RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 LTBP4Q8N2S1 1624 aa18.54■□□□□ 0.56
NEDD8-204ENST00000526430 PTPRTO14522 1441 aa18.54■□□□□ 0.56
NEDD8-204ENST00000526430 NUP153P49790 1475 aaKnown RBP18.52■□□□□ 0.56
NEDD8-204ENST00000526430 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.52■□□□□ 0.56
NEDD8-204ENST00000526430 UHRF1BP1Q6BDS2 1440 aa18.5■□□□□ 0.55
NEDD8-204ENST00000526430 ATP10AO60312 1499 aa18.47■□□□□ 0.55
NEDD8-204ENST00000526430 C9orf84Q5VXU9 1444 aa18.47■□□□□ 0.55
NEDD8-204ENST00000526430 MLECQ14165 292 aa18.46■□□□□ 0.55
NEDD8-204ENST00000526430 C3P01024 1663 aa18.46■□□□□ 0.55
NEDD8-204ENST00000526430 CHIC1Q5VXU3 224 aa18.45■□□□□ 0.54
NEDD8-204ENST00000526430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.44■□□□□ 0.54
NEDD8-204ENST00000526430 HNRNPUL2Q1KMD3 747 aaKnown RBP18.44■□□□□ 0.54
NEDD8-204ENST00000526430 P3H3Q8IVL6 736 aa18.44■□□□□ 0.54
NEDD8-204ENST00000526430 PLEKHD1A6NEE1 506 aa18.4■□□□□ 0.54
NEDD8-204ENST00000526430 CEBPAP49715 358 aaPredicted RBP18.4■□□□□ 0.54
NEDD8-204ENST00000526430 MYO5CQ9NQX4 1742 aa18.4■□□□□ 0.54
NEDD8-204ENST00000526430 SCAPERQ9BY12 1400 aa18.4■□□□□ 0.54
NEDD8-204ENST00000526430 REREQ9P2R6 1566 aa18.39■□□□□ 0.53
NEDD8-204ENST00000526430 KDM5CP41229 1560 aa18.36■□□□□ 0.53
NEDD8-204ENST00000526430 NCOA1Q15788 1441 aa18.36■□□□□ 0.53
NEDD8-204ENST00000526430 PLCH2O75038 1416 aa18.35■□□□□ 0.53
NEDD8-204ENST00000526430 DIP2CQ9Y2E4 1556 aa18.33■□□□□ 0.52
NEDD8-204ENST00000526430 ZNF518AQ6AHZ1 1483 aa18.33■□□□□ 0.52
NEDD8-204ENST00000526430 MED1Q15648 1581 aaPredicted RBP18.31■□□□□ 0.52
NEDD8-204ENST00000526430 AGLP35573 1532 aa18.3■□□□□ 0.52
NEDD8-204ENST00000526430 TRAPPC8Q9Y2L5 1435 aa18.3■□□□□ 0.52
NEDD8-204ENST00000526430 MROH2AA6NES4 1674 aa18.29■□□□□ 0.52
NEDD8-204ENST00000526430 CAMSAP1Q5T5Y3 1602 aa18.28■□□□□ 0.52
NEDD8-204ENST00000526430 ABCA6Q8N139 1617 aa18.28■□□□□ 0.52
NEDD8-204ENST00000526430 SUPT6HQ7KZ85 1726 aaKnown RBP18.28■□□□□ 0.52
NEDD8-204ENST00000526430 ZNF142P52746 1687 aaPredicted RBP18.26■□□□□ 0.51
NEDD8-204ENST00000526430 CDK13Q14004 1512 aaKnown RBP18.24■□□□□ 0.51
NEDD8-204ENST00000526430 UBAP1LF5GYI3 381 aa18.24■□□□□ 0.51
NEDD8-204ENST00000526430 CNTLNQ9NXG0 1405 aa18.23■□□□□ 0.51
NEDD8-204ENST00000526430 EFCAB2Q5VUJ9 269 aa18.22■□□□□ 0.51
NEDD8-204ENST00000526430 NPATQ14207 1427 aa18.22■□□□□ 0.51
NEDD8-204ENST00000526430 MLH3Q9UHC1 1453 aa18.21■□□□□ 0.51
NEDD8-204ENST00000526430 PLA2R1Q13018 1463 aa18.2■□□□□ 0.5
NEDD8-204ENST00000526430 CDC42BPBQ9Y5S2 1711 aa18.19■□□□□ 0.5
NEDD8-204ENST00000526430 KIF14Q15058 1648 aa18.19■□□□□ 0.5
NEDD8-204ENST00000526430 ZNF335Q9H4Z2 1342 aaPredicted RBP18.19■□□□□ 0.5
NEDD8-204ENST00000526430 MYO3AQ8NEV4 1616 aa18.18■□□□□ 0.5
NEDD8-204ENST00000526430 ARHGAP5Q13017 1502 aa18.17■□□□□ 0.5
NEDD8-204ENST00000526430 KIDINS220Q9ULH0 1771 aa18.17■□□□□ 0.5
NEDD8-204ENST00000526430 ESF1Q9H501 851 aaKnown RBP18.16■□□□□ 0.5
NEDD8-204ENST00000526430 ITSN2Q9NZM3 1697 aa18.15■□□□□ 0.5
NEDD8-204ENST00000526430 TCOF1Q13428 1488 aaKnown RBP18.15■□□□□ 0.5
NEDD8-204ENST00000526430 AFAP1Q8N556 730 aa18.14■□□□□ 0.49
NEDD8-204ENST00000526430 CEP170BQ9Y4F5 1589 aaPredicted RBP18.13■□□□□ 0.49
NEDD8-204ENST00000526430 ABCC1P33527 1531 aa18.12■□□□□ 0.49
NEDD8-204ENST00000526430 PKD2Q13563 968 aa18.11■□□□□ 0.49
NEDD8-204ENST00000526430 PREX2Q70Z35 1606 aa18.11■□□□□ 0.49
NEDD8-204ENST00000526430 POLR1AO95602 1720 aaPredicted RBP18.11■□□□□ 0.49
NEDD8-204ENST00000526430 NCKAP5LQ9HCH0 1330 aa18.1■□□□□ 0.49
NEDD8-204ENST00000526430 CSRNP3Q8WYN3 585 aa18.1■□□□□ 0.49
NEDD8-204ENST00000526430 CLTCQ00610 1675 aaKnown RBP18.09■□□□□ 0.49
NEDD8-204ENST00000526430 HSPA1LP34931 641 aa18.09■□□□□ 0.49
NEDD8-204ENST00000526430 CPS1P31327 1500 aa18.08■□□□□ 0.49
NEDD8-204ENST00000526430 MYT1LQ9UL68 1186 aa18.07■□□□□ 0.48
NEDD8-204ENST00000526430 LRRIQ1Q96JM4 1722 aa18.06■□□□□ 0.48
NEDD8-204ENST00000526430 TROQ12816 1431 aaPredicted RBP18.06■□□□□ 0.48
NEDD8-204ENST00000526430 ZMYM3Q14202 1370 aa18.05■□□□□ 0.48
NEDD8-204ENST00000526430 CDK11AQ9UQ88 783 aaPredicted RBP18.05■□□□□ 0.48
NEDD8-204ENST00000526430 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
NEDD8-204ENST00000526430 TOM1O60784 492 aa18.03■□□□□ 0.48
NEDD8-204ENST00000526430 CLIP1P30622 1438 aa18.03■□□□□ 0.48
NEDD8-204ENST00000526430 EEA1Q15075 1411 aa18.03■□□□□ 0.48
NEDD8-204ENST00000526430 CDC42BPAQ5VT25 1732 aa18.02■□□□□ 0.48
NEDD8-204ENST00000526430 FMN1Q68DA7 1419 aa18.02■□□□□ 0.48
NEDD8-204ENST00000526430 PHF23Q9BUL5 403 aaPredicted RBP18.02■□□□□ 0.48
NEDD8-204ENST00000526430 PPP6R1Q9UPN7 881 aa18.02■□□□□ 0.48
NEDD8-204ENST00000526430 DNMT1P26358 1616 aaKnown RBP18.01■□□□□ 0.47
NEDD8-204ENST00000526430 ALKQ9UM73 1620 aa18.01■□□□□ 0.47
NEDD8-204ENST00000526430 PLXNC1O60486 1568 aa18■□□□□ 0.47
NEDD8-204ENST00000526430 PTPRKQ15262 1439 aa18■□□□□ 0.47
NEDD8-204ENST00000526430 SAMD9LQ8IVG5 1584 aa18■□□□□ 0.47
NEDD8-204ENST00000526430 NEURL4Q96JN8 1562 aa18■□□□□ 0.47
NEDD8-204ENST00000526430 SCAF1Q9H7N4 1312 aaKnown RBP17.99■□□□□ 0.47
NEDD8-204ENST00000526430 PIP4K2BP78356 416 aa17.99■□□□□ 0.47
NEDD8-204ENST00000526430 SHANK2Q9UPX8 1470 aa17.98■□□□□ 0.47
NEDD8-204ENST00000526430 A2ML1A8K2U0 1454 aa17.96■□□□□ 0.47
NEDD8-204ENST00000526430 VWDEQ8N2E2 1590 aa17.94■□□□□ 0.46
NEDD8-204ENST00000526430 INO80Q9ULG1 1556 aaPredicted RBP17.94■□□□□ 0.46
NEDD8-204ENST00000526430 ATP7AQ04656 1500 aa17.92■□□□□ 0.46
NEDD8-204ENST00000526430 ADGBQ8N7X0 1667 aa17.91■□□□□ 0.46
NEDD8-204ENST00000526430 RNF17Q9BXT8 1623 aaKnown RBP17.9■□□□□ 0.46
NEDD8-204ENST00000526430 SYNMO15061 1565 aa17.89■□□□□ 0.45
NEDD8-204ENST00000526430 DEPDC5O75140 1603 aa17.89■□□□□ 0.45
NEDD8-204ENST00000526430 SYCP2Q9BX26 1530 aa17.88■□□□□ 0.45
NEDD8-204ENST00000526430 ATP1B4Q9UN42 357 aaPredicted RBP17.88■□□□□ 0.45
NEDD8-204ENST00000526430 STRCP1A6NGW2 1772 aa17.88■□□□□ 0.45
NEDD8-204ENST00000526430 A2MP01023 1474 aa17.88■□□□□ 0.45
NEDD8-204ENST00000526430 ARHGAP35Q9NRY4 1499 aa17.88■□□□□ 0.45
NEDD8-204ENST00000526430 MED14O60244 1454 aa17.85■□□□□ 0.45
NEDD8-204ENST00000526430 IQGAP1P46940 1657 aa17.85■□□□□ 0.45
NEDD8-204ENST00000526430 CCDC18Q5T9S5 1454 aa17.84■□□□□ 0.45
NEDD8-204ENST00000526430 SPAG9O60271 1321 aaKnown RBP17.84■□□□□ 0.45
NEDD8-204ENST00000526430 RGS17Q9UGC6 210 aaPredicted RBP17.83■□□□□ 0.44
NEDD8-204ENST00000526430 FAM135AQ9P2D6 1515 aa17.82■□□□□ 0.44
NEDD8-204ENST00000526430 KIAA1107Q9UPP5 1409 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms