RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 SLC4A1APQ9BWU0 796 aaKnown RBP10.17□□□□□ -0.78
NEDD9-208ENST00000504387 CNTLNQ9NXG0 1405 aa10.17□□□□□ -0.78
NEDD9-208ENST00000504387 FRAT1Q92837 279 aaPredicted RBP10.16□□□□□ -0.78
NEDD9-208ENST00000504387 CDCA7LQ96GN5 454 aa10.16□□□□□ -0.78
NEDD9-208ENST00000504387 FANCD2Q9BXW9 1451 aa10.15□□□□□ -0.78
NEDD9-208ENST00000504387 RGS3P49796 1198 aa10.13□□□□□ -0.79
NEDD9-208ENST00000504387 NFKBIBQ15653 356 aa10.13□□□□□ -0.79
NEDD9-208ENST00000504387 LAMC3Q9Y6N6 1575 aa10.13□□□□□ -0.79
NEDD9-208ENST00000504387 GSE1Q14687 1217 aa10.12□□□□□ -0.79
NEDD9-208ENST00000504387 UACAQ9BZF9 1416 aa10.12□□□□□ -0.79
NEDD9-208ENST00000504387 ZNF644Q9H582 1327 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-208ENST00000504387 RCAN3Q9UKA8 241 aa10.12□□□□□ -0.79
NEDD9-208ENST00000504387 FGD6Q6ZV73 1430 aa10.11□□□□□ -0.79
NEDD9-208ENST00000504387 RRP1P56182 461 aaKnown RBP10.11□□□□□ -0.79
NEDD9-208ENST00000504387 FRAT2O75474 233 aaPredicted RBP10.11□□□□□ -0.79
NEDD9-208ENST00000504387 BACH2Q9BYV9 841 aa10.11□□□□□ -0.79
NEDD9-208ENST00000504387 PCF11O94913 1555 aaKnown RBP10.1□□□□□ -0.79
NEDD9-208ENST00000504387 PPM1GO15355 546 aaPredicted RBP10.1□□□□□ -0.79
NEDD9-208ENST00000504387 SLC24A1O60721 1099 aa10.1□□□□□ -0.79
NEDD9-208ENST00000504387 NAIPQ13075 1403 aa10.1□□□□□ -0.79
NEDD9-208ENST00000504387 CRBNQ96SW2 442 aa10.09□□□□□ -0.79
NEDD9-208ENST00000504387 ARID4BQ4LE39 1312 aaPredicted RBP10.09□□□□□ -0.79
NEDD9-208ENST00000504387 TCERG1O14776 1098 aaKnown RBP10.09□□□□□ -0.79
NEDD9-208ENST00000504387 PNISRQ8TF01 805 aaKnown RBP10.09□□□□□ -0.79
NEDD9-208ENST00000504387 CC2D1BQ5T0F9 858 aaKnown RBP10.08□□□□□ -0.8
NEDD9-208ENST00000504387 C20orf194Q5TEA3 1177 aa10.08□□□□□ -0.8
NEDD9-208ENST00000504387 KIF21AQ7Z4S6 1674 aa10.08□□□□□ -0.8
NEDD9-208ENST00000504387 SMG6Q86US8 1419 aaKnown RBP10.08□□□□□ -0.8
NEDD9-208ENST00000504387 FMN1Q68DA7 1419 aa10.08□□□□□ -0.8
NEDD9-208ENST00000504387 DNMBPQ6XZF7 1577 aa10.07□□□□□ -0.8
NEDD9-208ENST00000504387 RGL3Q3MIN7 710 aa10.07□□□□□ -0.8
NEDD9-208ENST00000504387 SPRYD3Q8NCJ5 442 aa10.07□□□□□ -0.8
NEDD9-208ENST00000504387 TOPBP1Q92547 1522 aa10.06□□□□□ -0.8
NEDD9-208ENST00000504387 URB2Q14146 1524 aaKnown RBP10.06□□□□□ -0.8
NEDD9-208ENST00000504387 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.06□□□□□ -0.89e-10■□□□□ 9.9
NEDD9-208ENST00000504387 DCAF11Q8TEB1 546 aa10.05□□□□□ -0.8
NEDD9-208ENST00000504387 SLKQ9H2G2 1235 aaPredicted RBP10.05□□□□□ -0.8
NEDD9-208ENST00000504387 HFM1A2PYH4 1435 aa10.05□□□□□ -0.8
NEDD9-208ENST00000504387 NCOA1Q15788 1441 aa10.05□□□□□ -0.8
NEDD9-208ENST00000504387 UBE2Q2Q8WVN8 375 aa10.05□□□□□ -0.8
NEDD9-208ENST00000504387 NCOA2Q15596 1464 aa10.04□□□□□ -0.8
NEDD9-208ENST00000504387 CASKIN1Q8WXD9 1431 aa10.04□□□□□ -0.8
NEDD9-208ENST00000504387 CARD11Q9BXL7 1154 aa10.04□□□□□ -0.8
NEDD9-208ENST00000504387 CFDP1Q9UEE9 299 aaPredicted RBP10.04□□□□□ -0.8
NEDD9-208ENST00000504387 POLA1P09884 1462 aaPredicted RBP10.04□□□□□ -0.8
NEDD9-208ENST00000504387 ST20-MTHFSA0A0A6YYL1 179 aa10.03□□□□□ -0.8
NEDD9-208ENST00000504387 USP35Q9P2H5 1018 aa10.03□□□□□ -0.8
NEDD9-208ENST00000504387 GZF1Q9H116 711 aaPredicted RBP10.02□□□□□ -0.81
NEDD9-208ENST00000504387 PKD2Q13563 968 aa10.02□□□□□ -0.81
NEDD9-208ENST00000504387 PDS5BQ9NTI5 1447 aa10.02□□□□□ -0.81
NEDD9-208ENST00000504387 WASHC2CQ9Y4E1 1318 aa10.02□□□□□ -0.81
NEDD9-208ENST00000504387 KDM5BQ9UGL1 1544 aa10.02□□□□□ -0.81
NEDD9-208ENST00000504387 MYOM3Q5VTT5 1437 aa10.01□□□□□ -0.81
NEDD9-208ENST00000504387 PTPN23Q9H3S7 1636 aa10.01□□□□□ -0.81
NEDD9-208ENST00000504387 POGKQ9P215 609 aa10.01□□□□□ -0.81
NEDD9-208ENST00000504387 USP47Q96K76 1375 aa10□□□□□ -0.81
NEDD9-208ENST00000504387 DDRGK1Q96HY6 314 aa10□□□□□ -0.81
NEDD9-208ENST00000504387 RNF123Q5XPI4 1314 aa10□□□□□ -0.81
NEDD9-208ENST00000504387 FYCO1Q9BQS8 1478 aa10□□□□□ -0.81
NEDD9-208ENST00000504387 CHMP7Q8WUX9 453 aaPredicted RBP9.99□□□□□ -0.81
NEDD9-208ENST00000504387 DHX29Q7Z478 1369 aaKnown RBP9.99□□□□□ -0.81
NEDD9-208ENST00000504387 ABCA10Q8WWZ4 1543 aa9.99□□□□□ -0.81
NEDD9-208ENST00000504387 NAP1L5Q96NT1 182 aaPredicted RBP9.98□□□□□ -0.81
NEDD9-208ENST00000504387 GAPVD1Q14C86 1478 aa9.98□□□□□ -0.81
NEDD9-208ENST00000504387 KDM6BO15054 1643 aa9.97□□□□□ -0.81
NEDD9-208ENST00000504387 VSIG10Q8N0Z9 540 aa9.97□□□□□ -0.81
NEDD9-208ENST00000504387 DENND4BO75064 1496 aaPredicted RBP9.97□□□□□ -0.81
NEDD9-208ENST00000504387 MAP3K1Q13233 1512 aa9.96□□□□□ -0.81
NEDD9-208ENST00000504387 SENP3Q9H4L4 574 aaPredicted RBP9.96□□□□□ -0.82
NEDD9-208ENST00000504387 CDK13Q14004 1512 aaKnown RBP9.95□□□□□ -0.82
NEDD9-208ENST00000504387 MS4A1P11836 297 aa9.95□□□□□ -0.82
NEDD9-208ENST00000504387 CCDC146Q8IYE0 955 aa9.94□□□□□ -0.82
NEDD9-208ENST00000504387 RRAGDQ9NQL2 400 aaPredicted RBP9.94□□□□□ -0.82
NEDD9-208ENST00000504387 TSPY4P0CV99 314 aa9.94□□□□□ -0.82
NEDD9-208ENST00000504387 TSPY10P0CW01 314 aa9.94□□□□□ -0.82
NEDD9-208ENST00000504387 TARBP1Q13395 1621 aaKnown RBP9.94□□□□□ -0.82
NEDD9-208ENST00000504387 MYBBP1AQ9BQG0 1328 aaKnown RBP9.93□□□□□ -0.82
NEDD9-208ENST00000504387 ANKRD30BQ9BXX2 1392 aa9.93□□□□□ -0.82
NEDD9-208ENST00000504387 HNRNPMP52272 730 aaKnown RBP eCLIP9.93□□□□□ -0.82
NEDD9-208ENST00000504387 ABCA5Q8WWZ7 1642 aa9.93□□□□□ -0.82
NEDD9-208ENST00000504387 SEC24BO95487 1268 aa9.92□□□□□ -0.82
NEDD9-208ENST00000504387 PKNOX2Q96KN3 472 aa9.92□□□□□ -0.82
NEDD9-208ENST00000504387 FAM161AQ3B820 660 aa9.92□□□□□ -0.82
NEDD9-208ENST00000504387 MRC2Q9UBG0 1479 aa9.91□□□□□ -0.82
NEDD9-208ENST00000504387 C8orf34Q49A92 452 aa9.91□□□□□ -0.82
NEDD9-208ENST00000504387 THOC2Q8NI27 1593 aaKnown RBP9.91□□□□□ -0.82
NEDD9-208ENST00000504387 ADAMTS8Q9UP79 889 aa9.91□□□□□ -0.82
NEDD9-208ENST00000504387 NUP155O75694 1391 aa9.91□□□□□ -0.82
NEDD9-208ENST00000504387 PLEKHD1A6NEE1 506 aa9.9□□□□□ -0.82
NEDD9-208ENST00000504387 NEUROD2Q15784 382 aa9.9□□□□□ -0.82
NEDD9-208ENST00000504387 PANK2Q9BZ23 570 aa9.9□□□□□ -0.82
NEDD9-208ENST00000504387 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.9□□□□□ -0.82
NEDD9-208ENST00000504387 NBPF1Q3BBV0 1214 aa9.9□□□□□ -0.82
NEDD9-208ENST00000504387 NLRP13Q86W25 1043 aa9.9□□□□□ -0.82
NEDD9-208ENST00000504387 SPATA31E1Q6ZUB1 1445 aa9.9□□□□□ -0.83
NEDD9-208ENST00000504387 RSPH6AQ9H0K4 717 aa9.9□□□□□ -0.83
NEDD9-208ENST00000504387 WDR62O43379 1518 aa9.89□□□□□ -0.83
NEDD9-208ENST00000504387 BCAR3O75815 825 aa9.89□□□□□ -0.83
NEDD9-208ENST00000504387 ARID3AQ99856 593 aa9.89□□□□□ -0.83
NEDD9-208ENST00000504387 KIF15Q9NS87 1388 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms