RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 PTPRGP23470 1445 aa11.21□□□□□ -0.61
VPS52-219ENST00000493379 ARID4BQ4LE39 1312 aaPredicted RBP11.21□□□□□ -0.61
VPS52-219ENST00000493379 ABCB7O75027 752 aa11.21□□□□□ -0.61
VPS52-219ENST00000493379 UBAP1LF5GYI3 381 aa11.18□□□□□ -0.62
VPS52-219ENST00000493379 VASPP50552 380 aaPredicted RBP11.18□□□□□ -0.62
VPS52-219ENST00000493379 YEATS2Q9ULM3 1422 aa11.18□□□□□ -0.62
VPS52-219ENST00000493379 HSPA1LP34931 641 aa11.16□□□□□ -0.62
VPS52-219ENST00000493379 ZCCHC11Q5TAX3 1644 aaKnown RBP11.14□□□□□ -0.63
VPS52-219ENST00000493379 CD109Q6YHK3 1445 aa11.14□□□□□ -0.63
VPS52-219ENST00000493379 MAGI3Q5TCQ9 1506 aa11.14□□□□□ -0.63
VPS52-219ENST00000493379 IQSEC2Q5JU85 1478 aa11.13□□□□□ -0.63
VPS52-219ENST00000493379 UHRF1BP1LA0JNW5 1464 aa11.11□□□□□ -0.63
VPS52-219ENST00000493379 CFAP43Q8NDM7 1665 aa11.11□□□□□ -0.63
VPS52-219ENST00000493379 SRCAPQ6ZRS2 3230 aa11.11□□□□□ -0.63
VPS52-219ENST00000493379 UGGT2Q9NYU1 1516 aa11.1□□□□□ -0.63
VPS52-219ENST00000493379 KDM5BQ9UGL1 1544 aa11.1□□□□□ -0.63
VPS52-219ENST00000493379 RAPGEF3O95398 923 aa11.1□□□□□ -0.63
VPS52-219ENST00000493379 PREX1Q8TCU6 1659 aa11.09□□□□□ -0.63
VPS52-219ENST00000493379 DSG3P32926 999 aa11.09□□□□□ -0.63
VPS52-219ENST00000493379 FAM9AQ8IZU1 332 aaPredicted RBP11.09□□□□□ -0.63
VPS52-219ENST00000493379 ARAP3Q8WWN8 1544 aa11.09□□□□□ -0.63
VPS52-219ENST00000493379 UACAQ9BZF9 1416 aa11.09□□□□□ -0.63
VPS52-219ENST00000493379 IQGAP2Q13576 1575 aa11.08□□□□□ -0.64
VPS52-219ENST00000493379 TNIKQ9UKE5 1360 aa11.08□□□□□ -0.64
VPS52-219ENST00000493379 IFNLR1Q8IU57 520 aaPredicted RBP11.08□□□□□ -0.64
VPS52-219ENST00000493379 KCNH8Q96L42 1107 aa11.08□□□□□ -0.64
VPS52-219ENST00000493379 WDR7Q9Y4E6 1490 aa11.07□□□□□ -0.64
VPS52-219ENST00000493379 DISP1Q96F81 1524 aa11.07□□□□□ -0.64
VPS52-219ENST00000493379 PTPRTO14522 1441 aa11.07□□□□□ -0.64
VPS52-219ENST00000493379 CARMIL2Q6F5E8 1435 aa11.07□□□□□ -0.64
VPS52-219ENST00000493379 RGS17Q9UGC6 210 aaPredicted RBP11.06□□□□□ -0.64
VPS52-219ENST00000493379 SIGLEC1Q9BZZ2 1709 aa11.06□□□□□ -0.64
VPS52-219ENST00000493379 SETD1AO15047 1707 aaKnown RBP11.04□□□□□ -0.64
VPS52-219ENST00000493379 PIP4K2BP78356 416 aa11.04□□□□□ -0.64
VPS52-219ENST00000493379 FRMPD1Q5SYB0 1578 aa11.03□□□□□ -0.64
VPS52-219ENST00000493379 FER1L4A9Z1Z3 1794 aa11.03□□□□□ -0.64
VPS52-219ENST00000493379 CEBPAP49715 358 aaPredicted RBP11.03□□□□□ -0.64
VPS52-219ENST00000493379 MLECQ14165 292 aa11.03□□□□□ -0.64
VPS52-219ENST00000493379 GOLGA3Q08378 1498 aa11.03□□□□□ -0.64
VPS52-219ENST00000493379 TTC37Q6PGP7 1564 aa11.01□□□□□ -0.65
VPS52-219ENST00000493379 ZNF335Q9H4Z2 1342 aaPredicted RBP11.01□□□□□ -0.65
VPS52-219ENST00000493379 CTTNBP2Q8WZ74 1663 aa10.99□□□□□ -0.65
VPS52-219ENST00000493379 ZNF692Q9BU19 519 aaPredicted RBP10.99□□□□□ -0.65
VPS52-219ENST00000493379 UBTFP17480 764 aaKnown RBP10.98□□□□□ -0.65
VPS52-219ENST00000493379 ARHGEF40Q8TER5 1519 aa10.98□□□□□ -0.65
VPS52-219ENST00000493379 KIAA0556O60303 1618 aa10.98□□□□□ -0.65
VPS52-219ENST00000493379 SPDYE2BA6NHP3 402 aa10.97□□□□□ -0.65
VPS52-219ENST00000493379 SPDYE6P0CI01 402 aa10.97□□□□□ -0.65
VPS52-219ENST00000493379 SPDYE2Q495Y8 402 aa10.97□□□□□ -0.65
VPS52-219ENST00000493379 SAMD9Q5K651 1589 aa10.96□□□□□ -0.65
VPS52-219ENST00000493379 POTEAQ6S8J7 498 aa10.96□□□□□ -0.65
VPS52-219ENST00000493379 UHRF1BP1Q6BDS2 1440 aa10.95□□□□□ -0.66
VPS52-219ENST00000493379 SSUH2Q9Y2M2 353 aa10.95□□□□□ -0.66
VPS52-219ENST00000493379 EFCAB5A4FU69 1503 aa10.93□□□□□ -0.66
VPS52-219ENST00000493379 FANCAO15360 1455 aa10.93□□□□□ -0.66
VPS52-219ENST00000493379 POGZQ7Z3K3 1410 aa10.92□□□□□ -0.66
VPS52-219ENST00000493379 PKD2Q13563 968 aa10.91□□□□□ -0.66
VPS52-219ENST00000493379 ABCA8O94911 1581 aa10.9□□□□□ -0.66
VPS52-219ENST00000493379 ARHGAP35Q9NRY4 1499 aa10.9□□□□□ -0.66
VPS52-219ENST00000493379 STAG3Q9UJ98 1225 aa10.9□□□□□ -0.66
VPS52-219ENST00000493379 NCOA1Q15788 1441 aa10.9□□□□□ -0.66
VPS52-219ENST00000493379 P3H3Q8IVL6 736 aa10.89□□□□□ -0.67
VPS52-219ENST00000493379 SETD1BQ9UPS6 1966 aaKnown RBP10.88□□□□□ -0.67
VPS52-219ENST00000493379 FHOD3Q2V2M9 1422 aa10.87□□□□□ -0.67
VPS52-219ENST00000493379 LOC105371045A0A1W2PR82 267 aa10.87□□□□□ -0.67
VPS52-219ENST00000493379 UPF1Q92900 1129 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS52-219ENST00000493379 NCKAP5LQ9HCH0 1330 aa10.86□□□□□ -0.67
VPS52-219ENST00000493379 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
VPS52-219ENST00000493379 ARHGEF12Q9NZN5 1544 aa10.86□□□□□ -0.67
VPS52-219ENST00000493379 RICTORQ6R327 1708 aa10.86□□□□□ -0.67
VPS52-219ENST00000493379 ATP10BO94823 1461 aa10.86□□□□□ -0.67
VPS52-219ENST00000493379 KLHL34Q8N239 644 aa10.85□□□□□ -0.67
VPS52-219ENST00000493379 AKNAQ7Z591 1439 aa10.84□□□□□ -0.67
VPS52-219ENST00000493379 ALKQ9UM73 1620 aa10.84□□□□□ -0.67
VPS52-219ENST00000493379 TOM1O60784 492 aa10.84□□□□□ -0.67
VPS52-219ENST00000493379 SPOCK2Q92563 424 aa10.84□□□□□ -0.67
VPS52-219ENST00000493379 PHLDB1Q86UU1 1377 aa10.84□□□□□ -0.67
VPS52-219ENST00000493379 CLIP1P30622 1438 aa10.84□□□□□ -0.67
VPS52-219ENST00000493379 ARID3CA6NKF2 412 aa10.83□□□□□ -0.68
VPS52-219ENST00000493379 NUP153P49790 1475 aaKnown RBP10.82□□□□□ -0.68
VPS52-219ENST00000493379 NEO1Q92859 1461 aa10.82□□□□□ -0.68
VPS52-219ENST00000493379 RANGAP1P46060 587 aaPredicted RBP10.82□□□□□ -0.68
VPS52-219ENST00000493379 PLCB2Q00722 1185 aa10.82□□□□□ -0.68
VPS52-219ENST00000493379 CAMSAP1Q5T5Y3 1602 aa10.82□□□□□ -0.68
VPS52-219ENST00000493379 ABCA9Q8IUA7 1624 aa10.81□□□□□ -0.68
VPS52-219ENST00000493379 ZFYVE16Q7Z3T8 1539 aa10.81□□□□□ -0.68
VPS52-219ENST00000493379 PLCD3Q8N3E9 789 aa10.8□□□□□ -0.68
VPS52-219ENST00000493379 CEP162Q5TB80 1403 aa10.8□□□□□ -0.68
VPS52-219ENST00000493379 RAPGEF6Q8TEU7 1601 aa10.8□□□□□ -0.68
VPS52-219ENST00000493379 CASKIN1Q8WXD9 1431 aa10.79□□□□□ -0.68
VPS52-219ENST00000493379 CACNB1Q02641 598 aaPredicted RBP10.79□□□□□ -0.68
VPS52-219ENST00000493379 DENND4BO75064 1496 aaPredicted RBP10.79□□□□□ -0.68
VPS52-219ENST00000493379 C3P01024 1663 aa10.79□□□□□ -0.68
VPS52-219ENST00000493379 IFFO2Q5TF58 517 aa10.77□□□□□ -0.69
VPS52-219ENST00000493379 MIER1Q8N108 512 aa10.77□□□□□ -0.69
VPS52-219ENST00000493379 PLEKHD1A6NEE1 506 aa10.76□□□□□ -0.69
VPS52-219ENST00000493379 ZMYM4Q5VZL5 1548 aa10.74□□□□□ -0.69
VPS52-219ENST00000493379 HECW1Q76N89 1606 aa10.73□□□□□ -0.69
VPS52-219ENST00000493379 CDK11AQ9UQ88 783 aaPredicted RBP10.73□□□□□ -0.69
VPS52-219ENST00000493379 FYCO1Q9BQS8 1478 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms