RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 RSPH6AQ9H0K4 717 aa17.11■□□□□ 0.33
TCOF1-213ENST00000514442 TIMELESSQ9UNS1 1208 aa17.11■□□□□ 0.33
TCOF1-213ENST00000514442 FGD5Q6ZNL6 1462 aa17.11■□□□□ 0.33
TCOF1-213ENST00000514442 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
TCOF1-213ENST00000514442 TMF1P82094 1093 aa17.09■□□□□ 0.33
TCOF1-213ENST00000514442 EFCAB2Q5VUJ9 269 aa17.09■□□□□ 0.33
TCOF1-213ENST00000514442 BECN1Q14457 450 aa17.08■□□□□ 0.32
TCOF1-213ENST00000514442 ANKRD30AQ9BXX3 1397 aa17.07■□□□□ 0.32
TCOF1-213ENST00000514442 TRIM44Q96DX7 344 aaPredicted RBP17.06■□□□□ 0.32
TCOF1-213ENST00000514442 DHX57Q6P158 1386 aaKnown RBP17.05■□□□□ 0.32
TCOF1-213ENST00000514442 IGF1RP08069 1367 aa17.04■□□□□ 0.32
TCOF1-213ENST00000514442 LMOD2Q6P5Q4 547 aa17.04■□□□□ 0.32
TCOF1-213ENST00000514442 CCDC18Q5T9S5 1454 aa17.03■□□□□ 0.32
TCOF1-213ENST00000514442 L1TD1Q5T7N2 865 aaKnown RBP17.03■□□□□ 0.32
TCOF1-213ENST00000514442 STK26Q9P289 416 aa17.03■□□□□ 0.32
TCOF1-213ENST00000514442 MYH16Q9H6N6 1097 aa17.03■□□□□ 0.32
TCOF1-213ENST00000514442 MSH5O43196 834 aa17.02■□□□□ 0.32
TCOF1-213ENST00000514442 U2SURPO15042 1029 aaKnown RBP17.02■□□□□ 0.31
TCOF1-213ENST00000514442 MAPK8IP3Q9UPT6 1336 aa17.02■□□□□ 0.31
TCOF1-213ENST00000514442 KIF3BO15066 747 aa17.01■□□□□ 0.31
TCOF1-213ENST00000514442 SRPK2P78362 688 aaKnown RBP17.01■□□□□ 0.31
TCOF1-213ENST00000514442 NCAPD3P42695 1498 aa17.01■□□□□ 0.31
TCOF1-213ENST00000514442 L3MBTL2Q969R5 705 aa17■□□□□ 0.31
TCOF1-213ENST00000514442 GAPVD1Q14C86 1478 aa17■□□□□ 0.31
TCOF1-213ENST00000514442 HAP1P54257 671 aaPredicted RBP16.99■□□□□ 0.31
TCOF1-213ENST00000514442 TCERG1O14776 1098 aaKnown RBP16.99■□□□□ 0.31
TCOF1-213ENST00000514442 SOX12O15370 315 aa16.99■□□□□ 0.31
TCOF1-213ENST00000514442 ROCK2O75116 1388 aaKnown RBP16.99■□□□□ 0.31
TCOF1-213ENST00000514442 NUDCQ9Y266 331 aa16.98■□□□□ 0.31
TCOF1-213ENST00000514442 FRAT1Q92837 279 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-213ENST00000514442 GSE1Q14687 1217 aa16.96■□□□□ 0.31
TCOF1-213ENST00000514442 SPAG9O60271 1321 aaKnown RBP16.95■□□□□ 0.3
TCOF1-213ENST00000514442 IL27Q8NEV9 243 aa16.95■□□□□ 0.3
TCOF1-213ENST00000514442 FTSJ3Q8IY81 847 aaKnown RBP16.95■□□□□ 0.3
TCOF1-213ENST00000514442 NUTM2DQ5VT03 806 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-213ENST00000514442 AQRO60306 1485 aaKnown RBP eCLIP16.94■□□□□ 0.35e-7■■■■■ 41.2
TCOF1-213ENST00000514442 VSIG10Q8N0Z9 540 aa16.94■□□□□ 0.3
TCOF1-213ENST00000514442 MORC1Q86VD1 984 aa16.93■□□□□ 0.3
TCOF1-213ENST00000514442 PKNOX2Q96KN3 472 aa16.93■□□□□ 0.3
TCOF1-213ENST00000514442 PTPRGP23470 1445 aa16.93■□□□□ 0.3
TCOF1-213ENST00000514442 PNNQ9H307 717 aaKnown RBP16.92■□□□□ 0.3
TCOF1-213ENST00000514442 HSP90AA2PQ14568 343 aaPredicted RBP16.89■□□□□ 0.3
TCOF1-213ENST00000514442 NESP48681 1621 aa16.89■□□□□ 0.29
TCOF1-213ENST00000514442 SYNJ1O43426 1573 aa16.89■□□□□ 0.29
TCOF1-213ENST00000514442 KTN1Q86UP2 1357 aaKnown RBP16.88■□□□□ 0.29
TCOF1-213ENST00000514442 RGS3P49796 1198 aa16.87■□□□□ 0.29
TCOF1-213ENST00000514442 HDGFP51858 240 aaKnown RBP16.87■□□□□ 0.29
TCOF1-213ENST00000514442 KIF21BO75037 1637 aa16.87■□□□□ 0.29
TCOF1-213ENST00000514442 UBE2Q2Q8WVN8 375 aa16.86■□□□□ 0.29
TCOF1-213ENST00000514442 WASHC2CQ9Y4E1 1318 aa16.86■□□□□ 0.29
TCOF1-213ENST00000514442 RSPH4AQ5TD94 716 aa16.85■□□□□ 0.29
TCOF1-213ENST00000514442 ZNF644Q9H582 1327 aaPredicted RBP16.84■□□□□ 0.29
TCOF1-213ENST00000514442 PAK3O75914 559 aaPredicted RBP16.83■□□□□ 0.28
TCOF1-213ENST00000514442 CFTRP13569 1480 aa16.82■□□□□ 0.28
TCOF1-213ENST00000514442 CYB5RLQ6IPT4 315 aa16.82■□□□□ 0.28
TCOF1-213ENST00000514442 PHLDB1Q86UU1 1377 aa16.81■□□□□ 0.28
TCOF1-213ENST00000514442 HDGFL2Q7Z4V5 671 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-213ENST00000514442 PDE4AP27815 886 aa16.79■□□□□ 0.28
TCOF1-213ENST00000514442 CC2D2AQ9P2K1 1620 aa16.79■□□□□ 0.28
TCOF1-213ENST00000514442 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
TCOF1-213ENST00000514442 ST20-MTHFSA0A0A6YYL1 179 aa16.77■□□□□ 0.28
TCOF1-213ENST00000514442 CCDC144AA2RUR9 1427 aa16.77■□□□□ 0.28
TCOF1-213ENST00000514442 TRAK1Q9UPV9 953 aa16.76■□□□□ 0.27
TCOF1-213ENST00000514442 FGD6Q6ZV73 1430 aa16.76■□□□□ 0.27
TCOF1-213ENST00000514442 RALBP1Q15311 655 aa16.76■□□□□ 0.27
TCOF1-213ENST00000514442 PRDM2Q13029 1718 aa16.76■□□□□ 0.27
TCOF1-213ENST00000514442 U2AF1L5P0DN76 240 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-213ENST00000514442 U2AF1Q01081 240 aaKnown RBP eCLIP16.76■□□□□ 0.27
TCOF1-213ENST00000514442 GOLGA6L22H0YM25 854 aa16.76■□□□□ 0.27
TCOF1-213ENST00000514442 ARAP1Q96P48 1450 aa16.75■□□□□ 0.27
TCOF1-213ENST00000514442 BRPF3Q9ULD4 1205 aa16.75■□□□□ 0.27
TCOF1-213ENST00000514442 OSCARQ8IYS5 282 aa16.75■□□□□ 0.27
TCOF1-213ENST00000514442 EIF3AQ14152 1382 aaKnown RBP16.75■□□□□ 0.27
TCOF1-213ENST00000514442 LRRC9Q6ZRR7 1453 aa16.74■□□□□ 0.27
TCOF1-213ENST00000514442 GOLGA6L3A6NEY3 463 aa16.74■□□□□ 0.27
TCOF1-213ENST00000514442 MYOM3Q5VTT5 1437 aa16.73■□□□□ 0.27
TCOF1-213ENST00000514442 CUX1P39880 1505 aa16.73■□□□□ 0.27
TCOF1-213ENST00000514442 NCLP19338 710 aaKnown RBP16.72■□□□□ 0.27
TCOF1-213ENST00000514442 RCAN3Q9UKA8 241 aa16.72■□□□□ 0.27
TCOF1-213ENST00000514442 NUTM2FA1L443 756 aa16.72■□□□□ 0.27
TCOF1-213ENST00000514442 CCDC146Q8IYE0 955 aa16.71■□□□□ 0.27
TCOF1-213ENST00000514442 GRIN2BQ13224 1484 aa16.71■□□□□ 0.26
TCOF1-213ENST00000514442 MS4A1P11836 297 aa16.7■□□□□ 0.26
TCOF1-213ENST00000514442 MSNP26038 577 aaKnown RBP16.7■□□□□ 0.26
TCOF1-213ENST00000514442 CASKIN1Q8WXD9 1431 aa16.69■□□□□ 0.26
TCOF1-213ENST00000514442 FAM43AQ8N2R8 423 aa16.69■□□□□ 0.26
TCOF1-213ENST00000514442 NCOA2Q15596 1464 aa16.68■□□□□ 0.26
TCOF1-213ENST00000514442 ERICH3Q5RHP9 1530 aa16.68■□□□□ 0.26
TCOF1-213ENST00000514442 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
TCOF1-213ENST00000514442 TOPBP1Q92547 1522 aa16.68■□□□□ 0.26
TCOF1-213ENST00000514442 TOP2BQ02880 1626 aa16.68■□□□□ 0.26
TCOF1-213ENST00000514442 NFKBIBQ15653 356 aa16.67■□□□□ 0.26
TCOF1-213ENST00000514442 PANK3Q9H999 370 aa16.67■□□□□ 0.26
TCOF1-213ENST00000514442 POLA1P09884 1462 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-213ENST00000514442 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.66■□□□□ 0.26
TCOF1-213ENST00000514442 CASC1Q6TDU7 716 aa16.66■□□□□ 0.26
TCOF1-213ENST00000514442 RTF1Q92541 710 aaKnown RBP16.66■□□□□ 0.26
TCOF1-213ENST00000514442 USP47Q96K76 1375 aa16.65■□□□□ 0.26
TCOF1-213ENST00000514442 OS9Q13438 667 aaPredicted RBP16.65■□□□□ 0.26
TCOF1-213ENST00000514442 SLC4A3P48751 1232 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms