RNA–Protein interactions for RNA: ENST00000533730.5

CASP4-212, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 1,214 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-212ENST00000533730 AEBP2Q6ZN18 517 aaPredicted RBP26.63■■□□□ 1.85
CASP4-212ENST00000533730 CHIC1Q5VXU3 224 aa26.03■■□□□ 1.76
CASP4-212ENST00000533730 PHF23Q9BUL5 403 aaPredicted RBP22.94■■□□□ 1.26
CASP4-212ENST00000533730 SENP3Q9H4L4 574 aaPredicted RBP22.51■■□□□ 1.19
CASP4-212ENST00000533730 PLPPR3Q6T4P5 718 aa21.12■□□□□ 0.97
CASP4-212ENST00000533730 FOXD1Q16676 465 aa20.93■□□□□ 0.94
CASP4-212ENST00000533730 PPP6R1Q9UPN7 881 aa20.22■□□□□ 0.83
CASP4-212ENST00000533730 ADRA2BP18089 450 aa20.15■□□□□ 0.82
CASP4-212ENST00000533730 PIAS4Q8N2W9 510 aaPredicted RBP19.69■□□□□ 0.74
CASP4-212ENST00000533730 MSH5O43196 834 aa19.23■□□□□ 0.67
CASP4-212ENST00000533730 PPP4R3CPQ6ZMV5 832 aa18.62■□□□□ 0.57
CASP4-212ENST00000533730 SCAF1Q9H7N4 1312 aaKnown RBP18.37■□□□□ 0.53
CASP4-212ENST00000533730 MAPK8IP2Q13387 824 aaPredicted RBP18.29■□□□□ 0.52
CASP4-212ENST00000533730 KCNA4P22459 653 aa18.27■□□□□ 0.52
CASP4-212ENST00000533730 NISCHQ9Y2I1 1504 aa18.19■□□□□ 0.5
CASP4-212ENST00000533730 NCBP3Q53F19 620 aaKnown RBP18.09■□□□□ 0.49
CASP4-212ENST00000533730 CNKSR2Q8WXI2 1034 aa18.09■□□□□ 0.49
CASP4-212ENST00000533730 DMRT2Q9Y5R5 561 aa18.01■□□□□ 0.47
CASP4-212ENST00000533730 NPM3O75607 178 aaKnown RBP17.91■□□□□ 0.46
CASP4-212ENST00000533730 RNF216Q9NWF9 866 aaPredicted RBP17.74■□□□□ 0.43
CASP4-212ENST00000533730 HOXD11P31277 338 aaPredicted RBP17.69■□□□□ 0.42
CASP4-212ENST00000533730 POTEDQ86YR6 584 aa17.46■□□□□ 0.39
CASP4-212ENST00000533730 DNAJC5BQ9UF47 199 aa17.46■□□□□ 0.39
CASP4-212ENST00000533730 SLC4A1APQ9BWU0 796 aaKnown RBP17.36■□□□□ 0.37
CASP4-212ENST00000533730 EHMT2Q96KQ7 1210 aa17.3■□□□□ 0.36
CASP4-212ENST00000533730 DCAF8L1A6NGE4 600 aa17.1■□□□□ 0.33
CASP4-212ENST00000533730 SLC4A2P04920 1241 aa16.93■□□□□ 0.3
CASP4-212ENST00000533730 ZBTB22O15209 634 aa16.85■□□□□ 0.29
CASP4-212ENST00000533730 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
CASP4-212ENST00000533730 FOXD4L1Q9NU39 408 aa16.78■□□□□ 0.28
CASP4-212ENST00000533730 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.75■□□□□ 0.27
CASP4-212ENST00000533730 U3KPZ7 1027 aaPredicted RBP16.57■□□□□ 0.24
CASP4-212ENST00000533730 RNF39Q9H2S5 420 aa16.53■□□□□ 0.24
CASP4-212ENST00000533730 MYCNP04198 464 aaPredicted RBP16.5■□□□□ 0.23
CASP4-212ENST00000533730 C1QBPQ07021 282 aaKnown RBP16.31■□□□□ 0.2
CASP4-212ENST00000533730 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.3■□□□□ 0.2
CASP4-212ENST00000533730 HNRNPUL2Q1KMD3 747 aaKnown RBP16.3■□□□□ 0.2
CASP4-212ENST00000533730 SAMD1Q6SPF0 538 aaPredicted RBP16.26■□□□□ 0.19
CASP4-212ENST00000533730 ATXN8OSP0DMR3 200 aa16.2■□□□□ 0.18
CASP4-212ENST00000533730 CCDC180Q9P1Z9 1646 aa16.17■□□□□ 0.18
CASP4-212ENST00000533730 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
CASP4-212ENST00000533730 APLP2Q06481 763 aa16.08■□□□□ 0.16
CASP4-212ENST00000533730 SPINK5Q9NQ38 1064 aaPredicted RBP16.08■□□□□ 0.16
CASP4-212ENST00000533730 CACNB1Q02641 598 aaPredicted RBP15.98■□□□□ 0.15
CASP4-212ENST00000533730 CAPN15O75808 1086 aa15.94■□□□□ 0.14
CASP4-212ENST00000533730 ZNF219Q9P2Y4 722 aaPredicted RBP15.9■□□□□ 0.14
CASP4-212ENST00000533730 TRHP20396 242 aaPredicted RBP15.88■□□□□ 0.13
CASP4-212ENST00000533730 DSG3P32926 999 aa15.75■□□□□ 0.11
CASP4-212ENST00000533730 ABCC9O60706 1549 aa15.68■□□□□ 0.1
CASP4-212ENST00000533730 POLA2Q14181 598 aa15.68■□□□□ 0.1
CASP4-212ENST00000533730 ABCB7O75027 752 aa15.66■□□□□ 0.1
CASP4-212ENST00000533730 SLC24A1O60721 1099 aa15.53■□□□□ 0.08
CASP4-212ENST00000533730 MKRN4PQ13434 485 aaPredicted RBP15.43■□□□□ 0.06
CASP4-212ENST00000533730 RTN4Q9NQC3 1192 aaKnown RBP15.42■□□□□ 0.06
CASP4-212ENST00000533730 ZBTB12Q9Y330 459 aaPredicted RBP15.38■□□□□ 0.05
CASP4-212ENST00000533730 FBLN2P98095 1184 aa15.33■□□□□ 0.04
CASP4-212ENST00000533730 AMER1Q5JTC6 1135 aaPredicted RBP15.33■□□□□ 0.04
CASP4-212ENST00000533730 NACADO15069 1562 aa15.19■□□□□ 0.02
CASP4-212ENST00000533730 RB1CC1Q8TDY2 1594 aa15.19■□□□□ 0.02
CASP4-212ENST00000533730 ZCCHC6Q5VYS8 1495 aaKnown RBP15.18■□□□□ 0.02
CASP4-212ENST00000533730 MYO15BQ96JP2 1530 aa15.16■□□□□ 0.02
CASP4-212ENST00000533730 OSCARQ8IYS5 282 aa15.14■□□□□ 0.01
CASP4-212ENST00000533730 DCAF8L2P0C7V8 631 aa15.13■□□□□ 0.01
CASP4-212ENST00000533730 DCAF1Q9Y4B6 1507 aa15.11■□□□□ 0.01
CASP4-212ENST00000533730 FKBP8Q14318 412 aa15.09■□□□□ 0.01
CASP4-212ENST00000533730 SPDYE4A6NLX3 237 aa15.04■□□□□ -0
CASP4-212ENST00000533730 SPDYE2BA6NHP3 402 aa15.01□□□□□ -0.01
CASP4-212ENST00000533730 SPDYE6P0CI01 402 aa15.01□□□□□ -0.01
CASP4-212ENST00000533730 SPDYE2Q495Y8 402 aa15.01□□□□□ -0.01
CASP4-212ENST00000533730 SSUH2Q9Y2M2 353 aa14.95□□□□□ -0.02
CASP4-212ENST00000533730 ZNF692Q9BU19 519 aaPredicted RBP14.94□□□□□ -0.02
CASP4-212ENST00000533730 RBM42Q9BTD8 480 aaKnown RBP14.93□□□□□ -0.02
CASP4-212ENST00000533730 PROM2Q8N271 834 aa14.89□□□□□ -0.03
CASP4-212ENST00000533730 AKT1S1Q96B36 256 aa14.8□□□□□ -0.04
CASP4-212ENST00000533730 UNC13AQ9UPW8 1703 aa14.76□□□□□ -0.05
CASP4-212ENST00000533730 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
CASP4-212ENST00000533730 SCRIBQ14160 1630 aa14.7□□□□□ -0.06
CASP4-212ENST00000533730 BICRAQ9NZM4 1560 aa14.66□□□□□ -0.06
CASP4-212ENST00000533730 REM2Q8IYK8 340 aaPredicted RBP14.66□□□□□ -0.06
CASP4-212ENST00000533730 SHROOM4Q9ULL8 1493 aa14.63□□□□□ -0.07
CASP4-212ENST00000533730 SPDYE1Q8NFV5 336 aaPredicted RBP14.54□□□□□ -0.08
CASP4-212ENST00000533730 FBXO3Q9UK99 471 aa14.53□□□□□ -0.08
CASP4-212ENST00000533730 STAG3Q9UJ98 1225 aa14.5□□□□□ -0.09
CASP4-212ENST00000533730 PITPNM1O00562 1244 aa14.49□□□□□ -0.09
CASP4-212ENST00000533730 CLEC11AQ9Y240 323 aa14.43□□□□□ -0.1
CASP4-212ENST00000533730 VASPP50552 380 aaPredicted RBP14.35□□□□□ -0.11
CASP4-212ENST00000533730 PRR29P0C7W0 189 aa14.33□□□□□ -0.12
CASP4-212ENST00000533730 CHRDL2Q6WN34 429 aa14.32□□□□□ -0.12
CASP4-212ENST00000533730 EIF4G1Q04637 1599 aaKnown RBP14.29□□□□□ -0.12
CASP4-212ENST00000533730 FXR2P51116 673 aaKnown RBP eCLIP14.25□□□□□ -0.13
CASP4-212ENST00000533730 CREBZFQ9NS37 354 aa14.23□□□□□ -0.13
CASP4-212ENST00000533730 MIER1Q8N108 512 aa14.22□□□□□ -0.13
CASP4-212ENST00000533730 IFNLR1Q8IU57 520 aaPredicted RBP14.21□□□□□ -0.13
CASP4-212ENST00000533730 CC2D2AQ9P2K1 1620 aa14.2□□□□□ -0.14
CASP4-212ENST00000533730 PLCD3Q8N3E9 789 aa14.18□□□□□ -0.14
CASP4-212ENST00000533730 PIP4P2Q8N4L2 257 aa14.17□□□□□ -0.14
CASP4-212ENST00000533730 MNX1P50219 401 aaPredicted RBP14.13□□□□□ -0.15
CASP4-212ENST00000533730 PLCB2Q00722 1185 aa14.13□□□□□ -0.15
CASP4-212ENST00000533730 BAZ1AQ9NRL2 1556 aaPredicted RBP14.13□□□□□ -0.15
CASP4-212ENST00000533730 CHADLQ6NUI6 762 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms