RNA–Protein interactions for RNA: ENST00000488337.5

SIK3-212, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 4,220 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-212ENST00000488337 HMGXB3Q12766 1538 aa8.41□□□□□ -1.06
SIK3-212ENST00000488337 BAZ1BQ9UIG0 1483 aaKnown RBP8.4□□□□□ -1.06
SIK3-212ENST00000488337 TPM2P07951 284 aa8.4□□□□□ -1.06
SIK3-212ENST00000488337 CNGB1Q14028 1251 aaPredicted RBP8.4□□□□□ -1.06
SIK3-212ENST00000488337 PNNQ9H307 717 aaKnown RBP8.4□□□□□ -1.06
SIK3-212ENST00000488337 ARID4BQ4LE39 1312 aaPredicted RBP8.39□□□□□ -1.07
SIK3-212ENST00000488337 TULP1O00294 542 aaPredicted RBP8.38□□□□□ -1.07
SIK3-212ENST00000488337 DMTNQ08495 405 aa8.38□□□□□ -1.07
SIK3-212ENST00000488337 DDX10Q13206 875 aaKnown RBP8.37□□□□□ -1.07
SIK3-212ENST00000488337 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.37□□□□□ -1.07
SIK3-212ENST00000488337 MMP14P50281 582 aa8.37□□□□□ -1.07
SIK3-212ENST00000488337 RGS22Q8NE09 1264 aa8.37□□□□□ -1.07
SIK3-212ENST00000488337 NPM2Q86SE8 214 aaKnown RBP8.36□□□□□ -1.07
SIK3-212ENST00000488337 KANK4Q5T7N3 995 aaPredicted RBP8.36□□□□□ -1.07
SIK3-212ENST00000488337 MAPKBP1O60336 1514 aa8.35□□□□□ -1.07
SIK3-212ENST00000488337 RAPGEF2Q9Y4G8 1499 aa8.35□□□□□ -1.07
SIK3-212ENST00000488337 FAM50AQ14320 339 aaKnown RBP8.34□□□□□ -1.07
SIK3-212ENST00000488337 KCNG1Q9UIX4 513 aa8.34□□□□□ -1.07
SIK3-212ENST00000488337 WDR97A6NE52 1622 aa8.34□□□□□ -1.07
SIK3-212ENST00000488337 NPM3O75607 178 aaKnown RBP8.34□□□□□ -1.07
SIK3-212ENST00000488337 ANP32CO43423 234 aa8.34□□□□□ -1.07
SIK3-212ENST00000488337 ZSCAN20P17040 1043 aaPredicted RBP8.34□□□□□ -1.07
SIK3-212ENST00000488337 NCLP19338 710 aaKnown RBP8.33□□□□□ -1.08
SIK3-212ENST00000488337 PPP4R3BQ5MIZ7 849 aa8.33□□□□□ -1.08
SIK3-212ENST00000488337 BACH2Q9BYV9 841 aa8.33□□□□□ -1.08
SIK3-212ENST00000488337 FSD2A1L4K1 749 aa8.33□□□□□ -1.08
SIK3-212ENST00000488337 RIPK4P57078 832 aa8.33□□□□□ -1.08
SIK3-212ENST00000488337 TERF1P54274 439 aa8.33□□□□□ -1.08
SIK3-212ENST00000488337 MAP7D2Q96T17 732 aa8.32□□□□□ -1.08
SIK3-212ENST00000488337 CCNB3Q8WWL7 1395 aa8.31□□□□□ -1.08
SIK3-212ENST00000488337 CC2D2AQ9P2K1 1620 aa8.31□□□□□ -1.08
SIK3-212ENST00000488337 ZHX1Q9UKY1 873 aaPredicted RBP8.31□□□□□ -1.08
SIK3-212ENST00000488337 ERBB4Q15303 1308 aa8.31□□□□□ -1.08
SIK3-212ENST00000488337 SLC20A2Q08357 652 aa8.3□□□□□ -1.08
SIK3-212ENST00000488337 KIF20AO95235 890 aa8.29□□□□□ -1.08
SIK3-212ENST00000488337 PLCD3Q8N3E9 789 aa8.29□□□□□ -1.08
SIK3-212ENST00000488337 KIF21BO75037 1637 aa8.29□□□□□ -1.08
SIK3-212ENST00000488337 FRAT2O75474 233 aaPredicted RBP8.29□□□□□ -1.08
SIK3-212ENST00000488337 MS4A1P11836 297 aa8.29□□□□□ -1.08
SIK3-212ENST00000488337 L1TD1Q5T7N2 865 aaKnown RBP8.29□□□□□ -1.08
SIK3-212ENST00000488337 PSEN1P49768 467 aa8.28□□□□□ -1.08
SIK3-212ENST00000488337 HAP1P54257 671 aaPredicted RBP8.28□□□□□ -1.08
SIK3-212ENST00000488337 HIRIP3Q9BW71 556 aaPredicted RBP8.28□□□□□ -1.08
SIK3-212ENST00000488337 VIRMAQ69YN4 1812 aaKnown RBP8.28□□□□□ -1.08
SIK3-212ENST00000488337 HSP90B1P14625 803 aaKnown RBP8.28□□□□□ -1.08
SIK3-212ENST00000488337 PDE4AP27815 886 aa8.28□□□□□ -1.08
SIK3-212ENST00000488337 XRCC6P12956 609 aaKnown RBP eCLIP8.28□□□□□ -1.08
SIK3-212ENST00000488337 SMG6Q86US8 1419 aaKnown RBP8.28□□□□□ -1.08
SIK3-212ENST00000488337 TCERG1O14776 1098 aaKnown RBP8.27□□□□□ -1.08
SIK3-212ENST00000488337 SLC52A1Q9NWF4 448 aa8.27□□□□□ -1.09
SIK3-212ENST00000488337 VGLL3A8MV65 326 aa8.27□□□□□ -1.09
SIK3-212ENST00000488337 SIN3AQ96ST3 1273 aa8.27□□□□□ -1.09
SIK3-212ENST00000488337 ZBED9Q6R2W3 1325 aa8.26□□□□□ -1.09
SIK3-212ENST00000488337 SYNJ1O43426 1573 aa8.26□□□□□ -1.09
SIK3-212ENST00000488337 RAB3GAP2Q9H2M9 1393 aa8.25□□□□□ -1.09
SIK3-212ENST00000488337 POGKQ9P215 609 aa8.25□□□□□ -1.09
SIK3-212ENST00000488337 HNRNPUQ00839 825 aaKnown RBP eCLIP8.25□□□□□ -1.09
SIK3-212ENST00000488337 KIF27Q86VH2 1401 aa8.25□□□□□ -1.09
SIK3-212ENST00000488337 CNPY4Q8N129 248 aa8.24□□□□□ -1.09
SIK3-212ENST00000488337 ERCC6Q03468 1493 aa8.24□□□□□ -1.09
SIK3-212ENST00000488337 GTPBP4Q9BZE4 634 aaKnown RBP8.24□□□□□ -1.09
SIK3-212ENST00000488337 FBXO3Q9UK99 471 aa8.24□□□□□ -1.09
SIK3-212ENST00000488337 ESPNB1AK53 854 aa8.24□□□□□ -1.09
SIK3-212ENST00000488337 NPM1P06748 294 aaKnown RBP eCLIP8.24□□□□□ -1.09
SIK3-212ENST00000488337 GRIPAP1Q4V328 841 aa8.24□□□□□ -1.09
SIK3-212ENST00000488337 P3H3Q8IVL6 736 aa8.24□□□□□ -1.09
SIK3-212ENST00000488337 LETM1O95202 739 aaPredicted RBP8.22□□□□□ -1.09
SIK3-212ENST00000488337 MTERF4Q7Z6M4 381 aaKnown RBP8.22□□□□□ -1.09
SIK3-212ENST00000488337 AKNAQ7Z591 1439 aa8.22□□□□□ -1.09
SIK3-212ENST00000488337 RRBP1Q9P2E9 1410 aaKnown RBP8.22□□□□□ -1.09
SIK3-212ENST00000488337 TONSLQ96HA7 1378 aa8.22□□□□□ -1.09
SIK3-212ENST00000488337 SOX12O15370 315 aa8.21□□□□□ -1.09
SIK3-212ENST00000488337 IRX3P78415 501 aaPredicted RBP8.21□□□□□ -1.09
SIK3-212ENST00000488337 TAF3Q5VWG9 929 aa8.21□□□□□ -1.09
SIK3-212ENST00000488337 SETD5Q9C0A6 1442 aa8.21□□□□□ -1.09
SIK3-212ENST00000488337 KIAA1211Q6ZU35 1233 aa8.21□□□□□ -1.1
SIK3-212ENST00000488337 C14orf37Q86TY3 774 aa8.21□□□□□ -1.1
SIK3-212ENST00000488337 OFD1O75665 1012 aa8.2□□□□□ -1.1
SIK3-212ENST00000488337 PANK2Q9BZ23 570 aa8.2□□□□□ -1.1
SIK3-212ENST00000488337 PHLDB1Q86UU1 1377 aa8.2□□□□□ -1.1
SIK3-212ENST00000488337 NCOA2Q15596 1464 aa8.19□□□□□ -1.1
SIK3-212ENST00000488337 ARAP1Q96P48 1450 aa8.19□□□□□ -1.1
SIK3-212ENST00000488337 PRDM2Q13029 1718 aa8.19□□□□□ -1.1
SIK3-212ENST00000488337 CCDC94Q9BW85 323 aaPredicted RBP8.19□□□□□ -1.1
SIK3-212ENST00000488337 PRXQ9BXM0 1461 aa8.18□□□□□ -1.1
SIK3-212ENST00000488337 CFTRP13569 1480 aa8.18□□□□□ -1.1
SIK3-212ENST00000488337 PRDM10Q9NQV6 1147 aa8.17□□□□□ -1.1
SIK3-212ENST00000488337 CLGNO14967 610 aa8.17□□□□□ -1.1
SIK3-212ENST00000488337 YY1AP1Q9H869 796 aa8.17□□□□□ -1.1
SIK3-212ENST00000488337 ERICH3Q5RHP9 1530 aa8.16□□□□□ -1.1
SIK3-212ENST00000488337 IRX5P78411 483 aaPredicted RBP8.16□□□□□ -1.1
SIK3-212ENST00000488337 AMER1Q5JTC6 1135 aaPredicted RBP8.16□□□□□ -1.1
SIK3-212ENST00000488337 CHMP7Q8WUX9 453 aaPredicted RBP8.16□□□□□ -1.1
SIK3-212ENST00000488337 ANP32BQ92688 251 aaKnown RBP8.16□□□□□ -1.1
SIK3-212ENST00000488337 CADPSQ9ULU8 1353 aa8.16□□□□□ -1.1
SIK3-212ENST00000488337 ABCA5Q8WWZ7 1642 aa8.15□□□□□ -1.11
SIK3-212ENST00000488337 HDAC5Q9UQL6 1122 aa8.14□□□□□ -1.11
SIK3-212ENST00000488337 GOLGA6L3A6NEY3 463 aa8.14□□□□□ -1.11
SIK3-212ENST00000488337 GEMIN8Q9NWZ8 242 aaKnown RBP8.14□□□□□ -1.11
SIK3-212ENST00000488337 MYOM3Q5VTT5 1437 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms