RNA–Protein interactions for RNA: ENST00000522466.1

PDGFRB-210, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 296 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-210ENST00000522466 NUP153P49790 1475 aaKnown RBP13.7□□□□□ -0.22
PDGFRB-210ENST00000522466 PLEKHD1A6NEE1 506 aa13.69□□□□□ -0.22
PDGFRB-210ENST00000522466 CEBPAP49715 358 aaPredicted RBP13.69□□□□□ -0.22
PDGFRB-210ENST00000522466 FHOD3Q2V2M9 1422 aa13.69□□□□□ -0.22
PDGFRB-210ENST00000522466 TTC37Q6PGP7 1564 aa13.67□□□□□ -0.22
PDGFRB-210ENST00000522466 CFAP74Q9C0B2 1584 aa13.67□□□□□ -0.22
PDGFRB-210ENST00000522466 EFCAB5A4FU69 1503 aa13.67□□□□□ -0.22
PDGFRB-210ENST00000522466 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.67□□□□□ -0.22
PDGFRB-210ENST00000522466 HECW1Q76N89 1606 aa13.67□□□□□ -0.22
PDGFRB-210ENST00000522466 ZMYM4Q5VZL5 1548 aa13.65□□□□□ -0.22
PDGFRB-210ENST00000522466 PREX1Q8TCU6 1659 aa13.65□□□□□ -0.22
PDGFRB-210ENST00000522466 STRCQ7RTU9 1775 aa13.65□□□□□ -0.22
PDGFRB-210ENST00000522466 SPATA31D1Q6ZQQ2 1576 aa13.64□□□□□ -0.23
PDGFRB-210ENST00000522466 SCAPERQ9BY12 1400 aa13.63□□□□□ -0.23
PDGFRB-210ENST00000522466 ARHGEF12Q9NZN5 1544 aa13.61□□□□□ -0.23
PDGFRB-210ENST00000522466 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
PDGFRB-210ENST00000522466 MAGI2Q86UL8 1455 aa13.6□□□□□ -0.23
PDGFRB-210ENST00000522466 CDK13Q14004 1512 aaKnown RBP13.59□□□□□ -0.23
PDGFRB-210ENST00000522466 ATP10AO60312 1499 aa13.59□□□□□ -0.23
PDGFRB-210ENST00000522466 MYT1LQ9UL68 1186 aa13.58□□□□□ -0.24
PDGFRB-210ENST00000522466 DMRT2Q9Y5R5 561 aa13.58□□□□□ -0.24
PDGFRB-210ENST00000522466 C9orf84Q5VXU9 1444 aa13.57□□□□□ -0.24
PDGFRB-210ENST00000522466 UHRF1BP1Q6BDS2 1440 aa13.57□□□□□ -0.24
PDGFRB-210ENST00000522466 ATP1B4Q9UN42 357 aaPredicted RBP13.57□□□□□ -0.24
PDGFRB-210ENST00000522466 SETD1BQ9UPS6 1966 aaKnown RBP13.55□□□□□ -0.24
PDGFRB-210ENST00000522466 PLCH2O75038 1416 aa13.55□□□□□ -0.24
PDGFRB-210ENST00000522466 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
PDGFRB-210ENST00000522466 MYO5CQ9NQX4 1742 aa13.53□□□□□ -0.24
PDGFRB-210ENST00000522466 EFCAB2Q5VUJ9 269 aa13.52□□□□□ -0.25
PDGFRB-210ENST00000522466 AFAP1Q8N556 730 aa13.52□□□□□ -0.25
PDGFRB-210ENST00000522466 C3P01024 1663 aa13.52□□□□□ -0.25
PDGFRB-210ENST00000522466 LTBP4Q8N2S1 1624 aa13.5□□□□□ -0.25
PDGFRB-210ENST00000522466 PTPRTO14522 1441 aa13.5□□□□□ -0.25
PDGFRB-210ENST00000522466 KIF14Q15058 1648 aa13.49□□□□□ -0.25
PDGFRB-210ENST00000522466 ESF1Q9H501 851 aaKnown RBP13.48□□□□□ -0.25
PDGFRB-210ENST00000522466 DIP2CQ9Y2E4 1556 aa13.48□□□□□ -0.25
PDGFRB-210ENST00000522466 ARHGAP5Q13017 1502 aa13.47□□□□□ -0.25
PDGFRB-210ENST00000522466 ZNF518AQ6AHZ1 1483 aa13.46□□□□□ -0.25
PDGFRB-210ENST00000522466 ABCA6Q8N139 1617 aa13.46□□□□□ -0.26
PDGFRB-210ENST00000522466 UBAP1LF5GYI3 381 aa13.45□□□□□ -0.26
PDGFRB-210ENST00000522466 KDM5CP41229 1560 aa13.45□□□□□ -0.26
PDGFRB-210ENST00000522466 NCKAP5LQ9HCH0 1330 aa13.44□□□□□ -0.26
PDGFRB-210ENST00000522466 NCOA1Q15788 1441 aa13.43□□□□□ -0.26
PDGFRB-210ENST00000522466 TRAPPC8Q9Y2L5 1435 aa13.43□□□□□ -0.26
PDGFRB-210ENST00000522466 ZNF335Q9H4Z2 1342 aaPredicted RBP13.42□□□□□ -0.26
PDGFRB-210ENST00000522466 CAMSAP1Q5T5Y3 1602 aa13.42□□□□□ -0.26
PDGFRB-210ENST00000522466 CDC42BPBQ9Y5S2 1711 aa13.42□□□□□ -0.26
PDGFRB-210ENST00000522466 CDK11AQ9UQ88 783 aaPredicted RBP13.41□□□□□ -0.26
PDGFRB-210ENST00000522466 IQSEC2Q5JU85 1478 aa13.41□□□□□ -0.26
PDGFRB-210ENST00000522466 REREQ9P2R6 1566 aa13.39□□□□□ -0.27
PDGFRB-210ENST00000522466 LRRIQ1Q96JM4 1722 aa13.39□□□□□ -0.27
PDGFRB-210ENST00000522466 TROQ12816 1431 aaPredicted RBP13.39□□□□□ -0.27
PDGFRB-210ENST00000522466 SCAF1Q9H7N4 1312 aaKnown RBP13.39□□□□□ -0.27
PDGFRB-210ENST00000522466 EEA1Q15075 1411 aa13.38□□□□□ -0.27
PDGFRB-210ENST00000522466 ITSN2Q9NZM3 1697 aa13.37□□□□□ -0.27
PDGFRB-210ENST00000522466 MLH3Q9UHC1 1453 aa13.37□□□□□ -0.27
PDGFRB-210ENST00000522466 SUPT6HQ7KZ85 1726 aaKnown RBP13.37□□□□□ -0.27
PDGFRB-210ENST00000522466 UBTFP17480 764 aaKnown RBP13.37□□□□□ -0.27
PDGFRB-210ENST00000522466 AGLP35573 1532 aa13.37□□□□□ -0.27
PDGFRB-210ENST00000522466 KIDINS220Q9ULH0 1771 aa13.37□□□□□ -0.27
PDGFRB-210ENST00000522466 CLIP1P30622 1438 aa13.36□□□□□ -0.27
PDGFRB-210ENST00000522466 PIP4K2BP78356 416 aa13.35□□□□□ -0.27
PDGFRB-210ENST00000522466 FMN1Q68DA7 1419 aa13.35□□□□□ -0.27
PDGFRB-210ENST00000522466 ARHGAP35Q9NRY4 1499 aa13.35□□□□□ -0.27
PDGFRB-210ENST00000522466 ABCC1P33527 1531 aa13.34□□□□□ -0.27
PDGFRB-210ENST00000522466 CNTLNQ9NXG0 1405 aa13.34□□□□□ -0.27
PDGFRB-210ENST00000522466 ZNF777Q9ULD5 760 aaPredicted RBP13.34□□□□□ -0.27
PDGFRB-210ENST00000522466 ZMYM3Q14202 1370 aa13.33□□□□□ -0.27
PDGFRB-210ENST00000522466 PREX2Q70Z35 1606 aa13.33□□□□□ -0.28
PDGFRB-210ENST00000522466 HSPA1LP34931 641 aa13.33□□□□□ -0.28
PDGFRB-210ENST00000522466 CLTCQ00610 1675 aaKnown RBP13.33□□□□□ -0.28
PDGFRB-210ENST00000522466 MROH2AA6NES4 1674 aa13.32□□□□□ -0.28
PDGFRB-210ENST00000522466 MED1Q15648 1581 aaPredicted RBP13.32□□□□□ -0.28
PDGFRB-210ENST00000522466 MYO3AQ8NEV4 1616 aa13.31□□□□□ -0.28
PDGFRB-210ENST00000522466 NPATQ14207 1427 aa13.3□□□□□ -0.28
PDGFRB-210ENST00000522466 CDC42BPAQ5VT25 1732 aa13.3□□□□□ -0.28
PDGFRB-210ENST00000522466 SAMD9LQ8IVG5 1584 aa13.29□□□□□ -0.28
PDGFRB-210ENST00000522466 CEP170BQ9Y4F5 1589 aaPredicted RBP13.28□□□□□ -0.28
PDGFRB-210ENST00000522466 HNRNPMP52272 730 aaKnown RBP eCLIP13.28□□□□□ -0.28
PDGFRB-210ENST00000522466 PKD2Q13563 968 aa13.28□□□□□ -0.28
PDGFRB-210ENST00000522466 GGT6Q6P531 493 aa13.28□□□□□ -0.28
PDGFRB-210ENST00000522466 ZNF142P52746 1687 aaPredicted RBP13.28□□□□□ -0.28
PDGFRB-210ENST00000522466 SPAG9O60271 1321 aaKnown RBP13.27□□□□□ -0.29
PDGFRB-210ENST00000522466 PLA2R1Q13018 1463 aa13.26□□□□□ -0.29
PDGFRB-210ENST00000522466 PTPRKQ15262 1439 aa13.26□□□□□ -0.29
PDGFRB-210ENST00000522466 SYCP2Q9BX26 1530 aa13.26□□□□□ -0.29
PDGFRB-210ENST00000522466 TCOF1Q13428 1488 aaKnown RBP13.25□□□□□ -0.29
PDGFRB-210ENST00000522466 TOM1O60784 492 aa13.23□□□□□ -0.29
PDGFRB-210ENST00000522466 ATP7AQ04656 1500 aa13.23□□□□□ -0.29
PDGFRB-210ENST00000522466 A2MP01023 1474 aa13.22□□□□□ -0.29
PDGFRB-210ENST00000522466 DNMT1P26358 1616 aaKnown RBP13.21□□□□□ -0.3
PDGFRB-210ENST00000522466 POLR1AO95602 1720 aaPredicted RBP13.2□□□□□ -0.3
PDGFRB-210ENST00000522466 PLXNC1O60486 1568 aa13.2□□□□□ -0.3
PDGFRB-210ENST00000522466 A2ML1A8K2U0 1454 aa13.19□□□□□ -0.3
PDGFRB-210ENST00000522466 CCDC18Q5T9S5 1454 aa13.19□□□□□ -0.3
PDGFRB-210ENST00000522466 GPATCH8Q9UKJ3 1502 aaKnown RBP13.18□□□□□ -0.3
PDGFRB-210ENST00000522466 SHANK2Q9UPX8 1470 aa13.18□□□□□ -0.3
PDGFRB-210ENST00000522466 FBXO31Q5XUX0 539 aaPredicted RBP13.18□□□□□ -0.3
PDGFRB-210ENST00000522466 CASKIN1Q8WXD9 1431 aa13.18□□□□□ -0.3
PDGFRB-210ENST00000522466 NEURL4Q96JN8 1562 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms