RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 BBXQ8WY36 941 aaPredicted RBP13.28□□□□□ -0.28
PDGFRB-207ENST00000520579 ARHGAP35Q9NRY4 1499 aa13.28□□□□□ -0.28
PDGFRB-207ENST00000520579 NCBP3Q53F19 620 aaKnown RBP13.27□□□□□ -0.28
PDGFRB-207ENST00000520579 RCAN3Q9UKA8 241 aa13.27□□□□□ -0.28
PDGFRB-207ENST00000520579 NBPF8Q3BBV2 869 aa13.27□□□□□ -0.29
PDGFRB-207ENST00000520579 AMER1Q5JTC6 1135 aaPredicted RBP13.27□□□□□ -0.29
PDGFRB-207ENST00000520579 KIF7Q2M1P5 1343 aa13.27□□□□□ -0.29
PDGFRB-207ENST00000520579 BACH2Q9BYV9 841 aa13.26□□□□□ -0.29
PDGFRB-207ENST00000520579 TCERG1O14776 1098 aaKnown RBP13.26□□□□□ -0.29
PDGFRB-207ENST00000520579 HAP1P54257 671 aaPredicted RBP13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 RRP1P56182 461 aaKnown RBP13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 DCAF11Q8TEB1 546 aa13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 CRBNQ96SW2 442 aa13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 NAP1L2Q9ULW6 460 aaPredicted RBP13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 MTUS2Q5JR59 1369 aa13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 ARID3AQ99856 593 aa13.25□□□□□ -0.29
PDGFRB-207ENST00000520579 CCDC7Q96M83 1385 aa13.24□□□□□ -0.29
PDGFRB-207ENST00000520579 CNTLNQ9NXG0 1405 aa13.24□□□□□ -0.29
PDGFRB-207ENST00000520579 FHOD3Q2V2M9 1422 aa13.23□□□□□ -0.29
PDGFRB-207ENST00000520579 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
PDGFRB-207ENST00000520579 POGKQ9P215 609 aa13.22□□□□□ -0.29
PDGFRB-207ENST00000520579 USP35Q9P2H5 1018 aa13.22□□□□□ -0.29
PDGFRB-207ENST00000520579 DDRGK1Q96HY6 314 aa13.21□□□□□ -0.29
PDGFRB-207ENST00000520579 KIF27Q86VH2 1401 aa13.21□□□□□ -0.29
PDGFRB-207ENST00000520579 SLC4A1APQ9BWU0 796 aaKnown RBP13.21□□□□□ -0.3
PDGFRB-207ENST00000520579 AQRO60306 1485 aaKnown RBP eCLIP13.2□□□□□ -0.3
PDGFRB-207ENST00000520579 CC2D1BQ5T0F9 858 aaKnown RBP13.2□□□□□ -0.3
PDGFRB-207ENST00000520579 C20orf194Q5TEA3 1177 aa13.2□□□□□ -0.3
PDGFRB-207ENST00000520579 MPHOSPH9Q99550 1183 aa13.2□□□□□ -0.3
PDGFRB-207ENST00000520579 CUX2O14529 1486 aa13.19□□□□□ -0.3
PDGFRB-207ENST00000520579 LRRC9Q6ZRR7 1453 aa13.18□□□□□ -0.3
PDGFRB-207ENST00000520579 WASHC2CQ9Y4E1 1318 aa13.18□□□□□ -0.3
PDGFRB-207ENST00000520579 ZNF777Q9ULD5 760 aaPredicted RBP13.16□□□□□ -0.3
PDGFRB-207ENST00000520579 RRP9O43818 475 aaKnown RBP13.16□□□□□ -0.3
PDGFRB-207ENST00000520579 PRXQ9BXM0 1461 aa13.16□□□□□ -0.3
PDGFRB-207ENST00000520579 RRAGDQ9NQL2 400 aaPredicted RBP13.15□□□□□ -0.3
PDGFRB-207ENST00000520579 CANXP27824 592 aaKnown RBP13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 SMG6Q86US8 1419 aaKnown RBP13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 FHAD1B1AJZ9 1412 aa13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 PLCD3Q8N3E9 789 aa13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 PTPRKQ15262 1439 aa13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 PNISRQ8TF01 805 aaKnown RBP13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 CHMP4AQ9BY43 222 aa13.14□□□□□ -0.31
PDGFRB-207ENST00000520579 CARMIL1Q5VZK9 1371 aa13.12□□□□□ -0.31
PDGFRB-207ENST00000520579 ZBTB7CA1YPR0 619 aa13.12□□□□□ -0.31
PDGFRB-207ENST00000520579 CC2D2AQ9P2K1 1620 aa13.11□□□□□ -0.31
PDGFRB-207ENST00000520579 PNNQ9H307 717 aaKnown RBP13.11□□□□□ -0.31
PDGFRB-207ENST00000520579 FAM43AQ8N2R8 423 aa13.11□□□□□ -0.31
PDGFRB-207ENST00000520579 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
PDGFRB-207ENST00000520579 CARD11Q9BXL7 1154 aa13.1□□□□□ -0.31
PDGFRB-207ENST00000520579 PLPPR3Q6T4P5 718 aa13.09□□□□□ -0.31
PDGFRB-207ENST00000520579 PANK2Q9BZ23 570 aa13.08□□□□□ -0.32
PDGFRB-207ENST00000520579 TIAM1Q13009 1591 aa13.08□□□□□ -0.32
PDGFRB-207ENST00000520579 UACAQ9BZF9 1416 aa13.08□□□□□ -0.32
PDGFRB-207ENST00000520579 RGL3Q3MIN7 710 aa13.08□□□□□ -0.32
PDGFRB-207ENST00000520579 ST20-MTHFSA0A0A6YYL1 179 aa13.06□□□□□ -0.32
PDGFRB-207ENST00000520579 FMN1Q68DA7 1419 aa13.05□□□□□ -0.32
PDGFRB-207ENST00000520579 FGD6Q6ZV73 1430 aa13.05□□□□□ -0.32
PDGFRB-207ENST00000520579 TULP1O00294 542 aaPredicted RBP13.05□□□□□ -0.32
PDGFRB-207ENST00000520579 MS4A1P11836 297 aa13.05□□□□□ -0.32
PDGFRB-207ENST00000520579 IGF1RP08069 1367 aa13.04□□□□□ -0.32
PDGFRB-207ENST00000520579 FAM161AQ3B820 660 aa13.03□□□□□ -0.32
PDGFRB-207ENST00000520579 CCDC146Q8IYE0 955 aa13.03□□□□□ -0.32
PDGFRB-207ENST00000520579 NESP48681 1621 aa13.02□□□□□ -0.32
PDGFRB-207ENST00000520579 BRD2P25440 801 aaKnown RBP13.02□□□□□ -0.33
PDGFRB-207ENST00000520579 NAIPQ13075 1403 aa13.02□□□□□ -0.33
PDGFRB-207ENST00000520579 ZNF644Q9H582 1327 aaPredicted RBP13.02□□□□□ -0.33
PDGFRB-207ENST00000520579 CADPSQ9ULU8 1353 aa13.02□□□□□ -0.33
PDGFRB-207ENST00000520579 NCOA1Q15788 1441 aa13.02□□□□□ -0.33
PDGFRB-207ENST00000520579 NEUROD2Q15784 382 aa13.01□□□□□ -0.33
PDGFRB-207ENST00000520579 USP47Q96K76 1375 aa13.01□□□□□ -0.33
PDGFRB-207ENST00000520579 SEC24BO95487 1268 aa13□□□□□ -0.33
PDGFRB-207ENST00000520579 FOXD4L1Q9NU39 408 aa13□□□□□ -0.33
PDGFRB-207ENST00000520579 ZHX1Q9UKY1 873 aaPredicted RBP13□□□□□ -0.33
PDGFRB-207ENST00000520579 RNF123Q5XPI4 1314 aa12.99□□□□□ -0.33
PDGFRB-207ENST00000520579 ERICH3Q5RHP9 1530 aa12.99□□□□□ -0.33
PDGFRB-207ENST00000520579 VGLL3A8MV65 326 aa12.98□□□□□ -0.33
PDGFRB-207ENST00000520579 GOLGA6L3A6NEY3 463 aa12.98□□□□□ -0.33
PDGFRB-207ENST00000520579 PKD2Q13563 968 aa12.98□□□□□ -0.33
PDGFRB-207ENST00000520579 FBLN2P98095 1184 aa12.97□□□□□ -0.33
PDGFRB-207ENST00000520579 MAPK8IP2Q13387 824 aaPredicted RBP12.97□□□□□ -0.33
PDGFRB-207ENST00000520579 C8orf34Q49A92 452 aa12.97□□□□□ -0.33
PDGFRB-207ENST00000520579 CFTRP13569 1480 aa12.96□□□□□ -0.34
PDGFRB-207ENST00000520579 ZFP91Q96JP5 570 aaPredicted RBP12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 HFM1A2PYH4 1435 aa12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 BCL2L13Q9BXK5 485 aa12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 MYBBP1AQ9BQG0 1328 aaKnown RBP12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 GTF2E1P29083 439 aaPredicted RBP12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 BECN1Q14457 450 aa12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 PCF11O94913 1555 aaKnown RBP12.95□□□□□ -0.34
PDGFRB-207ENST00000520579 WDR43Q15061 677 aaKnown RBP eCLIP12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 TRIM44Q96DX7 344 aaPredicted RBP12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 CUX1P39880 1505 aa12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 TOP2BQ02880 1626 aa12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 CLUAP1Q96AJ1 413 aa12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 HMGXB3Q12766 1538 aa12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 BCAR3O75815 825 aa12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 XRCC6P12956 609 aaKnown RBP eCLIP12.94□□□□□ -0.34
PDGFRB-207ENST00000520579 DHX29Q7Z478 1369 aaKnown RBP12.93□□□□□ -0.34
PDGFRB-207ENST00000520579 L1TD1Q5T7N2 865 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms