RNA–Protein interactions for RNA: ENST00000520860.1

SRGAP3-212, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5

Gene SRGAP3, Length 422 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-212ENST00000520860 PREX1Q8TCU6 1659 aa22.36■■□□□ 1.17
SRGAP3-212ENST00000520860 HECW1Q76N89 1606 aa22.36■■□□□ 1.17
SRGAP3-212ENST00000520860 SPATA31D1Q6ZQQ2 1576 aa22.33■■□□□ 1.17
SRGAP3-212ENST00000520860 ARHGEF12Q9NZN5 1544 aa22.33■■□□□ 1.17
SRGAP3-212ENST00000520860 RANGAP1P46060 587 aaPredicted RBP22.33■■□□□ 1.17
SRGAP3-212ENST00000520860 SCAPERQ9BY12 1400 aa22.32■■□□□ 1.16
SRGAP3-212ENST00000520860 ATP10AO60312 1499 aa22.31■■□□□ 1.16
SRGAP3-212ENST00000520860 CEBPAP49715 358 aaPredicted RBP22.31■■□□□ 1.16
SRGAP3-212ENST00000520860 C9orf84Q5VXU9 1444 aa22.31■■□□□ 1.16
SRGAP3-212ENST00000520860 CSRNP3Q8WYN3 585 aa22.29■■□□□ 1.16
SRGAP3-212ENST00000520860 UHRF1BP1Q6BDS2 1440 aa22.29■■□□□ 1.16
SRGAP3-212ENST00000520860 STRCQ7RTU9 1775 aa22.27■■□□□ 1.16
SRGAP3-212ENST00000520860 PLCH2O75038 1416 aa22.25■■□□□ 1.15
SRGAP3-212ENST00000520860 SETD1BQ9UPS6 1966 aaKnown RBP22.24■■□□□ 1.15
SRGAP3-212ENST00000520860 PTPRTO14522 1441 aa22.23■■□□□ 1.15
SRGAP3-212ENST00000520860 EFCAB2Q5VUJ9 269 aa22.21■■□□□ 1.15
SRGAP3-212ENST00000520860 CDK13Q14004 1512 aaKnown RBP22.19■■□□□ 1.14
SRGAP3-212ENST00000520860 MYT1LQ9UL68 1186 aa22.17■■□□□ 1.14
SRGAP3-212ENST00000520860 ZNF518AQ6AHZ1 1483 aa22.15■■□□□ 1.14
SRGAP3-212ENST00000520860 IQSEC2Q5JU85 1478 aa22.15■■□□□ 1.14
SRGAP3-212ENST00000520860 ESF1Q9H501 851 aaKnown RBP22.13■■□□□ 1.13
SRGAP3-212ENST00000520860 MYO5CQ9NQX4 1742 aa22.13■■□□□ 1.13
SRGAP3-212ENST00000520860 LTBP4Q8N2S1 1624 aa22.13■■□□□ 1.13
SRGAP3-212ENST00000520860 AFAP1Q8N556 730 aa22.1■■□□□ 1.13
SRGAP3-212ENST00000520860 KDM5CP41229 1560 aa22.09■■□□□ 1.13
SRGAP3-212ENST00000520860 CDK11AQ9UQ88 783 aaPredicted RBP22.09■■□□□ 1.13
SRGAP3-212ENST00000520860 C3P01024 1663 aa22.08■■□□□ 1.13
SRGAP3-212ENST00000520860 EEA1Q15075 1411 aa22.08■■□□□ 1.13
SRGAP3-212ENST00000520860 ATP1B4Q9UN42 357 aaPredicted RBP22.08■■□□□ 1.13
SRGAP3-212ENST00000520860 TRAPPC8Q9Y2L5 1435 aa22.07■■□□□ 1.12
SRGAP3-212ENST00000520860 REREQ9P2R6 1566 aa22.07■■□□□ 1.12
SRGAP3-212ENST00000520860 DIP2CQ9Y2E4 1556 aa22.07■■□□□ 1.12
SRGAP3-212ENST00000520860 NCOA1Q15788 1441 aa22.06■■□□□ 1.12
SRGAP3-212ENST00000520860 ARHGAP5Q13017 1502 aa22.06■■□□□ 1.12
SRGAP3-212ENST00000520860 KIF14Q15058 1648 aa22.02■■□□□ 1.12
SRGAP3-212ENST00000520860 AGLP35573 1532 aa22.01■■□□□ 1.11
SRGAP3-212ENST00000520860 MLH3Q9UHC1 1453 aa22.01■■□□□ 1.11
SRGAP3-212ENST00000520860 CNTLNQ9NXG0 1405 aa22■■□□□ 1.11
SRGAP3-212ENST00000520860 ABCA6Q8N139 1617 aa22■■□□□ 1.11
SRGAP3-212ENST00000520860 UBAP1LF5GYI3 381 aa22■■□□□ 1.11
SRGAP3-212ENST00000520860 CLIP1P30622 1438 aa21.99■■□□□ 1.11
SRGAP3-212ENST00000520860 FMN1Q68DA7 1419 aa21.99■■□□□ 1.11
SRGAP3-212ENST00000520860 TROQ12816 1431 aaPredicted RBP21.98■■□□□ 1.11
SRGAP3-212ENST00000520860 CAMSAP1Q5T5Y3 1602 aa21.97■■□□□ 1.11
SRGAP3-212ENST00000520860 ZNF335Q9H4Z2 1342 aaPredicted RBP21.94■■□□□ 1.1
SRGAP3-212ENST00000520860 NPATQ14207 1427 aa21.94■■□□□ 1.1
SRGAP3-212ENST00000520860 NCKAP5LQ9HCH0 1330 aa21.92■■□□□ 1.1
SRGAP3-212ENST00000520860 CDC42BPBQ9Y5S2 1711 aa21.89■■□□□ 1.1
SRGAP3-212ENST00000520860 ABCC1P33527 1531 aa21.89■■□□□ 1.09
SRGAP3-212ENST00000520860 PKD2Q13563 968 aa21.88■■□□□ 1.09
SRGAP3-212ENST00000520860 MROH2AA6NES4 1674 aa21.87■■□□□ 1.09
SRGAP3-212ENST00000520860 ZMYM3Q14202 1370 aa21.87■■□□□ 1.09
SRGAP3-212ENST00000520860 ITSN2Q9NZM3 1697 aa21.86■■□□□ 1.09
SRGAP3-212ENST00000520860 PREX2Q70Z35 1606 aa21.85■■□□□ 1.09
SRGAP3-212ENST00000520860 KIDINS220Q9ULH0 1771 aa21.85■■□□□ 1.09
SRGAP3-212ENST00000520860 UBTFP17480 764 aaKnown RBP21.85■■□□□ 1.09
SRGAP3-212ENST00000520860 PLA2R1Q13018 1463 aa21.84■■□□□ 1.09
SRGAP3-212ENST00000520860 ARHGAP35Q9NRY4 1499 aa21.83■■□□□ 1.09
SRGAP3-212ENST00000520860 SCAF1Q9H7N4 1312 aaKnown RBP21.81■■□□□ 1.08
SRGAP3-212ENST00000520860 TCOF1Q13428 1488 aaKnown RBP21.8■■□□□ 1.08
SRGAP3-212ENST00000520860 EHMT2Q96KQ7 1210 aa21.8■■□□□ 1.08
SRGAP3-212ENST00000520860 PPP6R1Q9UPN7 881 aa21.8■■□□□ 1.08
SRGAP3-212ENST00000520860 ZNF142P52746 1687 aaPredicted RBP21.79■■□□□ 1.08
SRGAP3-212ENST00000520860 MED1Q15648 1581 aaPredicted RBP21.79■■□□□ 1.08
SRGAP3-212ENST00000520860 MYO3AQ8NEV4 1616 aa21.79■■□□□ 1.08
SRGAP3-212ENST00000520860 SUPT6HQ7KZ85 1726 aaKnown RBP21.78■■□□□ 1.08
SRGAP3-212ENST00000520860 HSPA1LP34931 641 aa21.78■■□□□ 1.08
SRGAP3-212ENST00000520860 CEP170BQ9Y4F5 1589 aaPredicted RBP21.78■■□□□ 1.08
SRGAP3-212ENST00000520860 SAMD9LQ8IVG5 1584 aa21.77■■□□□ 1.08
SRGAP3-212ENST00000520860 SPAG9O60271 1321 aaKnown RBP21.77■■□□□ 1.07
SRGAP3-212ENST00000520860 PIP4K2BP78356 416 aa21.76■■□□□ 1.07
SRGAP3-212ENST00000520860 LRRIQ1Q96JM4 1722 aa21.76■■□□□ 1.07
SRGAP3-212ENST00000520860 TOM1O60784 492 aa21.75■■□□□ 1.07
SRGAP3-212ENST00000520860 ZNF777Q9ULD5 760 aaPredicted RBP21.75■■□□□ 1.07
SRGAP3-212ENST00000520860 CLTCQ00610 1675 aaKnown RBP21.75■■□□□ 1.07
SRGAP3-212ENST00000520860 PTPRKQ15262 1439 aa21.74■■□□□ 1.07
SRGAP3-212ENST00000520860 CCDC18Q5T9S5 1454 aa21.72■■□□□ 1.07
SRGAP3-212ENST00000520860 PHF23Q9BUL5 403 aaPredicted RBP21.72■■□□□ 1.07
SRGAP3-212ENST00000520860 CDC42BPAQ5VT25 1732 aa21.72■■□□□ 1.07
SRGAP3-212ENST00000520860 SYCP2Q9BX26 1530 aa21.7■■□□□ 1.07
SRGAP3-212ENST00000520860 GGT6Q6P531 493 aa21.7■■□□□ 1.06
SRGAP3-212ENST00000520860 ATP7AQ04656 1500 aa21.69■■□□□ 1.06
SRGAP3-212ENST00000520860 A2MP01023 1474 aa21.68■■□□□ 1.06
SRGAP3-212ENST00000520860 CPS1P31327 1500 aa21.68■■□□□ 1.06
SRGAP3-212ENST00000520860 PLXNC1O60486 1568 aa21.67■■□□□ 1.06
SRGAP3-212ENST00000520860 A2ML1A8K2U0 1454 aa21.67■■□□□ 1.06
SRGAP3-212ENST00000520860 HNRNPMP52272 730 aaKnown RBP eCLIP21.67■■□□□ 1.06
SRGAP3-212ENST00000520860 CASKIN1Q8WXD9 1431 aa21.65■■□□□ 1.06
SRGAP3-212ENST00000520860 SHANK2Q9UPX8 1470 aa21.63■■□□□ 1.05
SRGAP3-212ENST00000520860 DNMT1P26358 1616 aaKnown RBP21.62■■□□□ 1.05
SRGAP3-212ENST00000520860 INO80Q9ULG1 1556 aaPredicted RBP21.62■■□□□ 1.05
SRGAP3-212ENST00000520860 PLEKHH2Q8IVE3 1493 aa21.62■■□□□ 1.05
SRGAP3-212ENST00000520860 KIAA1107Q9UPP5 1409 aa21.62■■□□□ 1.05
SRGAP3-212ENST00000520860 GPATCH8Q9UKJ3 1502 aaKnown RBP21.61■■□□□ 1.05
SRGAP3-212ENST00000520860 POLR1AO95602 1720 aaPredicted RBP21.6■■□□□ 1.05
SRGAP3-212ENST00000520860 CFDP1Q9UEE9 299 aaPredicted RBP21.59■■□□□ 1.05
SRGAP3-212ENST00000520860 NEURL4Q96JN8 1562 aa21.57■■□□□ 1.04
SRGAP3-212ENST00000520860 TNRQ92752 1358 aa21.56■■□□□ 1.04
SRGAP3-212ENST00000520860 ANKLE2Q86XL3 938 aa21.55■■□□□ 1.04
SRGAP3-212ENST00000520860 ADGBQ8N7X0 1667 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms