RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 PLCH2O75038 1416 aa27.24■■□□□ 1.95
USP48-210ENST00000489108 CDK13Q14004 1512 aaKnown RBP27.22■■□□□ 1.95
USP48-210ENST00000489108 CEBPAP49715 358 aaPredicted RBP27.22■■□□□ 1.95
USP48-210ENST00000489108 ATP10AO60312 1499 aa27.21■■□□□ 1.95
USP48-210ENST00000489108 EEA1Q15075 1411 aa27.19■■□□□ 1.94
USP48-210ENST00000489108 ARHGEF12Q9NZN5 1544 aa27.19■■□□□ 1.94
USP48-210ENST00000489108 EFCAB2Q5VUJ9 269 aa27.16■■□□□ 1.94
USP48-210ENST00000489108 C9orf84Q5VXU9 1444 aa27.16■■□□□ 1.94
USP48-210ENST00000489108 PREX1Q8TCU6 1659 aa27.15■■□□□ 1.94
USP48-210ENST00000489108 ATP1B4Q9UN42 357 aaPredicted RBP27.14■■□□□ 1.94
USP48-210ENST00000489108 ILDR2Q71H61 639 aa27.12■■□□□ 1.93
USP48-210ENST00000489108 DMRT2Q9Y5R5 561 aa27.12■■□□□ 1.93
USP48-210ENST00000489108 DISP3Q9P2K9 1392 aa27.1■■□□□ 1.93
USP48-210ENST00000489108 STRCQ7RTU9 1775 aa27.1■■□□□ 1.93
USP48-210ENST00000489108 AFAP1Q8N556 730 aa27.08■■□□□ 1.93
USP48-210ENST00000489108 MYO5CQ9NQX4 1742 aa27.07■■□□□ 1.92
USP48-210ENST00000489108 SETD1BQ9UPS6 1966 aaKnown RBP27.06■■□□□ 1.92
USP48-210ENST00000489108 MYT1LQ9UL68 1186 aa27.05■■□□□ 1.92
USP48-210ENST00000489108 CDK11AQ9UQ88 783 aaPredicted RBP27.04■■□□□ 1.92
USP48-210ENST00000489108 UHRF1BP1Q6BDS2 1440 aa27.04■■□□□ 1.92
USP48-210ENST00000489108 ZNF518AQ6AHZ1 1483 aa27.02■■□□□ 1.92
USP48-210ENST00000489108 EHMT2Q96KQ7 1210 aa27.02■■□□□ 1.92
USP48-210ENST00000489108 KIF14Q15058 1648 aa27.01■■□□□ 1.92
USP48-210ENST00000489108 SOCS7O14512 581 aa27.01■■□□□ 1.91
USP48-210ENST00000489108 FMN1Q68DA7 1419 aa26.99■■□□□ 1.91
USP48-210ENST00000489108 ARHGAP5Q13017 1502 aa26.98■■□□□ 1.91
USP48-210ENST00000489108 KDM5CP41229 1560 aa26.97■■□□□ 1.91
USP48-210ENST00000489108 UBTFP17480 764 aaKnown RBP26.97■■□□□ 1.91
USP48-210ENST00000489108 DIP2CQ9Y2E4 1556 aa26.94■■□□□ 1.9
USP48-210ENST00000489108 TROQ12816 1431 aaPredicted RBP26.94■■□□□ 1.9
USP48-210ENST00000489108 PTPRTO14522 1441 aa26.93■■□□□ 1.9
USP48-210ENST00000489108 C3P01024 1663 aa26.92■■□□□ 1.9
USP48-210ENST00000489108 ARHGAP35Q9NRY4 1499 aa26.92■■□□□ 1.9
USP48-210ENST00000489108 ESF1Q9H501 851 aaKnown RBP26.91■■□□□ 1.9
USP48-210ENST00000489108 REREQ9P2R6 1566 aa26.9■■□□□ 1.9
USP48-210ENST00000489108 ABCA6Q8N139 1617 aa26.89■■□□□ 1.9
USP48-210ENST00000489108 MLH3Q9UHC1 1453 aa26.88■■□□□ 1.89
USP48-210ENST00000489108 CLIP1P30622 1438 aa26.88■■□□□ 1.89
USP48-210ENST00000489108 CDC42BPBQ9Y5S2 1711 aa26.87■■□□□ 1.89
USP48-210ENST00000489108 TRAPPC8Q9Y2L5 1435 aa26.86■■□□□ 1.89
USP48-210ENST00000489108 LTBP4Q8N2S1 1624 aa26.85■■□□□ 1.89
USP48-210ENST00000489108 LRRIQ1Q96JM4 1722 aa26.84■■□□□ 1.89
USP48-210ENST00000489108 AGLP35573 1532 aa26.84■■□□□ 1.89
USP48-210ENST00000489108 SPATA31D1Q6ZQQ2 1576 aa26.83■■□□□ 1.89
USP48-210ENST00000489108 NCOA1Q15788 1441 aa26.79■■□□□ 1.88
USP48-210ENST00000489108 ABCC1P33527 1531 aa26.78■■□□□ 1.88
USP48-210ENST00000489108 KIDINS220Q9ULH0 1771 aa26.76■■□□□ 1.88
USP48-210ENST00000489108 ITSN2Q9NZM3 1697 aa26.76■■□□□ 1.87
USP48-210ENST00000489108 PREX2Q70Z35 1606 aa26.76■■□□□ 1.87
USP48-210ENST00000489108 CNTLNQ9NXG0 1405 aa26.75■■□□□ 1.87
USP48-210ENST00000489108 IQSEC2Q5JU85 1478 aa26.74■■□□□ 1.87
USP48-210ENST00000489108 CAMSAP1Q5T5Y3 1602 aa26.72■■□□□ 1.87
USP48-210ENST00000489108 NCKAP5LQ9HCH0 1330 aa26.71■■□□□ 1.87
USP48-210ENST00000489108 ZMYM3Q14202 1370 aa26.7■■□□□ 1.86
USP48-210ENST00000489108 NPATQ14207 1427 aa26.68■■□□□ 1.86
USP48-210ENST00000489108 ZNF777Q9ULD5 760 aaPredicted RBP26.68■■□□□ 1.86
USP48-210ENST00000489108 CDC42BPAQ5VT25 1732 aa26.68■■□□□ 1.86
USP48-210ENST00000489108 ZNF335Q9H4Z2 1342 aaPredicted RBP26.66■■□□□ 1.86
USP48-210ENST00000489108 UBAP1LF5GYI3 381 aa26.65■■□□□ 1.86
USP48-210ENST00000489108 MROH2AA6NES4 1674 aa26.65■■□□□ 1.86
USP48-210ENST00000489108 CASKIN1Q8WXD9 1431 aa26.65■■□□□ 1.86
USP48-210ENST00000489108 SAMD9LQ8IVG5 1584 aa26.64■■□□□ 1.86
USP48-210ENST00000489108 CCDC18Q5T9S5 1454 aa26.64■■□□□ 1.86
USP48-210ENST00000489108 HNRNPMP52272 730 aaKnown RBP eCLIP26.63■■□□□ 1.853e-7■■■■□ 25
USP48-210ENST00000489108 SPAG9O60271 1321 aaKnown RBP26.63■■□□□ 1.85
USP48-210ENST00000489108 SUPT6HQ7KZ85 1726 aaKnown RBP26.62■■□□□ 1.85
USP48-210ENST00000489108 PKD2Q13563 968 aa26.58■■□□□ 1.85
USP48-210ENST00000489108 SYCP2Q9BX26 1530 aa26.57■■□□□ 1.84
USP48-210ENST00000489108 CLTCQ00610 1675 aaKnown RBP26.57■■□□□ 1.84
USP48-210ENST00000489108 GGT6Q6P531 493 aa26.55■■□□□ 1.84
USP48-210ENST00000489108 GPATCH8Q9UKJ3 1502 aaKnown RBP26.55■■□□□ 1.84
USP48-210ENST00000489108 PTPRKQ15262 1439 aa26.53■■□□□ 1.84
USP48-210ENST00000489108 PLA2R1Q13018 1463 aa26.52■■□□□ 1.84
USP48-210ENST00000489108 MYO3AQ8NEV4 1616 aa26.52■■□□□ 1.84
USP48-210ENST00000489108 ZNF142P52746 1687 aaPredicted RBP26.51■■□□□ 1.83
USP48-210ENST00000489108 ATP7AQ04656 1500 aa26.51■■□□□ 1.83
USP48-210ENST00000489108 A2MP01023 1474 aa26.5■■□□□ 1.83
USP48-210ENST00000489108 TCOF1Q13428 1488 aaKnown RBP26.5■■□□□ 1.83
USP48-210ENST00000489108 CHIC1Q5VXU3 224 aa26.5■■□□□ 1.83
USP48-210ENST00000489108 CEP170BQ9Y4F5 1589 aaPredicted RBP26.5■■□□□ 1.83
USP48-210ENST00000489108 CFDP1Q9UEE9 299 aaPredicted RBP26.49■■□□□ 1.83
USP48-210ENST00000489108 PPP6R1Q9UPN7 881 aa26.48■■□□□ 1.83
USP48-210ENST00000489108 PLXNC1O60486 1568 aa26.48■■□□□ 1.83
USP48-210ENST00000489108 KIAA1107Q9UPP5 1409 aa26.48■■□□□ 1.83
USP48-210ENST00000489108 FYCO1Q9BQS8 1478 aa26.47■■□□□ 1.83
USP48-210ENST00000489108 INO80Q9ULG1 1556 aaPredicted RBP26.46■■□□□ 1.83
USP48-210ENST00000489108 PLEKHH2Q8IVE3 1493 aa26.43■■□□□ 1.82
USP48-210ENST00000489108 HSPA1LP34931 641 aa26.41■■□□□ 1.82
USP48-210ENST00000489108 CCNB3Q8WWL7 1395 aa26.41■■□□□ 1.82
USP48-210ENST00000489108 SCAF1Q9H7N4 1312 aaKnown RBP26.4■■□□□ 1.82
USP48-210ENST00000489108 PIP4K2BP78356 416 aa26.39■■□□□ 1.82
USP48-210ENST00000489108 A2ML1A8K2U0 1454 aa26.38■■□□□ 1.81
USP48-210ENST00000489108 DNMT1P26358 1616 aaKnown RBP26.38■■□□□ 1.81
USP48-210ENST00000489108 ZNF644Q9H582 1327 aaPredicted RBP26.38■■□□□ 1.81
USP48-210ENST00000489108 ADGBQ8N7X0 1667 aa26.36■■□□□ 1.81
USP48-210ENST00000489108 TOM1O60784 492 aa26.34■■□□□ 1.81
USP48-210ENST00000489108 FBXO31Q5XUX0 539 aaPredicted RBP26.34■■□□□ 1.81
USP48-210ENST00000489108 MTUS2Q5JR59 1369 aa26.31■■□□□ 1.8
USP48-210ENST00000489108 MED1Q15648 1581 aaPredicted RBP26.3■■□□□ 1.8
USP48-210ENST00000489108 DHX29Q7Z478 1369 aaKnown RBP26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms