RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 RIMBP3BA6NNM3 1639 aa11.26□□□□□ -0.61
HOXA9-206ENST00000497089 RIMBP3Q9UFD9 1639 aa11.26□□□□□ -0.61
HOXA9-206ENST00000497089 GAPVD1Q14C86 1478 aa11.26□□□□□ -0.61
HOXA9-206ENST00000497089 CLCN6P51797 869 aa11.26□□□□□ -0.61
HOXA9-206ENST00000497089 ARHGEF11O15085 1522 aa11.26□□□□□ -0.61
HOXA9-206ENST00000497089 SYNJ1O43426 1573 aa11.24□□□□□ -0.61
HOXA9-206ENST00000497089 PBRM1Q86U86 1689 aa11.24□□□□□ -0.61
HOXA9-206ENST00000497089 CHGAP10645 457 aaKnown RBP11.24□□□□□ -0.61
HOXA9-206ENST00000497089 MS4A3Q96HJ5 214 aa11.24□□□□□ -0.61
HOXA9-206ENST00000497089 SYNJ2O15056 1496 aa11.24□□□□□ -0.61
HOXA9-206ENST00000497089 CLASP1Q7Z460 1538 aa11.22□□□□□ -0.61
HOXA9-206ENST00000497089 PDAP1Q13442 181 aaKnown RBP11.21□□□□□ -0.61
HOXA9-206ENST00000497089 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.2□□□□□ -0.62
HOXA9-206ENST00000497089 CHMP7Q8WUX9 453 aaPredicted RBP11.2□□□□□ -0.62
HOXA9-206ENST00000497089 ZFP91Q96JP5 570 aaPredicted RBP11.2□□□□□ -0.62
HOXA9-206ENST00000497089 GALR2O43603 387 aaPredicted RBP11.19□□□□□ -0.62
HOXA9-206ENST00000497089 PAXIP1Q6ZW49 1069 aaPredicted RBP11.19□□□□□ -0.62
HOXA9-206ENST00000497089 HS6ST3Q8IZP7 471 aa11.19□□□□□ -0.62
HOXA9-206ENST00000497089 CFAP44Q96MT7 982 aa11.19□□□□□ -0.62
HOXA9-206ENST00000497089 PSEN1P49768 467 aa11.18□□□□□ -0.62
HOXA9-206ENST00000497089 STK25O00506 426 aa11.17□□□□□ -0.62
HOXA9-206ENST00000497089 ERICH3Q5RHP9 1530 aa11.16□□□□□ -0.62
HOXA9-206ENST00000497089 GABBR2O75899 941 aa11.16□□□□□ -0.62
HOXA9-206ENST00000497089 SPRYD3Q8NCJ5 442 aa11.16□□□□□ -0.62
HOXA9-206ENST00000497089 ADAMTS12P58397 1594 aa11.15□□□□□ -0.62
HOXA9-206ENST00000497089 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
HOXA9-206ENST00000497089 BCL11BQ9C0K0 894 aaPredicted RBP11.15□□□□□ -0.63
HOXA9-206ENST00000497089 TRPC6Q9Y210 931 aa11.15□□□□□ -0.63
HOXA9-206ENST00000497089 GRIN2AQ12879 1464 aa11.14□□□□□ -0.63
HOXA9-206ENST00000497089 FHAD1B1AJZ9 1412 aa11.13□□□□□ -0.63
HOXA9-206ENST00000497089 STK24Q9Y6E0 443 aa11.13□□□□□ -0.63
HOXA9-206ENST00000497089 CYB5RLQ6IPT4 315 aa11.12□□□□□ -0.63
HOXA9-206ENST00000497089 NUP160Q12769 1436 aa11.12□□□□□ -0.63
HOXA9-206ENST00000497089 TIE1P35590 1138 aa11.11□□□□□ -0.63
HOXA9-206ENST00000497089 VSIG10Q8N0Z9 540 aa11.11□□□□□ -0.63
HOXA9-206ENST00000497089 TMEM106CQ9BVX2 250 aa11.09□□□□□ -0.63
HOXA9-206ENST00000497089 CEP170Q5SW79 1584 aa11.09□□□□□ -0.63
HOXA9-206ENST00000497089 BMP2KQ9NSY1 1161 aaPredicted RBP11.08□□□□□ -0.64
HOXA9-206ENST00000497089 TTLL13PA6NNM8 815 aa11.07□□□□□ -0.64
HOXA9-206ENST00000497089 SHROOM2Q13796 1616 aa11.07□□□□□ -0.64
HOXA9-206ENST00000497089 KIF27Q86VH2 1401 aa11.05□□□□□ -0.64
HOXA9-206ENST00000497089 CABP2Q9NPB3 220 aa11.03□□□□□ -0.64
HOXA9-206ENST00000497089 IGF1RP08069 1367 aa11.03□□□□□ -0.64
HOXA9-206ENST00000497089 NKX1-1Q15270 411 aaPredicted RBP11.03□□□□□ -0.64
HOXA9-206ENST00000497089 CUL7Q14999 1698 aa11.02□□□□□ -0.65
HOXA9-206ENST00000497089 ATMINO43313 823 aaPredicted RBP11.02□□□□□ -0.65
HOXA9-206ENST00000497089 ASTLQ6HA08 431 aaPredicted RBP11.02□□□□□ -0.65
HOXA9-206ENST00000497089 ERCC6L2Q5T890 1561 aa11.01□□□□□ -0.65
HOXA9-206ENST00000497089 DCBLD2Q96PD2 775 aa11.01□□□□□ -0.65
HOXA9-206ENST00000497089 RUSC2Q8N2Y8 1516 aa11□□□□□ -0.65
HOXA9-206ENST00000497089 ATN1P54259 1190 aaPredicted RBP11□□□□□ -0.65
HOXA9-206ENST00000497089 EFCAB3Q8N7B9 438 aa11□□□□□ -0.65
HOXA9-206ENST00000497089 GOLGA2Q08379 1002 aa10.99□□□□□ -0.65
HOXA9-206ENST00000497089 PELP1Q8IZL8 1130 aaKnown RBP10.99□□□□□ -0.65
HOXA9-206ENST00000497089 TRIM35Q9UPQ4 493 aa10.99□□□□□ -0.65
HOXA9-206ENST00000497089 KIAA0586Q9BVV6 1533 aa10.96□□□□□ -0.65
HOXA9-206ENST00000497089 JPH4Q96JJ6 628 aa10.96□□□□□ -0.65
HOXA9-206ENST00000497089 TSHZ2Q9NRE2 1034 aa10.96□□□□□ -0.65
HOXA9-206ENST00000497089 PRG4Q92954 1404 aaPredicted RBP10.96□□□□□ -0.65
HOXA9-206ENST00000497089 SOX12O15370 315 aa10.95□□□□□ -0.66
HOXA9-206ENST00000497089 MKRN3Q13064 507 aaKnown RBP10.95□□□□□ -0.66
HOXA9-206ENST00000497089 CARMIL1Q5VZK9 1371 aa10.95□□□□□ -0.66
HOXA9-206ENST00000497089 MFRPQ9BY79 579 aa10.94□□□□□ -0.66
HOXA9-206ENST00000497089 GTPBP6O43824 516 aaPredicted RBP10.93□□□□□ -0.66
HOXA9-206ENST00000497089 POTEIP0CG38 1075 aa10.93□□□□□ -0.66
HOXA9-206ENST00000497089 RYDENQ9NUL5 291 aaKnown RBP10.93□□□□□ -0.66
HOXA9-206ENST00000497089 KDM2AQ9Y2K7 1162 aa10.92□□□□□ -0.66
HOXA9-206ENST00000497089 LHX8Q68G74 356 aa10.91□□□□□ -0.66
HOXA9-206ENST00000497089 BCANQ96GW7 911 aa10.91□□□□□ -0.66
HOXA9-206ENST00000497089 NLRP6P59044 892 aa10.9□□□□□ -0.66
HOXA9-206ENST00000497089 PLSCR2Q9NRY7 297 aa10.9□□□□□ -0.66
HOXA9-206ENST00000497089 PHF8Q9UPP1 1060 aa10.9□□□□□ -0.66
HOXA9-206ENST00000497089 IER5LQ5T953 404 aa10.9□□□□□ -0.67
HOXA9-206ENST00000497089 FBXO22Q8NEZ5 403 aa10.9□□□□□ -0.67
HOXA9-206ENST00000497089 ILDR1Q86SU0 546 aaPredicted RBP10.89□□□□□ -0.67
HOXA9-206ENST00000497089 RAPGEF2Q9Y4G8 1499 aa10.87□□□□□ -0.67
HOXA9-206ENST00000497089 IQGAP2Q13576 1575 aa10.86□□□□□ -0.67
HOXA9-206ENST00000497089 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.86□□□□□ -0.67
HOXA9-206ENST00000497089 IRX5P78411 483 aaPredicted RBP10.85□□□□□ -0.67
HOXA9-206ENST00000497089 SLC39A7Q92504 469 aa10.85□□□□□ -0.67
HOXA9-206ENST00000497089 MS4A4AQ96JQ5 239 aa10.85□□□□□ -0.67
HOXA9-206ENST00000497089 C7P10643 843 aa10.83□□□□□ -0.68
HOXA9-206ENST00000497089 CARMIL2Q6F5E8 1435 aa10.83□□□□□ -0.68
HOXA9-206ENST00000497089 ADCY10Q96PN6 1610 aa10.83□□□□□ -0.68
HOXA9-206ENST00000497089 MAPKBP1O60336 1514 aa10.82□□□□□ -0.68
HOXA9-206ENST00000497089 UGGT2Q9NYU1 1516 aa10.82□□□□□ -0.68
HOXA9-206ENST00000497089 OCEL1Q9H607 264 aa10.82□□□□□ -0.68
HOXA9-206ENST00000497089 PRXQ9BXM0 1461 aa10.82□□□□□ -0.68
HOXA9-206ENST00000497089 MYT1Q01538 1121 aa10.81□□□□□ -0.68
HOXA9-206ENST00000497089 PDCD7Q8N8D1 485 aaKnown RBP10.81□□□□□ -0.68
HOXA9-206ENST00000497089 METRNQ9UJH8 293 aa10.81□□□□□ -0.68
HOXA9-206ENST00000497089 PTPRGP23470 1445 aa10.81□□□□□ -0.68
HOXA9-206ENST00000497089 TNIKQ9UKE5 1360 aa10.81□□□□□ -0.68
HOXA9-206ENST00000497089 DISP1Q96F81 1524 aa10.81□□□□□ -0.68
HOXA9-206ENST00000497089 KIF13AQ9H1H9 1805 aa10.81□□□□□ -0.68
HOXA9-206ENST00000497089 CTTNBP2Q8WZ74 1663 aa10.79□□□□□ -0.68
HOXA9-206ENST00000497089 PPP1R37O75864 691 aa10.78□□□□□ -0.68
HOXA9-206ENST00000497089 SEC24BO95487 1268 aa10.78□□□□□ -0.68
HOXA9-206ENST00000497089 PLCG2P16885 1265 aa10.78□□□□□ -0.68
HOXA9-206ENST00000497089 COLQQ9Y215 455 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms