RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 CHIC2Q9UKJ5 165 aa23.17■■□□□ 1.3
COL6A1-206ENST00000498614 RRP7BPQ9NSQ0 103 aa23.16■■□□□ 1.3
COL6A1-206ENST00000498614 ANP32EQ9BTT0 268 aa23.15■■□□□ 1.3
COL6A1-206ENST00000498614 TCOF1Q13428 1488 aaKnown RBP23.15■■□□□ 1.3
COL6A1-206ENST00000498614 ABCA8O94911 1581 aa23.12■■□□□ 1.29
COL6A1-206ENST00000498614 GCC2Q8IWJ2 1684 aa23.09■■□□□ 1.29
COL6A1-206ENST00000498614 ATP10BO94823 1461 aa23.06■■□□□ 1.28
COL6A1-206ENST00000498614 KDM6BO15054 1643 aa23.06■■□□□ 1.28
COL6A1-206ENST00000498614 MIA2Q96PC5 1412 aa23.06■■□□□ 1.28
COL6A1-206ENST00000498614 CYB5RLQ6IPT4 315 aa23.05■■□□□ 1.28
COL6A1-206ENST00000498614 TRIM52Q96A61 297 aa23.04■■□□□ 1.28
COL6A1-206ENST00000498614 CCER2I3L3R5 266 aa23.03■■□□□ 1.28
COL6A1-206ENST00000498614 AKNAQ7Z591 1439 aa23■■□□□ 1.27
COL6A1-206ENST00000498614 DENND4BO75064 1496 aaPredicted RBP23■■□□□ 1.27
COL6A1-206ENST00000498614 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
COL6A1-206ENST00000498614 ABCC2Q92887 1545 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 KDM5BQ9UGL1 1544 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 ANP32CO43423 234 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 NEFLP07196 543 aa22.99■■□□□ 1.27
COL6A1-206ENST00000498614 PLEKHD1A6NEE1 506 aa22.98■■□□□ 1.27
COL6A1-206ENST00000498614 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
COL6A1-206ENST00000498614 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
COL6A1-206ENST00000498614 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
COL6A1-206ENST00000498614 ADCY10Q96PN6 1610 aa22.94■■□□□ 1.26
COL6A1-206ENST00000498614 DAPK1P53355 1430 aa22.94■■□□□ 1.26
COL6A1-206ENST00000498614 ZNF644Q9H582 1327 aaPredicted RBP22.93■■□□□ 1.26
COL6A1-206ENST00000498614 MPHOSPH9Q99550 1183 aa22.92■■□□□ 1.26
COL6A1-206ENST00000498614 RBM19Q9Y4C8 960 aaKnown RBP22.91■■□□□ 1.26
COL6A1-206ENST00000498614 TROQ12816 1431 aaPredicted RBP22.9■■□□□ 1.26
COL6A1-206ENST00000498614 DNMT1P26358 1616 aaKnown RBP22.9■■□□□ 1.26
COL6A1-206ENST00000498614 FOXD1Q16676 465 aa22.9■■□□□ 1.26
COL6A1-206ENST00000498614 UHRF1BP1LA0JNW5 1464 aa22.9■■□□□ 1.26
COL6A1-206ENST00000498614 ABCC5O15440 1437 aa22.89■■□□□ 1.25
COL6A1-206ENST00000498614 ZCCHC11Q5TAX3 1644 aaKnown RBP22.87■■□□□ 1.25
COL6A1-206ENST00000498614 KIF14Q15058 1648 aa22.86■■□□□ 1.25
COL6A1-206ENST00000498614 ROCK1Q13464 1354 aa22.86■■□□□ 1.25
COL6A1-206ENST00000498614 NPM1P06748 294 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL6A1-206ENST00000498614 HSPA5P11021 654 aaKnown RBP22.81■■□□□ 1.24
COL6A1-206ENST00000498614 L3MBTL2Q969R5 705 aa22.8■■□□□ 1.24
COL6A1-206ENST00000498614 CAMSAP2Q08AD1 1489 aa22.78■■□□□ 1.24
COL6A1-206ENST00000498614 CFDP1Q9UEE9 299 aaPredicted RBP22.78■■□□□ 1.24
COL6A1-206ENST00000498614 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
COL6A1-206ENST00000498614 ITSN2Q9NZM3 1697 aa22.77■■□□□ 1.24
COL6A1-206ENST00000498614 ANKRD30BQ9BXX2 1392 aa22.76■■□□□ 1.23
COL6A1-206ENST00000498614 GPATCH8Q9UKJ3 1502 aaKnown RBP22.75■■□□□ 1.23
COL6A1-206ENST00000498614 SLC4A1APQ9BWU0 796 aaKnown RBP22.75■■□□□ 1.23
COL6A1-206ENST00000498614 WASHC2AQ641Q2 1341 aa22.75■■□□□ 1.23
COL6A1-206ENST00000498614 ASXL2Q76L83 1435 aa22.74■■□□□ 1.23
COL6A1-206ENST00000498614 EIF4G2P78344 907 aaKnown RBP eCLIP22.74■■□□□ 1.23
COL6A1-206ENST00000498614 RPRD2Q5VT52 1461 aaKnown RBP22.72■■□□□ 1.23
COL6A1-206ENST00000498614 HNRNPUQ00839 825 aaKnown RBP eCLIP22.71■■□□□ 1.23
COL6A1-206ENST00000498614 ABCC10Q5T3U5 1492 aa22.71■■□□□ 1.23
COL6A1-206ENST00000498614 ADGBQ8N7X0 1667 aa22.7■■□□□ 1.22
COL6A1-206ENST00000498614 WDR7Q9Y4E6 1490 aa22.69■■□□□ 1.22
COL6A1-206ENST00000498614 NCOA1Q15788 1441 aa22.69■■□□□ 1.22
COL6A1-206ENST00000498614 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.68■■□□□ 1.22
COL6A1-206ENST00000498614 TEX14Q8IWB6 1497 aa22.68■■□□□ 1.22
COL6A1-206ENST00000498614 TTC37Q6PGP7 1564 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 NBPF8Q3BBV2 869 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 CROCC2H7BZ55 1655 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 MSH5O43196 834 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 BCL11AQ9H165 835 aa22.67■■□□□ 1.22
COL6A1-206ENST00000498614 PZPP20742 1482 aa22.66■■□□□ 1.22
COL6A1-206ENST00000498614 IRX6P78412 446 aaPredicted RBP22.66■■□□□ 1.22
COL6A1-206ENST00000498614 CDC42BPAQ5VT25 1732 aa22.63■■□□□ 1.21
COL6A1-206ENST00000498614 ADGRL2O95490 1459 aa22.62■■□□□ 1.21
COL6A1-206ENST00000498614 C11orf95C9JLR9 678 aaPredicted RBP22.62■■□□□ 1.21
COL6A1-206ENST00000498614 ANKRD30AQ9BXX3 1397 aa22.6■■□□□ 1.21
COL6A1-206ENST00000498614 CNTLNQ9NXG0 1405 aa22.59■■□□□ 1.21
COL6A1-206ENST00000498614 DNAJC5Q9H3Z4 198 aa22.59■■□□□ 1.21
COL6A1-206ENST00000498614 HNRNPMP52272 730 aaKnown RBP eCLIP22.58■■□□□ 1.21
COL6A1-206ENST00000498614 CCDC7Q96M83 1385 aa22.58■■□□□ 1.2
COL6A1-206ENST00000498614 CDC42BPBQ9Y5S2 1711 aa22.57■■□□□ 1.2
COL6A1-206ENST00000498614 ARHGAP5Q13017 1502 aa22.56■■□□□ 1.2
COL6A1-206ENST00000498614 KIAA1107Q9UPP5 1409 aa22.56■■□□□ 1.2
COL6A1-206ENST00000498614 PKD2Q13563 968 aa22.55■■□□□ 1.2
COL6A1-206ENST00000498614 ANKRD50Q9ULJ7 1429 aa22.55■■□□□ 1.2
COL6A1-206ENST00000498614 CCDC184Q52MB2 194 aa22.54■■□□□ 1.2
COL6A1-206ENST00000498614 FANCIQ9NVI1 1328 aa22.54■■□□□ 1.2
COL6A1-206ENST00000498614 PLCH2O75038 1416 aa22.53■■□□□ 1.2
COL6A1-206ENST00000498614 PREX2Q70Z35 1606 aa22.52■■□□□ 1.2
COL6A1-206ENST00000498614 C9orf84Q5VXU9 1444 aa22.52■■□□□ 1.2
COL6A1-206ENST00000498614 SPATA31E1Q6ZUB1 1445 aa22.51■■□□□ 1.19
COL6A1-206ENST00000498614 MYO5CQ9NQX4 1742 aa22.51■■□□□ 1.19
COL6A1-206ENST00000498614 FAM69CQ0P6D2 419 aa22.51■■□□□ 1.19
COL6A1-206ENST00000498614 EFCAB2Q5VUJ9 269 aa22.49■■□□□ 1.19
COL6A1-206ENST00000498614 ZNF326Q5BKZ1 582 aaKnown RBP22.49■■□□□ 1.19
COL6A1-206ENST00000498614 SHANK2Q9UPX8 1470 aa22.49■■□□□ 1.19
COL6A1-206ENST00000498614 KIF7Q2M1P5 1343 aa22.49■■□□□ 1.19
COL6A1-206ENST00000498614 SAMD9LQ8IVG5 1584 aa22.48■■□□□ 1.19
COL6A1-206ENST00000498614 MBD5Q9P267 1494 aa22.48■■□□□ 1.19
COL6A1-206ENST00000498614 ABCA9Q8IUA7 1624 aa22.48■■□□□ 1.19
COL6A1-206ENST00000498614 CD109Q6YHK3 1445 aa22.47■■□□□ 1.19
COL6A1-206ENST00000498614 POLR1AO95602 1720 aaPredicted RBP22.47■■□□□ 1.19
COL6A1-206ENST00000498614 NUP155O75694 1391 aa22.47■■□□□ 1.19
COL6A1-206ENST00000498614 TSPY4P0CV99 314 aa22.46■■□□□ 1.19
COL6A1-206ENST00000498614 TSPY10P0CW01 314 aa22.46■■□□□ 1.19
COL6A1-206ENST00000498614 PRKRIP1Q9H875 184 aaPredicted RBP22.46■■□□□ 1.19
COL6A1-206ENST00000498614 ERICH6BQ5W0A0 696 aa22.45■■□□□ 1.18
COL6A1-206ENST00000498614 PPP4R2Q9NY27 417 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms