUPT6HQ7KZ85 1726 aaKnown RBP13.87□□□□□ -0.19
CLIP1-206ENST00000535290 A2MP01023 1474 aa13.86□□□□□ -0.19
CLIP1-206ENST00000535290 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.85□□□□□ -0.19
CLIP1-206ENST00000535290 PLXNC1O60486 1568 aa13.84□□□□□ -0.19
CLIP1-206ENST00000535290 TNRQ92752 1358 aa13.83□□□□□ -0.19
CLIP1-206ENST00000535290 UBTFP17480 764 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms