RNA–Protein interactions for RNA: ENST00000533730.5

CASP4-212, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 1,214 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-212ENST00000533730 BCL11BQ9C0K0 894 aaPredicted RBP13.17□□□□□ -0.3
CASP4-212ENST00000533730 TTLL13PA6NNM8 815 aa13.16□□□□□ -0.3
CASP4-212ENST00000533730 DNAJC5Q9H3Z4 198 aa13.16□□□□□ -0.3
CASP4-212ENST00000533730 TMEM106CQ9BVX2 250 aa13.15□□□□□ -0.3
CASP4-212ENST00000533730 IFT140Q96RY7 1462 aa13.15□□□□□ -0.3
CASP4-212ENST00000533730 ASTLQ6HA08 431 aaPredicted RBP13.13□□□□□ -0.31
CASP4-212ENST00000533730 CUX1P39880 1505 aa13.13□□□□□ -0.31
CASP4-212ENST00000533730 ATMINO43313 823 aaPredicted RBP13.12□□□□□ -0.31
CASP4-212ENST00000533730 STK24Q9Y6E0 443 aa13.12□□□□□ -0.31
CASP4-212ENST00000533730 POTEIP0CG38 1075 aa13.11□□□□□ -0.31
CASP4-212ENST00000533730 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
CASP4-212ENST00000533730 POLA1P09884 1462 aaPredicted RBP13.1□□□□□ -0.31
CASP4-212ENST00000533730 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
CASP4-212ENST00000533730 NBR1Q14596 966 aa13.09□□□□□ -0.31
CASP4-212ENST00000533730 FGD5Q6ZNL6 1462 aa13.09□□□□□ -0.31
CASP4-212ENST00000533730 SOGA1O94964 1423 aa13.07□□□□□ -0.32
CASP4-212ENST00000533730 DCBLD2Q96PD2 775 aa13.07□□□□□ -0.32
CASP4-212ENST00000533730 CABP2Q9NPB3 220 aa13.07□□□□□ -0.32
CASP4-212ENST00000533730 TOP2BQ02880 1626 aa13.06□□□□□ -0.32
CASP4-212ENST00000533730 TRIM35Q9UPQ4 493 aa13.06□□□□□ -0.32
CASP4-212ENST00000533730 TARBP1Q13395 1621 aaKnown RBP13.06□□□□□ -0.32
CASP4-212ENST00000533730 BIVM-ERCC5R4GMW8 1640 aa13.06□□□□□ -0.32
CASP4-212ENST00000533730 NKX1-1Q15270 411 aaPredicted RBP13.05□□□□□ -0.32
CASP4-212ENST00000533730 PELP1Q8IZL8 1130 aaKnown RBP13.04□□□□□ -0.32
CASP4-212ENST00000533730 WDR97A6NE52 1622 aa13.03□□□□□ -0.32
CASP4-212ENST00000533730 EFCAB3Q8N7B9 438 aa13.03□□□□□ -0.32
CASP4-212ENST00000533730 SYNJ1O43426 1573 aa13.03□□□□□ -0.32
CASP4-212ENST00000533730 RAD54L2Q9Y4B4 1467 aa13.02□□□□□ -0.33
CASP4-212ENST00000533730 ZNF608Q9ULD9 1512 aaPredicted RBP13.01□□□□□ -0.33
CASP4-212ENST00000533730 EIF4G3O43432 1585 aaKnown RBP12.99□□□□□ -0.33
CASP4-212ENST00000533730 ABCA10Q8WWZ4 1543 aa12.99□□□□□ -0.33
CASP4-212ENST00000533730 SOX12O15370 315 aa12.97□□□□□ -0.33
CASP4-212ENST00000533730 ILDR1Q86SU0 546 aaPredicted RBP12.97□□□□□ -0.33
CASP4-212ENST00000533730 MFRPQ9BY79 579 aa12.97□□□□□ -0.33
CASP4-212ENST00000533730 TIMELESSQ9UNS1 1208 aa12.96□□□□□ -0.33
CASP4-212ENST00000533730 AQRO60306 1485 aaKnown RBP eCLIP12.96□□□□□ -0.34
CASP4-212ENST00000533730 TDRD9Q8NDG6 1382 aaKnown RBP12.95□□□□□ -0.34
CASP4-212ENST00000533730 GOLGA2Q08379 1002 aa12.95□□□□□ -0.34
CASP4-212ENST00000533730 IER5LQ5T953 404 aa12.95□□□□□ -0.34
CASP4-212ENST00000533730 MKRN3Q13064 507 aaKnown RBP12.94□□□□□ -0.34
CASP4-212ENST00000533730 GTPBP6O43824 516 aaPredicted RBP12.93□□□□□ -0.34
CASP4-212ENST00000533730 FBXO22Q8NEZ5 403 aa12.93□□□□□ -0.34
CASP4-212ENST00000533730 GRIN2BQ13224 1484 aa12.92□□□□□ -0.34
CASP4-212ENST00000533730 GAPVD1Q14C86 1478 aa12.92□□□□□ -0.34
CASP4-212ENST00000533730 TULP1O00294 542 aaPredicted RBP12.92□□□□□ -0.34
CASP4-212ENST00000533730 PHF8Q9UPP1 1060 aa12.92□□□□□ -0.34
CASP4-212ENST00000533730 IRX5P78411 483 aaPredicted RBP12.91□□□□□ -0.34
CASP4-212ENST00000533730 ABCA5Q8WWZ7 1642 aa12.91□□□□□ -0.34
CASP4-212ENST00000533730 SLC39A7Q92504 469 aa12.9□□□□□ -0.34
CASP4-212ENST00000533730 MS4A4AQ96JQ5 239 aa12.89□□□□□ -0.35
CASP4-212ENST00000533730 MAGI1Q96QZ7 1491 aaPredicted RBP12.89□□□□□ -0.35
CASP4-212ENST00000533730 POTEFA5A3E0 1075 aa12.88□□□□□ -0.35
CASP4-212ENST00000533730 C7P10643 843 aa12.88□□□□□ -0.35
CASP4-212ENST00000533730 NLRP6P59044 892 aa12.88□□□□□ -0.35
CASP4-212ENST00000533730 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.87□□□□□ -0.355e-8■■■■□ 20
CASP4-212ENST00000533730 PBRM1Q86U86 1689 aa12.86□□□□□ -0.35
CASP4-212ENST00000533730 SNAPC4Q5SXM2 1469 aa12.86□□□□□ -0.35
CASP4-212ENST00000533730 PDCD7Q8N8D1 485 aaKnown RBP12.86□□□□□ -0.35
CASP4-212ENST00000533730 METRNQ9UJH8 293 aa12.85□□□□□ -0.35
CASP4-212ENST00000533730 COLQQ9Y215 455 aaPredicted RBP12.85□□□□□ -0.35
CASP4-212ENST00000533730 KIF27Q86VH2 1401 aa12.85□□□□□ -0.35
CASP4-212ENST00000533730 ERICH3Q5RHP9 1530 aa12.84□□□□□ -0.35
CASP4-212ENST00000533730 OCEL1Q9H607 264 aa12.84□□□□□ -0.35
CASP4-212ENST00000533730 RYDENQ9NUL5 291 aaKnown RBP12.84□□□□□ -0.35
CASP4-212ENST00000533730 GTF3C3Q9Y5Q9 886 aa12.84□□□□□ -0.35
CASP4-212ENST00000533730 SYNJ2O15056 1496 aa12.83□□□□□ -0.36
CASP4-212ENST00000533730 CHMP7Q8WUX9 453 aaPredicted RBP12.81□□□□□ -0.36
CASP4-212ENST00000533730 DPY19L2Q6NUT2 758 aa12.8□□□□□ -0.36
CASP4-212ENST00000533730 CHD1O14646 1710 aa12.79□□□□□ -0.36
CASP4-212ENST00000533730 PPP1R37O75864 691 aa12.79□□□□□ -0.36
CASP4-212ENST00000533730 FHAD1B1AJZ9 1412 aa12.79□□□□□ -0.36
CASP4-212ENST00000533730 ADAMTS12P58397 1594 aa12.78□□□□□ -0.36
CASP4-212ENST00000533730 PLCG2P16885 1265 aa12.78□□□□□ -0.36
CASP4-212ENST00000533730 SEC24BO95487 1268 aa12.77□□□□□ -0.37
CASP4-212ENST00000533730 IGF1RP08069 1367 aa12.75□□□□□ -0.37
CASP4-212ENST00000533730 CUL7Q14999 1698 aa12.74□□□□□ -0.37
CASP4-212ENST00000533730 GRIN2AQ12879 1464 aa12.74□□□□□ -0.37
CASP4-212ENST00000533730 POTEB2H3BUK9 544 aa12.69□□□□□ -0.38
CASP4-212ENST00000533730 NUP160Q12769 1436 aa12.69□□□□□ -0.38
CASP4-212ENST00000533730 EEA1Q15075 1411 aa12.69□□□□□ -0.38
CASP4-212ENST00000533730 CARMIL1Q5VZK9 1371 aa12.69□□□□□ -0.38
CASP4-212ENST00000533730 CLASP1Q7Z460 1538 aa12.68□□□□□ -0.38
CASP4-212ENST00000533730 TMEM121BQ9BXQ6 578 aaPredicted RBP12.68□□□□□ -0.38
CASP4-212ENST00000533730 RUSC2Q8N2Y8 1516 aa12.66□□□□□ -0.38
CASP4-212ENST00000533730 POTEJP0CG39 1038 aa12.65□□□□□ -0.38
CASP4-212ENST00000533730 TMEM132AQ24JP5 1023 aa12.65□□□□□ -0.38
CASP4-212ENST00000533730 MICALL2Q8IY33 904 aa12.65□□□□□ -0.38
CASP4-212ENST00000533730 L3MBTL3Q96JM7 780 aaPredicted RBP12.65□□□□□ -0.38
CASP4-212ENST00000533730 BOLA1Q9Y3E2 137 aa12.65□□□□□ -0.38
CASP4-212ENST00000533730 CEP170Q5SW79 1584 aa12.64□□□□□ -0.39
CASP4-212ENST00000533730 ERICH6Q7L0X2 663 aa12.63□□□□□ -0.39
CASP4-212ENST00000533730 RAPGEF2Q9Y4G8 1499 aa12.63□□□□□ -0.39
CASP4-212ENST00000533730 ARHGEF11O15085 1522 aa12.62□□□□□ -0.39
CASP4-212ENST00000533730 ARXQ96QS3 562 aa12.62□□□□□ -0.39
CASP4-212ENST00000533730 CADPS2Q86UW7 1296 aa12.6□□□□□ -0.39
CASP4-212ENST00000533730 KIAA0586Q9BVV6 1533 aa12.6□□□□□ -0.39
CASP4-212ENST00000533730 PRXQ9BXM0 1461 aa12.59□□□□□ -0.39
CASP4-212ENST00000533730 RIMBP3CA6NJZ7 1639 aa12.59□□□□□ -0.39
CASP4-212ENST00000533730 RIMBP3BA6NNM3 1639 aa12.59□□□□□ -0.39
CASP4-212ENST00000533730 RIMBP3Q9UFD9 1639 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms