RNA–Protein interactions for RNA: ENST00000534143.5

CMTM1-220, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 781 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-220ENST00000534143 ABCC8Q09428 1581 aa10.39□□□□□ -0.75
CMTM1-220ENST00000534143 OTUD5Q96G74 571 aa10.37□□□□□ -0.75
CMTM1-220ENST00000534143 WRNQ14191 1432 aaPredicted RBP eCLIP10.34□□□□□ -0.75
CMTM1-220ENST00000534143 MAMSTRQ6ZN01 415 aa10.34□□□□□ -0.75
CMTM1-220ENST00000534143 CEP164Q9UPV0 1460 aa10.34□□□□□ -0.75
CMTM1-220ENST00000534143 ILDR1Q86SU0 546 aaPredicted RBP10.33□□□□□ -0.76
CMTM1-220ENST00000534143 PDCD7Q8N8D1 485 aaKnown RBP10.33□□□□□ -0.76
CMTM1-220ENST00000534143 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.33□□□□□ -0.76
CMTM1-220ENST00000534143 EFCAB3Q8N7B9 438 aa10.32□□□□□ -0.76
CMTM1-220ENST00000534143 PLSCR2Q9NRY7 297 aa10.32□□□□□ -0.76
CMTM1-220ENST00000534143 CUX1P39880 1505 aa10.32□□□□□ -0.76
CMTM1-220ENST00000534143 SYNJ1O43426 1573 aa10.31□□□□□ -0.76
CMTM1-220ENST00000534143 BCL11BQ9C0K0 894 aaPredicted RBP10.31□□□□□ -0.76
CMTM1-220ENST00000534143 BIVM-ERCC5R4GMW8 1640 aa10.31□□□□□ -0.76
CMTM1-220ENST00000534143 TOP2BQ02880 1626 aa10.3□□□□□ -0.76
CMTM1-220ENST00000534143 SCUBE2Q9NQ36 999 aa10.3□□□□□ -0.76
CMTM1-220ENST00000534143 STK25O00506 426 aa10.29□□□□□ -0.76
CMTM1-220ENST00000534143 URB2Q14146 1524 aaKnown RBP10.28□□□□□ -0.76
CMTM1-220ENST00000534143 DNMBPQ6XZF7 1577 aa10.28□□□□□ -0.76
CMTM1-220ENST00000534143 SOX12O15370 315 aa10.28□□□□□ -0.76
CMTM1-220ENST00000534143 STK24Q9Y6E0 443 aa10.28□□□□□ -0.76
CMTM1-220ENST00000534143 TOPBP1Q92547 1522 aa10.28□□□□□ -0.76
CMTM1-220ENST00000534143 MRC2Q9UBG0 1479 aa10.27□□□□□ -0.77
CMTM1-220ENST00000534143 WDR62O43379 1518 aa10.26□□□□□ -0.77
CMTM1-220ENST00000534143 L3MBTL3Q96JM7 780 aaPredicted RBP10.25□□□□□ -0.77
CMTM1-220ENST00000534143 DPY19L2Q6NUT2 758 aa10.24□□□□□ -0.77
CMTM1-220ENST00000534143 FGD5Q6ZNL6 1462 aa10.23□□□□□ -0.77
CMTM1-220ENST00000534143 PHF8Q9UPP1 1060 aa10.21□□□□□ -0.77
CMTM1-220ENST00000534143 POLA1P09884 1462 aaPredicted RBP10.2□□□□□ -0.78
CMTM1-220ENST00000534143 HS6ST3Q8IZP7 471 aa10.19□□□□□ -0.78
CMTM1-220ENST00000534143 NLRP6P59044 892 aa10.18□□□□□ -0.78
CMTM1-220ENST00000534143 MS4A4AQ96JQ5 239 aa10.18□□□□□ -0.78
CMTM1-220ENST00000534143 BOLA1Q9Y3E2 137 aa10.18□□□□□ -0.78
CMTM1-220ENST00000534143 SOGA1O94964 1423 aa10.17□□□□□ -0.78
CMTM1-220ENST00000534143 FBXO22Q8NEZ5 403 aa10.17□□□□□ -0.78
CMTM1-220ENST00000534143 MFRPQ9BY79 579 aa10.17□□□□□ -0.78
CMTM1-220ENST00000534143 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.17□□□□□ -0.78
CMTM1-220ENST00000534143 RAD54L2Q9Y4B4 1467 aa10.17□□□□□ -0.78
CMTM1-220ENST00000534143 AMER1Q5JTC6 1135 aaPredicted RBP10.16□□□□□ -0.78
CMTM1-220ENST00000534143 SLAIN1Q8ND83 568 aa10.16□□□□□ -0.78
CMTM1-220ENST00000534143 POTEMA6NI47 508 aa10.15□□□□□ -0.78
CMTM1-220ENST00000534143 G3V3G9 751 aa10.15□□□□□ -0.78
CMTM1-220ENST00000534143 CHGAP10645 457 aaKnown RBP10.15□□□□□ -0.78
CMTM1-220ENST00000534143 TARBP1Q13395 1621 aaKnown RBP10.15□□□□□ -0.79
CMTM1-220ENST00000534143 RUSC2Q8N2Y8 1516 aa10.14□□□□□ -0.79
CMTM1-220ENST00000534143 ABCA10Q8WWZ4 1543 aa10.14□□□□□ -0.79
CMTM1-220ENST00000534143 C3orf67Q6ZVT6 689 aa10.14□□□□□ -0.79
CMTM1-220ENST00000534143 TMEM121BQ9BXQ6 578 aaPredicted RBP10.14□□□□□ -0.79
CMTM1-220ENST00000534143 WDR97A6NE52 1622 aa10.14□□□□□ -0.79
CMTM1-220ENST00000534143 IFT140Q96RY7 1462 aa10.12□□□□□ -0.79
CMTM1-220ENST00000534143 POTEGQ6S5H5 508 aa10.12□□□□□ -0.79
CMTM1-220ENST00000534143 EEA1Q15075 1411 aa10.12□□□□□ -0.79
CMTM1-220ENST00000534143 KIF27Q86VH2 1401 aa10.1□□□□□ -0.79
CMTM1-220ENST00000534143 MICALL2Q8IY33 904 aa10.09□□□□□ -0.79
CMTM1-220ENST00000534143 FAM9AQ8IZU1 332 aaPredicted RBP10.09□□□□□ -0.79
CMTM1-220ENST00000534143 RTN4Q9NQC3 1192 aaKnown RBP10.09□□□□□ -0.79
CMTM1-220ENST00000534143 ABCA5Q8WWZ7 1642 aa10.07□□□□□ -0.8
CMTM1-220ENST00000534143 TDRD9Q8NDG6 1382 aaKnown RBP10.07□□□□□ -0.8
CMTM1-220ENST00000534143 PCDH10Q9P2E7 1040 aa10.07□□□□□ -0.8
CMTM1-220ENST00000534143 ZNF608Q9ULD9 1512 aaPredicted RBP10.06□□□□□ -0.8
CMTM1-220ENST00000534143 GAPVD1Q14C86 1478 aa10.05□□□□□ -0.8
CMTM1-220ENST00000534143 IGF1RP08069 1367 aa10.05□□□□□ -0.8
CMTM1-220ENST00000534143 AQRO60306 1485 aaKnown RBP eCLIP10.04□□□□□ -0.8
CMTM1-220ENST00000534143 NKX1-1Q15270 411 aaPredicted RBP10.04□□□□□ -0.8
CMTM1-220ENST00000534143 FAM163AQ96GL9 167 aaPredicted RBP10.03□□□□□ -0.8
CMTM1-220ENST00000534143 ERICH3Q5RHP9 1530 aa10.02□□□□□ -0.8
CMTM1-220ENST00000534143 EIF4G3O43432 1585 aaKnown RBP10.02□□□□□ -0.81
CMTM1-220ENST00000534143 PBRM1Q86U86 1689 aa10.02□□□□□ -0.81
CMTM1-220ENST00000534143 SNPHO15079 494 aa10.01□□□□□ -0.81
CMTM1-220ENST00000534143 PPP1R37O75864 691 aa10.01□□□□□ -0.81
CMTM1-220ENST00000534143 PRXQ9BXM0 1461 aa10.01□□□□□ -0.81
CMTM1-220ENST00000534143 GRIN2BQ13224 1484 aa10□□□□□ -0.81
CMTM1-220ENST00000534143 LCE2DQ5TA82 110 aaPredicted RBP10□□□□□ -0.81
CMTM1-220ENST00000534143 TMEM92Q6UXU6 159 aa10□□□□□ -0.81
CMTM1-220ENST00000534143 KIF21BO75037 1637 aa10□□□□□ -0.81
CMTM1-220ENST00000534143 LOC105371045A0A1W2PR82 267 aa9.99□□□□□ -0.81
CMTM1-220ENST00000534143 CARMIL1Q5VZK9 1371 aa9.99□□□□□ -0.81
CMTM1-220ENST00000534143 RYDENQ9NUL5 291 aaKnown RBP9.98□□□□□ -0.81
CMTM1-220ENST00000534143 CUL7Q14999 1698 aa9.98□□□□□ -0.81
CMTM1-220ENST00000534143 CHD1O14646 1710 aa9.98□□□□□ -0.81
CMTM1-220ENST00000534143 RIMBP3CA6NJZ7 1639 aa9.96□□□□□ -0.81
CMTM1-220ENST00000534143 RIMBP3BA6NNM3 1639 aa9.96□□□□□ -0.81
CMTM1-220ENST00000534143 RIMBP3Q9UFD9 1639 aa9.96□□□□□ -0.81
CMTM1-220ENST00000534143 RAPGEF2Q9Y4G8 1499 aa9.96□□□□□ -0.82
CMTM1-220ENST00000534143 ST18O60284 1047 aa9.95□□□□□ -0.82
CMTM1-220ENST00000534143 FHAD1B1AJZ9 1412 aa9.95□□□□□ -0.82
CMTM1-220ENST00000534143 GOLGA3Q08378 1498 aa9.95□□□□□ -0.82
CMTM1-220ENST00000534143 SNAPC4Q5SXM2 1469 aa9.95□□□□□ -0.82
CMTM1-220ENST00000534143 MAGI1Q96QZ7 1491 aaPredicted RBP9.95□□□□□ -0.82
CMTM1-220ENST00000534143 ADAMTS12P58397 1594 aa9.95□□□□□ -0.82
CMTM1-220ENST00000534143 GTPBP6O43824 516 aaPredicted RBP9.93□□□□□ -0.82
CMTM1-220ENST00000534143 TNIKQ9UKE5 1360 aa9.91□□□□□ -0.82
CMTM1-220ENST00000534143 KIF3CO14782 793 aa9.91□□□□□ -0.82
CMTM1-220ENST00000534143 HOXB3P14651 431 aaPredicted RBP9.91□□□□□ -0.82
CMTM1-220ENST00000534143 ARHGEF11O15085 1522 aa9.9□□□□□ -0.82
CMTM1-220ENST00000534143 SYNJ2O15056 1496 aa9.9□□□□□ -0.83
CMTM1-220ENST00000534143 UBTFP17480 764 aaKnown RBP9.89□□□□□ -0.83
CMTM1-220ENST00000534143 BBXQ8WY36 941 aaPredicted RBP9.89□□□□□ -0.83
CMTM1-220ENST00000534143 GRIN2AQ12879 1464 aa9.88□□□□□ -0.83
CMTM1-220ENST00000534143 C2orf72A6NCS6 295 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms