RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 FBLN2P98095 1184 aa13.64□□□□□ -0.23
NPHP3-209ENST00000493732 DDX10Q13206 875 aaKnown RBP13.63□□□□□ -0.23
NPHP3-209ENST00000493732 CCER2I3L3R5 266 aa13.62□□□□□ -0.23
NPHP3-209ENST00000493732 CFDP1Q9UEE9 299 aaPredicted RBP13.62□□□□□ -0.23
NPHP3-209ENST00000493732 ARID3CA6NKF2 412 aa13.62□□□□□ -0.23
NPHP3-209ENST00000493732 PLB1Q6P1J6 1458 aa13.61□□□□□ -0.23
NPHP3-209ENST00000493732 ANP32CO43423 234 aa13.6□□□□□ -0.23
NPHP3-209ENST00000493732 PRG4Q92954 1404 aaPredicted RBP13.6□□□□□ -0.23
NPHP3-209ENST00000493732 PLEKHD1A6NEE1 506 aa13.6□□□□□ -0.23
NPHP3-209ENST00000493732 GPATCH8Q9UKJ3 1502 aaKnown RBP13.59□□□□□ -0.23
NPHP3-209ENST00000493732 ABCA8O94911 1581 aa13.59□□□□□ -0.23
NPHP3-209ENST00000493732 CAMSAP2Q08AD1 1489 aa13.59□□□□□ -0.23
NPHP3-209ENST00000493732 KDM5BQ9UGL1 1544 aa13.58□□□□□ -0.23
NPHP3-209ENST00000493732 DENND4BO75064 1496 aaPredicted RBP13.58□□□□□ -0.24
NPHP3-209ENST00000493732 ADGRL2O95490 1459 aa13.58□□□□□ -0.24
NPHP3-209ENST00000493732 ADGBQ8N7X0 1667 aa13.58□□□□□ -0.24
NPHP3-209ENST00000493732 KDM6BO15054 1643 aa13.57□□□□□ -0.24
NPHP3-209ENST00000493732 KIF14Q15058 1648 aa13.56□□□□□ -0.24
NPHP3-209ENST00000493732 ANKRD30AQ9BXX3 1397 aa13.56□□□□□ -0.24
NPHP3-209ENST00000493732 NCOA1Q15788 1441 aa13.56□□□□□ -0.24
NPHP3-209ENST00000493732 RPRD2Q5VT52 1461 aaKnown RBP13.56□□□□□ -0.24
NPHP3-209ENST00000493732 ANKRD30BQ9BXX2 1392 aa13.55□□□□□ -0.24
NPHP3-209ENST00000493732 EIF4G2P78344 907 aaKnown RBP eCLIP13.54□□□□□ -0.24
NPHP3-209ENST00000493732 ZNF644Q9H582 1327 aaPredicted RBP13.54□□□□□ -0.24
NPHP3-209ENST00000493732 SHANK2Q9UPX8 1470 aa13.54□□□□□ -0.24
NPHP3-209ENST00000493732 SLC4A1APQ9BWU0 796 aaKnown RBP13.54□□□□□ -0.24
NPHP3-209ENST00000493732 CROCC2H7BZ55 1655 aa13.54□□□□□ -0.24
NPHP3-209ENST00000493732 ATP10BO94823 1461 aa13.53□□□□□ -0.24
NPHP3-209ENST00000493732 PTPRGP23470 1445 aa13.52□□□□□ -0.25
NPHP3-209ENST00000493732 ABCC10Q5T3U5 1492 aa13.51□□□□□ -0.25
NPHP3-209ENST00000493732 RSPH4AQ5TD94 716 aa13.51□□□□□ -0.25
NPHP3-209ENST00000493732 L3MBTL2Q969R5 705 aa13.51□□□□□ -0.25
NPHP3-209ENST00000493732 HIRIP3Q9BW71 556 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-209ENST00000493732 ZNF777Q9ULD5 760 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-209ENST00000493732 TSPY4P0CV99 314 aa13.49□□□□□ -0.25
NPHP3-209ENST00000493732 TSPY10P0CW01 314 aa13.49□□□□□ -0.25
NPHP3-209ENST00000493732 HSPA5P11021 654 aaKnown RBP13.49□□□□□ -0.25
NPHP3-209ENST00000493732 CDC42BPAQ5VT25 1732 aa13.48□□□□□ -0.25
NPHP3-209ENST00000493732 KIAA1107Q9UPP5 1409 aa13.48□□□□□ -0.25
NPHP3-209ENST00000493732 PZPP20742 1482 aa13.48□□□□□ -0.25
NPHP3-209ENST00000493732 ANKRD50Q9ULJ7 1429 aa13.48□□□□□ -0.25
NPHP3-209ENST00000493732 TEX14Q8IWB6 1497 aa13.47□□□□□ -0.25
NPHP3-209ENST00000493732 ARHGEF5Q12774 1597 aa13.47□□□□□ -0.25
NPHP3-209ENST00000493732 C9orf84Q5VXU9 1444 aa13.45□□□□□ -0.26
NPHP3-209ENST00000493732 SHROOM2Q13796 1616 aa13.44□□□□□ -0.26
NPHP3-209ENST00000493732 KCNH8Q96L42 1107 aa13.44□□□□□ -0.26
NPHP3-209ENST00000493732 FOXD1Q16676 465 aa13.43□□□□□ -0.26
NPHP3-209ENST00000493732 WASHC2AQ641Q2 1341 aa13.43□□□□□ -0.26
NPHP3-209ENST00000493732 KDM5DQ9BY66 1539 aa13.43□□□□□ -0.26
NPHP3-209ENST00000493732 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
NPHP3-209ENST00000493732 CNTLNQ9NXG0 1405 aa13.41□□□□□ -0.26
NPHP3-209ENST00000493732 CHD1O14646 1710 aa13.41□□□□□ -0.26
NPHP3-209ENST00000493732 CCDC141Q6ZP82 1450 aa13.4□□□□□ -0.26
NPHP3-209ENST00000493732 PREX2Q70Z35 1606 aa13.4□□□□□ -0.26
NPHP3-209ENST00000493732 PKD2Q13563 968 aa13.4□□□□□ -0.26
NPHP3-209ENST00000493732 PLEKHH2Q8IVE3 1493 aa13.4□□□□□ -0.26
NPHP3-209ENST00000493732 CCDC7Q96M83 1385 aa13.4□□□□□ -0.27
NPHP3-209ENST00000493732 NUP155O75694 1391 aa13.39□□□□□ -0.27
NPHP3-209ENST00000493732 SPATA31E1Q6ZUB1 1445 aa13.39□□□□□ -0.27
NPHP3-209ENST00000493732 MBD5Q9P267 1494 aa13.39□□□□□ -0.27
NPHP3-209ENST00000493732 ARID4BQ4LE39 1312 aaPredicted RBP13.38□□□□□ -0.27
NPHP3-209ENST00000493732 KIF15Q9NS87 1388 aa13.38□□□□□ -0.27
NPHP3-209ENST00000493732 NBPF8Q3BBV2 869 aa13.38□□□□□ -0.27
NPHP3-209ENST00000493732 ARHGEF12Q9NZN5 1544 aa13.38□□□□□ -0.27
NPHP3-209ENST00000493732 POLR1AO95602 1720 aaPredicted RBP13.37□□□□□ -0.27
NPHP3-209ENST00000493732 ABCC2Q92887 1545 aa13.37□□□□□ -0.27
NPHP3-209ENST00000493732 NEFLP07196 543 aa13.37□□□□□ -0.27
NPHP3-209ENST00000493732 MAST1Q9Y2H9 1570 aa13.36□□□□□ -0.27
NPHP3-209ENST00000493732 UHRF1BP1Q6BDS2 1440 aa13.36□□□□□ -0.27
NPHP3-209ENST00000493732 CDC42BPBQ9Y5S2 1711 aa13.35□□□□□ -0.27
NPHP3-209ENST00000493732 HNRNPMP52272 730 aaKnown RBP eCLIP13.35□□□□□ -0.27
NPHP3-209ENST00000493732 SAMD9LQ8IVG5 1584 aa13.35□□□□□ -0.27
NPHP3-209ENST00000493732 ARHGAP5Q13017 1502 aa13.32□□□□□ -0.28
NPHP3-209ENST00000493732 UHRF1BP1LA0JNW5 1464 aa13.32□□□□□ -0.28
NPHP3-209ENST00000493732 ROCK2O75116 1388 aaKnown RBP13.31□□□□□ -0.28
NPHP3-209ENST00000493732 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.31□□□□□ -0.28
NPHP3-209ENST00000493732 PRKRIP1Q9H875 184 aaPredicted RBP13.31□□□□□ -0.28
NPHP3-209ENST00000493732 MYO5CQ9NQX4 1742 aa13.31□□□□□ -0.28
NPHP3-209ENST00000493732 RALGAPBQ86X10 1494 aa13.31□□□□□ -0.28
NPHP3-209ENST00000493732 KIF7Q2M1P5 1343 aa13.3□□□□□ -0.28
NPHP3-209ENST00000493732 PLXNC1O60486 1568 aa13.3□□□□□ -0.28
NPHP3-209ENST00000493732 USP47Q96K76 1375 aa13.3□□□□□ -0.28
NPHP3-209ENST00000493732 FAM135AQ9P2D6 1515 aa13.28□□□□□ -0.28
NPHP3-209ENST00000493732 TTC37Q6PGP7 1564 aa13.28□□□□□ -0.28
NPHP3-209ENST00000493732 C11orf95C9JLR9 678 aaPredicted RBP13.28□□□□□ -0.28
NPHP3-209ENST00000493732 CLASP1Q7Z460 1538 aa13.28□□□□□ -0.28
NPHP3-209ENST00000493732 SYCP2Q9BX26 1530 aa13.28□□□□□ -0.28
NPHP3-209ENST00000493732 UNC13BO14795 1591 aa13.28□□□□□ -0.28
NPHP3-209ENST00000493732 EFCAB2Q5VUJ9 269 aa13.27□□□□□ -0.28
NPHP3-209ENST00000493732 PLCH2O75038 1416 aa13.27□□□□□ -0.29
NPHP3-209ENST00000493732 HNRNPUQ00839 825 aaKnown RBP eCLIP13.27□□□□□ -0.29
NPHP3-209ENST00000493732 DUOX2Q9NRD8 1548 aa13.26□□□□□ -0.29
NPHP3-209ENST00000493732 MYT1Q01538 1121 aa13.26□□□□□ -0.29
NPHP3-209ENST00000493732 FKBP8Q14318 412 aa13.26□□□□□ -0.29
NPHP3-209ENST00000493732 KDM5CP41229 1560 aa13.26□□□□□ -0.29
NPHP3-209ENST00000493732 ERBINQ96RT1 1412 aa13.26□□□□□ -0.29
NPHP3-209ENST00000493732 CCDC144AA2RUR9 1427 aa13.25□□□□□ -0.29
NPHP3-209ENST00000493732 ARAP3Q8WWN8 1544 aa13.25□□□□□ -0.29
NPHP3-209ENST00000493732 ZNF326Q5BKZ1 582 aaKnown RBP13.24□□□□□ -0.29
NPHP3-209ENST00000493732 CARD11Q9BXL7 1154 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms