RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 RCAN3Q9UKA8 241 aa17.27■□□□□ 0.35
GAPVD1-220ENST00000497580 RNF123Q5XPI4 1314 aa17.26■□□□□ 0.35
GAPVD1-220ENST00000497580 DCAF11Q8TEB1 546 aa17.25■□□□□ 0.35
GAPVD1-220ENST00000497580 GLIPR1L2Q4G1C9 344 aa17.25■□□□□ 0.35
GAPVD1-220ENST00000497580 NBPF8Q3BBV2 869 aa17.25■□□□□ 0.35
GAPVD1-220ENST00000497580 IGF1RP08069 1367 aa17.25■□□□□ 0.35
GAPVD1-220ENST00000497580 PTPRKQ15262 1439 aa17.24■□□□□ 0.35
GAPVD1-220ENST00000497580 CUX1P39880 1505 aa17.24■□□□□ 0.35
GAPVD1-220ENST00000497580 NCOA2Q15596 1464 aa17.23■□□□□ 0.35
GAPVD1-220ENST00000497580 NAP1L5Q96NT1 182 aaPredicted RBP17.23■□□□□ 0.35
GAPVD1-220ENST00000497580 NCOA1Q15788 1441 aa17.22■□□□□ 0.35
GAPVD1-220ENST00000497580 MS4A1P11836 297 aa17.21■□□□□ 0.35
GAPVD1-220ENST00000497580 FAM43AQ8N2R8 423 aa17.21■□□□□ 0.35
GAPVD1-220ENST00000497580 FGD6Q6ZV73 1430 aa17.21■□□□□ 0.34
GAPVD1-220ENST00000497580 PRDM2Q13029 1718 aa17.2■□□□□ 0.34
GAPVD1-220ENST00000497580 FMN1Q68DA7 1419 aa17.2■□□□□ 0.34
GAPVD1-220ENST00000497580 RGS3P49796 1198 aa17.18■□□□□ 0.34
GAPVD1-220ENST00000497580 MPHOSPH9Q99550 1183 aa17.18■□□□□ 0.34
GAPVD1-220ENST00000497580 HFM1A2PYH4 1435 aa17.18■□□□□ 0.34
GAPVD1-220ENST00000497580 PNISRQ8TF01 805 aaKnown RBP17.18■□□□□ 0.34
GAPVD1-220ENST00000497580 CRBNQ96SW2 442 aa17.17■□□□□ 0.34
GAPVD1-220ENST00000497580 ZMYND15Q9H091 742 aa17.17■□□□□ 0.34
GAPVD1-220ENST00000497580 NAIPQ13075 1403 aa17.17■□□□□ 0.34
GAPVD1-220ENST00000497580 ARID4BQ4LE39 1312 aaPredicted RBP17.16■□□□□ 0.34
GAPVD1-220ENST00000497580 CDCA7LQ96GN5 454 aa17.16■□□□□ 0.34
GAPVD1-220ENST00000497580 KDM5BQ9UGL1 1544 aa17.16■□□□□ 0.34
GAPVD1-220ENST00000497580 PCF11O94913 1555 aaKnown RBP17.15■□□□□ 0.34
GAPVD1-220ENST00000497580 MAP3K1Q13233 1512 aa17.14■□□□□ 0.33
GAPVD1-220ENST00000497580 RRAGDQ9NQL2 400 aaPredicted RBP17.14■□□□□ 0.33
GAPVD1-220ENST00000497580 POGKQ9P215 609 aa17.14■□□□□ 0.33
GAPVD1-220ENST00000497580 SLKQ9H2G2 1235 aaPredicted RBP17.12■□□□□ 0.33
GAPVD1-220ENST00000497580 PTPN23Q9H3S7 1636 aa17.11■□□□□ 0.33
GAPVD1-220ENST00000497580 ZNF777Q9ULD5 760 aaPredicted RBP17.1■□□□□ 0.33
GAPVD1-220ENST00000497580 BIVM-ERCC5R4GMW8 1640 aa17.09■□□□□ 0.33
GAPVD1-220ENST00000497580 HSP90AA2PQ14568 343 aaPredicted RBP17.09■□□□□ 0.33
GAPVD1-220ENST00000497580 SLC4A1APQ9BWU0 796 aaKnown RBP17.08■□□□□ 0.32
GAPVD1-220ENST00000497580 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
GAPVD1-220ENST00000497580 C20orf194Q5TEA3 1177 aa17.06■□□□□ 0.32
GAPVD1-220ENST00000497580 PNNQ9H307 717 aaKnown RBP17.06■□□□□ 0.32
GAPVD1-220ENST00000497580 GZF1Q9H116 711 aaPredicted RBP17.06■□□□□ 0.32
GAPVD1-220ENST00000497580 DHX29Q7Z478 1369 aaKnown RBP17.05■□□□□ 0.32
GAPVD1-220ENST00000497580 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
GAPVD1-220ENST00000497580 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.05■□□□□ 0.32
GAPVD1-220ENST00000497580 HSP90AA1P07900 732 aaKnown RBP17.05■□□□□ 0.32
GAPVD1-220ENST00000497580 FGD5Q6ZNL6 1462 aa17.04■□□□□ 0.32
GAPVD1-220ENST00000497580 FAM161AQ3B820 660 aa17.04■□□□□ 0.32
GAPVD1-220ENST00000497580 KDM2AQ9Y2K7 1162 aa17.03■□□□□ 0.32
GAPVD1-220ENST00000497580 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.32
GAPVD1-220ENST00000497580 USP47Q96K76 1375 aa17.01■□□□□ 0.31
GAPVD1-220ENST00000497580 SPRYD3Q8NCJ5 442 aa17.01■□□□□ 0.31
GAPVD1-220ENST00000497580 CFAP43Q8NDM7 1665 aa16.98■□□□□ 0.31
GAPVD1-220ENST00000497580 CFTRP13569 1480 aa16.98■□□□□ 0.31
GAPVD1-220ENST00000497580 C8orf34Q49A92 452 aa16.97■□□□□ 0.31
GAPVD1-220ENST00000497580 L1TD1Q5T7N2 865 aaKnown RBP16.97■□□□□ 0.31
GAPVD1-220ENST00000497580 MYOM3Q5VTT5 1437 aa16.97■□□□□ 0.31
GAPVD1-220ENST00000497580 CASKIN1Q8WXD9 1431 aa16.97■□□□□ 0.31
GAPVD1-220ENST00000497580 MYBBP1AQ9BQG0 1328 aaKnown RBP16.97■□□□□ 0.31
GAPVD1-220ENST00000497580 CARD11Q9BXL7 1154 aa16.96■□□□□ 0.31
GAPVD1-220ENST00000497580 FYCO1Q9BQS8 1478 aa16.96■□□□□ 0.3
GAPVD1-220ENST00000497580 CC2D1BQ5T0F9 858 aaKnown RBP16.95■□□□□ 0.3
GAPVD1-220ENST00000497580 PANK2Q9BZ23 570 aa16.95■□□□□ 0.3
GAPVD1-220ENST00000497580 CADPSQ9ULU8 1353 aa16.95■□□□□ 0.3
GAPVD1-220ENST00000497580 KTN1Q86UP2 1357 aaKnown RBP16.95■□□□□ 0.3
GAPVD1-220ENST00000497580 DENND4BO75064 1496 aaPredicted RBP16.94■□□□□ 0.3
GAPVD1-220ENST00000497580 CENPQQ7L2Z9 268 aaPredicted RBP16.93■□□□□ 0.3
GAPVD1-220ENST00000497580 KIF15Q9NS87 1388 aa16.93■□□□□ 0.3
GAPVD1-220ENST00000497580 ZNF644Q9H582 1327 aaPredicted RBP16.93■□□□□ 0.3
GAPVD1-220ENST00000497580 SPATA31E1Q6ZUB1 1445 aa16.92■□□□□ 0.3
GAPVD1-220ENST00000497580 PLEKHG5O94827 1062 aa16.92■□□□□ 0.3
GAPVD1-220ENST00000497580 PDE3BQ13370 1112 aa16.92■□□□□ 0.3
GAPVD1-220ENST00000497580 ST20-MTHFSA0A0A6YYL1 179 aa16.91■□□□□ 0.3
GAPVD1-220ENST00000497580 GOLGA6L3A6NEY3 463 aa16.91■□□□□ 0.3
GAPVD1-220ENST00000497580 FBLN2P98095 1184 aa16.91■□□□□ 0.3
GAPVD1-220ENST00000497580 PODXL2Q9NZ53 605 aa16.91■□□□□ 0.3
GAPVD1-220ENST00000497580 BECN1Q14457 450 aa16.89■□□□□ 0.29
GAPVD1-220ENST00000497580 RALBP1Q15311 655 aa16.89■□□□□ 0.29
GAPVD1-220ENST00000497580 NLRP13Q86W25 1043 aa16.89■□□□□ 0.29
GAPVD1-220ENST00000497580 BRD4O60885 1362 aaPredicted RBP16.89■□□□□ 0.29
GAPVD1-220ENST00000497580 ANKRD30BQ9BXX2 1392 aa16.89■□□□□ 0.29
GAPVD1-220ENST00000497580 XRCC6P12956 609 aaKnown RBP eCLIP16.88■□□□□ 0.29
GAPVD1-220ENST00000497580 KDM6BO15054 1643 aa16.88■□□□□ 0.29
GAPVD1-220ENST00000497580 LRPPRCP42704 1394 aaKnown RBP16.88■□□□□ 0.29
GAPVD1-220ENST00000497580 RRP9O43818 475 aaKnown RBP16.87■□□□□ 0.29
GAPVD1-220ENST00000497580 KIF21AQ7Z4S6 1674 aa16.86■□□□□ 0.29
GAPVD1-220ENST00000497580 RPRD2Q5VT52 1461 aaKnown RBP16.85■□□□□ 0.29
GAPVD1-220ENST00000497580 KDM2BQ8NHM5 1336 aa16.85■□□□□ 0.29
GAPVD1-220ENST00000497580 SEC24BO95487 1268 aa16.84■□□□□ 0.29
GAPVD1-220ENST00000497580 TEX14Q8IWB6 1497 aa16.83■□□□□ 0.28
GAPVD1-220ENST00000497580 NESP48681 1621 aa16.83■□□□□ 0.28
GAPVD1-220ENST00000497580 ARID3AQ99856 593 aa16.82■□□□□ 0.28
GAPVD1-220ENST00000497580 FANCD2Q9BXW9 1451 aa16.82■□□□□ 0.28
GAPVD1-220ENST00000497580 RGL3Q3MIN7 710 aa16.82■□□□□ 0.28
GAPVD1-220ENST00000497580 MIA2Q96PC5 1412 aa16.82■□□□□ 0.28
GAPVD1-220ENST00000497580 A0A0U1RQG5 324 aaPredicted RBP16.82■□□□□ 0.28
GAPVD1-220ENST00000497580 CLCN1P35523 988 aa16.81■□□□□ 0.28
GAPVD1-220ENST00000497580 PKD2Q13563 968 aa16.8■□□□□ 0.28
GAPVD1-220ENST00000497580 ROCK2O75116 1388 aaKnown RBP16.8■□□□□ 0.28
GAPVD1-220ENST00000497580 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.8■□□□□ 0.28
GAPVD1-220ENST00000497580 TRIM44Q96DX7 344 aaPredicted RBP16.8■□□□□ 0.28
GAPVD1-220ENST00000497580 THOC2Q8NI27 1593 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms