RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 AEBP2Q6ZN18 517 aaPredicted RBP22.29■■□□□ 1.16
HOXA9-206ENST00000497089 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
HOXA9-206ENST00000497089 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
HOXA9-206ENST00000497089 SENP3Q9H4L4 574 aaPredicted RBP18.91■□□□□ 0.62
HOXA9-206ENST00000497089 PLPPR3Q6T4P5 718 aa17.79■□□□□ 0.44
HOXA9-206ENST00000497089 FOXD1Q16676 465 aa17.53■□□□□ 0.4
HOXA9-206ENST00000497089 PPP6R1Q9UPN7 881 aa16.93■□□□□ 0.3
HOXA9-206ENST00000497089 ADRA2BP18089 450 aa16.91■□□□□ 0.3
HOXA9-206ENST00000497089 POTEDQ86YR6 584 aa16.63■□□□□ 0.25
HOXA9-206ENST00000497089 PIAS4Q8N2W9 510 aaPredicted RBP16.54■□□□□ 0.24
HOXA9-206ENST00000497089 MSH5O43196 834 aa16.13■□□□□ 0.17
HOXA9-206ENST00000497089 NISCHQ9Y2I1 1504 aa15.8■□□□□ 0.12
HOXA9-206ENST00000497089 PPP4R3CPQ6ZMV5 832 aa15.67■□□□□ 0.1
HOXA9-206ENST00000497089 SCAF1Q9H7N4 1312 aaKnown RBP15.48■□□□□ 0.07
HOXA9-206ENST00000497089 KCNA4P22459 653 aa15.41■□□□□ 0.06
HOXA9-206ENST00000497089 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
HOXA9-206ENST00000497089 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
HOXA9-206ENST00000497089 CNKSR2Q8WXI2 1034 aa15.23■□□□□ 0.03
HOXA9-206ENST00000497089 DMRT2Q9Y5R5 561 aa15.11■□□□□ 0.01
HOXA9-206ENST00000497089 NPM3O75607 178 aaKnown RBP15.08■□□□□ 0
HOXA9-206ENST00000497089 RNF216Q9NWF9 866 aaPredicted RBP14.91□□□□□ -0.02
HOXA9-206ENST00000497089 HOXD11P31277 338 aaPredicted RBP14.83□□□□□ -0.04
HOXA9-206ENST00000497089 SLC4A1APQ9BWU0 796 aaKnown RBP14.69□□□□□ -0.06
HOXA9-206ENST00000497089 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
HOXA9-206ENST00000497089 EHMT2Q96KQ7 1210 aa14.51□□□□□ -0.09
HOXA9-206ENST00000497089 DCAF8L1A6NGE4 600 aa14.41□□□□□ -0.1
HOXA9-206ENST00000497089 SLC4A2P04920 1241 aa14.22□□□□□ -0.13
HOXA9-206ENST00000497089 ZBTB22O15209 634 aa14.19□□□□□ -0.14
HOXA9-206ENST00000497089 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
HOXA9-206ENST00000497089 FOXD4L1Q9NU39 408 aa14.16□□□□□ -0.14
HOXA9-206ENST00000497089 CCDC180Q9P1Z9 1646 aa14.14□□□□□ -0.15
HOXA9-206ENST00000497089 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.11□□□□□ -0.15
HOXA9-206ENST00000497089 MYCNP04198 464 aaPredicted RBP13.93□□□□□ -0.18
HOXA9-206ENST00000497089 U3KPZ7 1027 aaPredicted RBP13.91□□□□□ -0.18
HOXA9-206ENST00000497089 ABCC9O60706 1549 aa13.91□□□□□ -0.18
HOXA9-206ENST00000497089 CACNB1Q02641 598 aaPredicted RBP13.84□□□□□ -0.19
HOXA9-206ENST00000497089 RNF39Q9H2S5 420 aa13.83□□□□□ -0.19
HOXA9-206ENST00000497089 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.77□□□□□ -0.21
HOXA9-206ENST00000497089 HNRNPUL2Q1KMD3 747 aaKnown RBP13.77□□□□□ -0.21
HOXA9-206ENST00000497089 SAMD1Q6SPF0 538 aaPredicted RBP13.72□□□□□ -0.21
HOXA9-206ENST00000497089 ATXN8OSP0DMR3 200 aa13.68□□□□□ -0.22
HOXA9-206ENST00000497089 C1QBPQ07021 282 aaKnown RBP13.68□□□□□ -0.22
HOXA9-206ENST00000497089 APLP2Q06481 763 aa13.59□□□□□ -0.23
HOXA9-206ENST00000497089 ATF5Q9Y2D1 282 aaPredicted RBP13.55□□□□□ -0.24
HOXA9-206ENST00000497089 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
HOXA9-206ENST00000497089 CAPN15O75808 1086 aa13.41□□□□□ -0.26
HOXA9-206ENST00000497089 ZNF219Q9P2Y4 722 aaPredicted RBP13.39□□□□□ -0.27
HOXA9-206ENST00000497089 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
HOXA9-206ENST00000497089 RB1CC1Q8TDY2 1594 aa13.36□□□□□ -0.27
HOXA9-206ENST00000497089 NACADO15069 1562 aa13.33□□□□□ -0.28
HOXA9-206ENST00000497089 MYO15BQ96JP2 1530 aa13.24□□□□□ -0.29
HOXA9-206ENST00000497089 DSG3P32926 999 aa13.2□□□□□ -0.3
HOXA9-206ENST00000497089 POLA2Q14181 598 aa13.2□□□□□ -0.3
HOXA9-206ENST00000497089 ABCB7O75027 752 aa13.17□□□□□ -0.3
HOXA9-206ENST00000497089 DCAF8L2P0C7V8 631 aa13.14□□□□□ -0.31
HOXA9-206ENST00000497089 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
HOXA9-206ENST00000497089 DCAF1Q9Y4B6 1507 aa13.11□□□□□ -0.31
HOXA9-206ENST00000497089 UNC13AQ9UPW8 1703 aa13.06□□□□□ -0.32
HOXA9-206ENST00000497089 ZBTB12Q9Y330 459 aaPredicted RBP12.99□□□□□ -0.33
HOXA9-206ENST00000497089 BICRAQ9NZM4 1560 aa12.97□□□□□ -0.33
HOXA9-206ENST00000497089 FBLN2P98095 1184 aa12.96□□□□□ -0.33
HOXA9-206ENST00000497089 MKRN4PQ13434 485 aaPredicted RBP12.96□□□□□ -0.33
HOXA9-206ENST00000497089 PABPN1Q86U42 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
HOXA9-206ENST00000497089 SHROOM4Q9ULL8 1493 aa12.87□□□□□ -0.35
HOXA9-206ENST00000497089 POTEHQ6S545 545 aa12.87□□□□□ -0.35
HOXA9-206ENST00000497089 SCRIBQ14160 1630 aa12.8□□□□□ -0.36
HOXA9-206ENST00000497089 FKBP8Q14318 412 aa12.8□□□□□ -0.36
HOXA9-206ENST00000497089 OSCARQ8IYS5 282 aa12.74□□□□□ -0.37
HOXA9-206ENST00000497089 SPDYE4A6NLX3 237 aa12.71□□□□□ -0.37
HOXA9-206ENST00000497089 SPDYE2BA6NHP3 402 aa12.64□□□□□ -0.39
HOXA9-206ENST00000497089 SPDYE6P0CI01 402 aa12.64□□□□□ -0.39
HOXA9-206ENST00000497089 SPDYE2Q495Y8 402 aa12.64□□□□□ -0.39
HOXA9-206ENST00000497089 EIF4G1Q04637 1599 aaKnown RBP12.63□□□□□ -0.39
HOXA9-206ENST00000497089 CC2D2AQ9P2K1 1620 aa12.61□□□□□ -0.39
HOXA9-206ENST00000497089 ZNF692Q9BU19 519 aaPredicted RBP12.6□□□□□ -0.39
HOXA9-206ENST00000497089 RBM42Q9BTD8 480 aaKnown RBP12.56□□□□□ -0.4
HOXA9-206ENST00000497089 SSUH2Q9Y2M2 353 aa12.56□□□□□ -0.4
HOXA9-206ENST00000497089 PROM2Q8N271 834 aa12.54□□□□□ -0.4
HOXA9-206ENST00000497089 CECR2Q9BXF3 1484 aa12.54□□□□□ -0.4
HOXA9-206ENST00000497089 AKT1S1Q96B36 256 aa12.43□□□□□ -0.42
HOXA9-206ENST00000497089 AMER1Q5JTC6 1135 aaPredicted RBP12.37□□□□□ -0.43
HOXA9-206ENST00000497089 FBXO3Q9UK99 471 aa12.33□□□□□ -0.44
HOXA9-206ENST00000497089 REM2Q8IYK8 340 aaPredicted RBP12.31□□□□□ -0.44
HOXA9-206ENST00000497089 NCAPD3P42695 1498 aa12.3□□□□□ -0.44
HOXA9-206ENST00000497089 RTN4Q9NQC3 1192 aaKnown RBP12.29□□□□□ -0.44
HOXA9-206ENST00000497089 SMARCA4P51532 1647 aa12.28□□□□□ -0.44
HOXA9-206ENST00000497089 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
HOXA9-206ENST00000497089 BAZ1AQ9NRL2 1556 aaPredicted RBP12.25□□□□□ -0.45
HOXA9-206ENST00000497089 SPDYE1Q8NFV5 336 aaPredicted RBP12.25□□□□□ -0.45
HOXA9-206ENST00000497089 STAG3Q9UJ98 1225 aa12.25□□□□□ -0.45
HOXA9-206ENST00000497089 SMARCA2P51531 1590 aa12.24□□□□□ -0.45
HOXA9-206ENST00000497089 HMGXB3Q12766 1538 aa12.23□□□□□ -0.45
HOXA9-206ENST00000497089 PEG3Q9GZU2 1588 aa12.21□□□□□ -0.45
HOXA9-206ENST00000497089 PITPNM1O00562 1244 aa12.17□□□□□ -0.46
HOXA9-206ENST00000497089 CLEC11AQ9Y240 323 aa12.17□□□□□ -0.46
HOXA9-206ENST00000497089 VASPP50552 380 aaPredicted RBP12.16□□□□□ -0.46
HOXA9-206ENST00000497089 MROH2BQ7Z745 1585 aa12.15□□□□□ -0.46
HOXA9-206ENST00000497089 BAZ1BQ9UIG0 1483 aaKnown RBP12.13□□□□□ -0.47
HOXA9-206ENST00000497089 PRR29P0C7W0 189 aa12.08□□□□□ -0.48
HOXA9-206ENST00000497089 MIER1Q8N108 512 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms