RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 HECW1Q76N89 1606 aa20.5■□□□□ 0.87
GPNMB-214ENST00000492858 CSRNP3Q8WYN3 585 aa20.48■□□□□ 0.87
GPNMB-214ENST00000492858 ARHGEF12Q9NZN5 1544 aa20.48■□□□□ 0.87
GPNMB-214ENST00000492858 SCAPERQ9BY12 1400 aa20.47■□□□□ 0.87
GPNMB-214ENST00000492858 CEBPAP49715 358 aaPredicted RBP20.47■□□□□ 0.87
GPNMB-214ENST00000492858 DMRT2Q9Y5R5 561 aa20.47■□□□□ 0.87
GPNMB-214ENST00000492858 PREX1Q8TCU6 1659 aa20.46■□□□□ 0.87
GPNMB-214ENST00000492858 ATP10AO60312 1499 aa20.44■□□□□ 0.86
GPNMB-214ENST00000492858 C9orf84Q5VXU9 1444 aa20.44■□□□□ 0.86
GPNMB-214ENST00000492858 PLCH2O75038 1416 aa20.42■□□□□ 0.86
GPNMB-214ENST00000492858 UHRF1BP1Q6BDS2 1440 aa20.41■□□□□ 0.86
GPNMB-214ENST00000492858 SPATA31D1Q6ZQQ2 1576 aa20.41■□□□□ 0.86
GPNMB-214ENST00000492858 STRCQ7RTU9 1775 aa20.4■□□□□ 0.86
GPNMB-214ENST00000492858 CDK13Q14004 1512 aaKnown RBP20.39■□□□□ 0.85
GPNMB-214ENST00000492858 EFCAB2Q5VUJ9 269 aa20.36■□□□□ 0.85
GPNMB-214ENST00000492858 PTPRTO14522 1441 aa20.34■□□□□ 0.85
GPNMB-214ENST00000492858 ZNF518AQ6AHZ1 1483 aa20.31■□□□□ 0.84
GPNMB-214ENST00000492858 AFAP1Q8N556 730 aa20.3■□□□□ 0.84
GPNMB-214ENST00000492858 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
GPNMB-214ENST00000492858 ATP1B4Q9UN42 357 aaPredicted RBP20.28■□□□□ 0.84
GPNMB-214ENST00000492858 SETD1BQ9UPS6 1966 aaKnown RBP20.27■□□□□ 0.84
GPNMB-214ENST00000492858 MYO5CQ9NQX4 1742 aa20.27■□□□□ 0.83
GPNMB-214ENST00000492858 LTBP4Q8N2S1 1624 aa20.27■□□□□ 0.83
GPNMB-214ENST00000492858 EEA1Q15075 1411 aa20.26■□□□□ 0.83
GPNMB-214ENST00000492858 KDM5CP41229 1560 aa20.25■□□□□ 0.83
GPNMB-214ENST00000492858 ESF1Q9H501 851 aaKnown RBP20.25■□□□□ 0.83
GPNMB-214ENST00000492858 DIP2CQ9Y2E4 1556 aa20.25■□□□□ 0.83
GPNMB-214ENST00000492858 ARHGAP5Q13017 1502 aa20.24■□□□□ 0.83
GPNMB-214ENST00000492858 IQSEC2Q5JU85 1478 aa20.24■□□□□ 0.83
GPNMB-214ENST00000492858 C3P01024 1663 aa20.23■□□□□ 0.83
GPNMB-214ENST00000492858 CDK11AQ9UQ88 783 aaPredicted RBP20.23■□□□□ 0.83
GPNMB-214ENST00000492858 TRAPPC8Q9Y2L5 1435 aa20.22■□□□□ 0.83
GPNMB-214ENST00000492858 KIF14Q15058 1648 aa20.22■□□□□ 0.83
GPNMB-214ENST00000492858 REREQ9P2R6 1566 aa20.21■□□□□ 0.83
GPNMB-214ENST00000492858 NCOA1Q15788 1441 aa20.21■□□□□ 0.83
GPNMB-214ENST00000492858 ABCA6Q8N139 1617 aa20.18■□□□□ 0.82
GPNMB-214ENST00000492858 TROQ12816 1431 aaPredicted RBP20.18■□□□□ 0.82
GPNMB-214ENST00000492858 FMN1Q68DA7 1419 aa20.18■□□□□ 0.82
GPNMB-214ENST00000492858 MLH3Q9UHC1 1453 aa20.18■□□□□ 0.82
GPNMB-214ENST00000492858 AGLP35573 1532 aa20.17■□□□□ 0.82
GPNMB-214ENST00000492858 UBAP1LF5GYI3 381 aa20.15■□□□□ 0.82
GPNMB-214ENST00000492858 CLIP1P30622 1438 aa20.15■□□□□ 0.82
GPNMB-214ENST00000492858 CNTLNQ9NXG0 1405 aa20.14■□□□□ 0.81
GPNMB-214ENST00000492858 CAMSAP1Q5T5Y3 1602 aa20.13■□□□□ 0.81
GPNMB-214ENST00000492858 ZNF335Q9H4Z2 1342 aaPredicted RBP20.11■□□□□ 0.81
GPNMB-214ENST00000492858 NCKAP5LQ9HCH0 1330 aa20.1■□□□□ 0.81
GPNMB-214ENST00000492858 EHMT2Q96KQ7 1210 aa20.1■□□□□ 0.81
GPNMB-214ENST00000492858 NPATQ14207 1427 aa20.1■□□□□ 0.81
GPNMB-214ENST00000492858 ABCC1P33527 1531 aa20.09■□□□□ 0.81
GPNMB-214ENST00000492858 ARHGAP35Q9NRY4 1499 aa20.09■□□□□ 0.81
GPNMB-214ENST00000492858 UBTFP17480 764 aaKnown RBP20.08■□□□□ 0.81
GPNMB-214ENST00000492858 CDC42BPBQ9Y5S2 1711 aa20.07■□□□□ 0.8
GPNMB-214ENST00000492858 ZMYM3Q14202 1370 aa20.06■□□□□ 0.8
GPNMB-214ENST00000492858 KIDINS220Q9ULH0 1771 aa20.05■□□□□ 0.8
GPNMB-214ENST00000492858 PREX2Q70Z35 1606 aa20.04■□□□□ 0.8
GPNMB-214ENST00000492858 ITSN2Q9NZM3 1697 aa20.03■□□□□ 0.8
GPNMB-214ENST00000492858 PKD2Q13563 968 aa20.03■□□□□ 0.8
GPNMB-214ENST00000492858 MROH2AA6NES4 1674 aa20.02■□□□□ 0.8
GPNMB-214ENST00000492858 PLA2R1Q13018 1463 aa19.99■□□□□ 0.79
GPNMB-214ENST00000492858 LRRIQ1Q96JM4 1722 aa19.99■□□□□ 0.79
GPNMB-214ENST00000492858 SCAF1Q9H7N4 1312 aaKnown RBP19.98■□□□□ 0.79
GPNMB-214ENST00000492858 TCOF1Q13428 1488 aaKnown RBP19.98■□□□□ 0.79
GPNMB-214ENST00000492858 SAMD9LQ8IVG5 1584 aa19.97■□□□□ 0.79
GPNMB-214ENST00000492858 MYO3AQ8NEV4 1616 aa19.96■□□□□ 0.79
GPNMB-214ENST00000492858 HSPA1LP34931 641 aa19.96■□□□□ 0.79
GPNMB-214ENST00000492858 ZNF777Q9ULD5 760 aaPredicted RBP19.96■□□□□ 0.79
GPNMB-214ENST00000492858 PPP6R1Q9UPN7 881 aa19.96■□□□□ 0.79
GPNMB-214ENST00000492858 SPAG9O60271 1321 aaKnown RBP19.96■□□□□ 0.79
GPNMB-214ENST00000492858 CEP170BQ9Y4F5 1589 aaPredicted RBP19.95■□□□□ 0.78
GPNMB-214ENST00000492858 ZNF142P52746 1687 aaPredicted RBP19.95■□□□□ 0.78
GPNMB-214ENST00000492858 PTPRKQ15262 1439 aa19.94■□□□□ 0.78
GPNMB-214ENST00000492858 PIP4K2BP78356 416 aa19.94■□□□□ 0.78
GPNMB-214ENST00000492858 MED1Q15648 1581 aaPredicted RBP19.94■□□□□ 0.78
GPNMB-214ENST00000492858 CCDC18Q5T9S5 1454 aa19.93■□□□□ 0.78
GPNMB-214ENST00000492858 CLTCQ00610 1675 aaKnown RBP19.93■□□□□ 0.78
GPNMB-214ENST00000492858 SUPT6HQ7KZ85 1726 aaKnown RBP19.93■□□□□ 0.78
GPNMB-214ENST00000492858 SYCP2Q9BX26 1530 aa19.92■□□□□ 0.78
GPNMB-214ENST00000492858 HNRNPMP52272 730 aaKnown RBP eCLIP19.92■□□□□ 0.78
GPNMB-214ENST00000492858 CDC42BPAQ5VT25 1732 aa19.92■□□□□ 0.78
GPNMB-214ENST00000492858 GGT6Q6P531 493 aa19.91■□□□□ 0.78
GPNMB-214ENST00000492858 CASKIN1Q8WXD9 1431 aa19.9■□□□□ 0.78
GPNMB-214ENST00000492858 A2MP01023 1474 aa19.89■□□□□ 0.77
GPNMB-214ENST00000492858 PLXNC1O60486 1568 aa19.88■□□□□ 0.77
GPNMB-214ENST00000492858 ATP7AQ04656 1500 aa19.88■□□□□ 0.77
GPNMB-214ENST00000492858 TOM1O60784 492 aa19.88■□□□□ 0.77
GPNMB-214ENST00000492858 A2ML1A8K2U0 1454 aa19.86■□□□□ 0.77
GPNMB-214ENST00000492858 PHF23Q9BUL5 403 aaPredicted RBP19.85■□□□□ 0.77
GPNMB-214ENST00000492858 GPATCH8Q9UKJ3 1502 aaKnown RBP19.85■□□□□ 0.77
GPNMB-214ENST00000492858 INO80Q9ULG1 1556 aaPredicted RBP19.83■□□□□ 0.77
GPNMB-214ENST00000492858 CPS1P31327 1500 aa19.83■□□□□ 0.77
GPNMB-214ENST00000492858 KIAA1107Q9UPP5 1409 aa19.83■□□□□ 0.76
GPNMB-214ENST00000492858 SHANK2Q9UPX8 1470 aa19.82■□□□□ 0.76
GPNMB-214ENST00000492858 DNMT1P26358 1616 aaKnown RBP19.82■□□□□ 0.76
GPNMB-214ENST00000492858 CFDP1Q9UEE9 299 aaPredicted RBP19.81■□□□□ 0.76
GPNMB-214ENST00000492858 PLEKHH2Q8IVE3 1493 aa19.8■□□□□ 0.76
GPNMB-214ENST00000492858 FYCO1Q9BQS8 1478 aa19.78■□□□□ 0.76
GPNMB-214ENST00000492858 NEURL4Q96JN8 1562 aa19.78■□□□□ 0.76
GPNMB-214ENST00000492858 TNRQ92752 1358 aa19.77■□□□□ 0.76
GPNMB-214ENST00000492858 CCNB3Q8WWL7 1395 aa19.75■□□□□ 0.75
GPNMB-214ENST00000492858 FBXO31Q5XUX0 539 aaPredicted RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms