RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-218ENST00000513284 ARHGEF12Q9NZN5 1544 aa19.16■□□□□ 0.66
RNF4-218ENST00000513284 RANGAP1P46060 587 aaPredicted RBP19.16■□□□□ 0.66
RNF4-218ENST00000513284 CSRNP3Q8WYN3 585 aa19.16■□□□□ 0.66
RNF4-218ENST00000513284 FER1L4A9Z1Z3 1794 aa19.16■□□□□ 0.66
RNF4-218ENST00000513284 SCAPERQ9BY12 1400 aa19.15■□□□□ 0.66
RNF4-218ENST00000513284 DMRT2Q9Y5R5 561 aa19.14■□□□□ 0.65
RNF4-218ENST00000513284 ATP10AO60312 1499 aa19.13■□□□□ 0.65
RNF4-218ENST00000513284 CFAP74Q9C0B2 1584 aa19.12■□□□□ 0.65
RNF4-218ENST00000513284 PREX1Q8TCU6 1659 aa19.11■□□□□ 0.65
RNF4-218ENST00000513284 PLCH2O75038 1416 aa19.1■□□□□ 0.65
RNF4-218ENST00000513284 C9orf84Q5VXU9 1444 aa19.06■□□□□ 0.64
RNF4-218ENST00000513284 PTPRTO14522 1441 aa19.05■□□□□ 0.64
RNF4-218ENST00000513284 SPATA31D1Q6ZQQ2 1576 aa19.04■□□□□ 0.64
RNF4-218ENST00000513284 AFAP1Q8N556 730 aa19.04■□□□□ 0.64
RNF4-218ENST00000513284 SETD1BQ9UPS6 1966 aaKnown RBP19.04■□□□□ 0.64
RNF4-218ENST00000513284 LTBP4Q8N2S1 1624 aa19.03■□□□□ 0.64
RNF4-218ENST00000513284 EFCAB2Q5VUJ9 269 aa19.03■□□□□ 0.64
RNF4-218ENST00000513284 CDK13Q14004 1512 aaKnown RBP19.03■□□□□ 0.64
RNF4-218ENST00000513284 UHRF1BP1Q6BDS2 1440 aa19.02■□□□□ 0.64
RNF4-218ENST00000513284 C3P01024 1663 aa18.93■□□□□ 0.62
RNF4-218ENST00000513284 TRAPPC8Q9Y2L5 1435 aa18.92■□□□□ 0.62
RNF4-218ENST00000513284 ZNF518AQ6AHZ1 1483 aa18.92■□□□□ 0.62
RNF4-218ENST00000513284 KDM5CP41229 1560 aa18.92■□□□□ 0.62
RNF4-218ENST00000513284 IQSEC2Q5JU85 1478 aa18.91■□□□□ 0.62
RNF4-218ENST00000513284 DIP2CQ9Y2E4 1556 aa18.91■□□□□ 0.62
RNF4-218ENST00000513284 NCOA1Q15788 1441 aa18.91■□□□□ 0.62
RNF4-218ENST00000513284 MYO5CQ9NQX4 1742 aa18.89■□□□□ 0.61
RNF4-218ENST00000513284 ATP1B4Q9UN42 357 aaPredicted RBP18.89■□□□□ 0.61
RNF4-218ENST00000513284 REREQ9P2R6 1566 aa18.89■□□□□ 0.61
RNF4-218ENST00000513284 KIF14Q15058 1648 aa18.89■□□□□ 0.61
RNF4-218ENST00000513284 MYT1LQ9UL68 1186 aa18.88■□□□□ 0.61
RNF4-218ENST00000513284 MLH3Q9UHC1 1453 aa18.87■□□□□ 0.61
RNF4-218ENST00000513284 NCKAP5LQ9HCH0 1330 aa18.86■□□□□ 0.61
RNF4-218ENST00000513284 ABCA6Q8N139 1617 aa18.85■□□□□ 0.61
RNF4-218ENST00000513284 AGLP35573 1532 aa18.85■□□□□ 0.61
RNF4-218ENST00000513284 ZNF335Q9H4Z2 1342 aaPredicted RBP18.85■□□□□ 0.61
RNF4-218ENST00000513284 UBAP1LF5GYI3 381 aa18.84■□□□□ 0.61
RNF4-218ENST00000513284 CDK11AQ9UQ88 783 aaPredicted RBP18.84■□□□□ 0.61
RNF4-218ENST00000513284 ARHGAP5Q13017 1502 aa18.84■□□□□ 0.61
RNF4-218ENST00000513284 ESF1Q9H501 851 aaKnown RBP18.83■□□□□ 0.6
RNF4-218ENST00000513284 TROQ12816 1431 aaPredicted RBP18.83■□□□□ 0.6
RNF4-218ENST00000513284 EEA1Q15075 1411 aa18.83■□□□□ 0.6
RNF4-218ENST00000513284 CAMSAP1Q5T5Y3 1602 aa18.82■□□□□ 0.6
RNF4-218ENST00000513284 CDC42BPBQ9Y5S2 1711 aa18.8■□□□□ 0.6
RNF4-218ENST00000513284 ZMYM3Q14202 1370 aa18.8■□□□□ 0.6
RNF4-218ENST00000513284 NPATQ14207 1427 aa18.77■□□□□ 0.6
RNF4-218ENST00000513284 FMN1Q68DA7 1419 aa18.77■□□□□ 0.6
RNF4-218ENST00000513284 CNTLNQ9NXG0 1405 aa18.77■□□□□ 0.6
RNF4-218ENST00000513284 KIDINS220Q9ULH0 1771 aa18.77■□□□□ 0.6
RNF4-218ENST00000513284 ARHGAP35Q9NRY4 1499 aa18.77■□□□□ 0.59
RNF4-218ENST00000513284 EHMT2Q96KQ7 1210 aa18.74■□□□□ 0.59
RNF4-218ENST00000513284 LRRIQ1Q96JM4 1722 aa18.74■□□□□ 0.59
RNF4-218ENST00000513284 ABCC1P33527 1531 aa18.74■□□□□ 0.59
RNF4-218ENST00000513284 HSPA1LP34931 641 aa18.73■□□□□ 0.59
RNF4-218ENST00000513284 PKD2Q13563 968 aa18.72■□□□□ 0.59
RNF4-218ENST00000513284 CLIP1P30622 1438 aa18.71■□□□□ 0.59
RNF4-218ENST00000513284 TCOF1Q13428 1488 aaKnown RBP18.71■□□□□ 0.59
RNF4-218ENST00000513284 UBTFP17480 764 aaKnown RBP18.7■□□□□ 0.58
RNF4-218ENST00000513284 ITSN2Q9NZM3 1697 aa18.69■□□□□ 0.58
RNF4-218ENST00000513284 MROH2AA6NES4 1674 aa18.69■□□□□ 0.58
RNF4-218ENST00000513284 PLA2R1Q13018 1463 aa18.68■□□□□ 0.58
RNF4-218ENST00000513284 PREX2Q70Z35 1606 aa18.67■□□□□ 0.58
RNF4-218ENST00000513284 PTPRKQ15262 1439 aa18.67■□□□□ 0.58
RNF4-218ENST00000513284 HNRNPMP52272 730 aaKnown RBP eCLIP18.66■□□□□ 0.586e-9■■■■■ 27.4
RNF4-218ENST00000513284 SAMD9LQ8IVG5 1584 aa18.66■□□□□ 0.58
RNF4-218ENST00000513284 MED1Q15648 1581 aaPredicted RBP18.65■□□□□ 0.58
RNF4-218ENST00000513284 PIP4K2BP78356 416 aa18.65■□□□□ 0.58
RNF4-218ENST00000513284 PPP6R1Q9UPN7 881 aa18.65■□□□□ 0.58
RNF4-218ENST00000513284 ZNF777Q9ULD5 760 aaPredicted RBP18.63■□□□□ 0.57
RNF4-218ENST00000513284 SPAG9O60271 1321 aaKnown RBP18.63■□□□□ 0.57
RNF4-218ENST00000513284 CEP170BQ9Y4F5 1589 aaPredicted RBP18.62■□□□□ 0.57
RNF4-218ENST00000513284 MYO3AQ8NEV4 1616 aa18.62■□□□□ 0.57
RNF4-218ENST00000513284 ZNF142P52746 1687 aaPredicted RBP18.62■□□□□ 0.57
RNF4-218ENST00000513284 CLTCQ00610 1675 aaKnown RBP18.62■□□□□ 0.57
RNF4-218ENST00000513284 SUPT6HQ7KZ85 1726 aaKnown RBP18.62■□□□□ 0.57
RNF4-218ENST00000513284 CDC42BPAQ5VT25 1732 aa18.61■□□□□ 0.57
RNF4-218ENST00000513284 GGT6Q6P531 493 aa18.61■□□□□ 0.57
RNF4-218ENST00000513284 SCAF1Q9H7N4 1312 aaKnown RBP18.6■□□□□ 0.57
RNF4-218ENST00000513284 TOM1O60784 492 aa18.59■□□□□ 0.57
RNF4-218ENST00000513284 GPATCH8Q9UKJ3 1502 aaKnown RBP18.58■□□□□ 0.56
RNF4-218ENST00000513284 PLXNC1O60486 1568 aa18.57■□□□□ 0.56
RNF4-218ENST00000513284 A2MP01023 1474 aa18.57■□□□□ 0.56
RNF4-218ENST00000513284 SYCP2Q9BX26 1530 aa18.56■□□□□ 0.56
RNF4-218ENST00000513284 CASKIN1Q8WXD9 1431 aa18.56■□□□□ 0.56
RNF4-218ENST00000513284 DNMT1P26358 1616 aaKnown RBP18.55■□□□□ 0.56
RNF4-218ENST00000513284 ALKQ9UM73 1620 aa18.55■□□□□ 0.56
RNF4-218ENST00000513284 A2ML1A8K2U0 1454 aa18.54■□□□□ 0.56
RNF4-218ENST00000513284 SHANK2Q9UPX8 1470 aa18.54■□□□□ 0.56
RNF4-218ENST00000513284 FBXO31Q5XUX0 539 aaPredicted RBP18.54■□□□□ 0.56
RNF4-218ENST00000513284 ATP7AQ04656 1500 aa18.54■□□□□ 0.56
RNF4-218ENST00000513284 KIAA1107Q9UPP5 1409 aa18.53■□□□□ 0.56
RNF4-218ENST00000513284 NEURL4Q96JN8 1562 aa18.52■□□□□ 0.56
RNF4-218ENST00000513284 CCDC18Q5T9S5 1454 aa18.52■□□□□ 0.55
RNF4-218ENST00000513284 CPS1P31327 1500 aa18.51■□□□□ 0.55
RNF4-218ENST00000513284 INO80Q9ULG1 1556 aaPredicted RBP18.5■□□□□ 0.55
RNF4-218ENST00000513284 CFDP1Q9UEE9 299 aaPredicted RBP18.49■□□□□ 0.55
RNF4-218ENST00000513284 RGS17Q9UGC6 210 aaPredicted RBP18.49■□□□□ 0.55
RNF4-218ENST00000513284 PHF23Q9BUL5 403 aaPredicted RBP18.48■□□□□ 0.55
RNF4-218ENST00000513284 ZNF644Q9H582 1327 aaPredicted RBP18.48■□□□□ 0.55
RNF4-218ENST00000513284 VWDEQ8N2E2 1590 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms