RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 TRIM52Q96A61 297 aa37.07■■■■□ 3.53
HLA-C-208ENST00000487245 KDM6BO15054 1643 aa37.05■■■■□ 3.52
HLA-C-208ENST00000487245 ABCA8O94911 1581 aa37.03■■■■□ 3.52
HLA-C-208ENST00000487245 KDM5BQ9UGL1 1544 aa37.01■■■■□ 3.52
HLA-C-208ENST00000487245 DENND4BO75064 1496 aaPredicted RBP37■■■■□ 3.51
HLA-C-208ENST00000487245 MPHOSPH9Q99550 1183 aa36.99■■■■□ 3.51
HLA-C-208ENST00000487245 DDX10Q13206 875 aaKnown RBP36.99■■■■□ 3.51
HLA-C-208ENST00000487245 GPATCH8Q9UKJ3 1502 aaKnown RBP36.98■■■■□ 3.51
HLA-C-208ENST00000487245 CFDP1Q9UEE9 299 aaPredicted RBP36.97■■■■□ 3.51
HLA-C-208ENST00000487245 CAMSAP2Q08AD1 1489 aa36.96■■■■□ 3.51
HLA-C-208ENST00000487245 ZNF644Q9H582 1327 aaPredicted RBP36.95■■■■□ 3.51
HLA-C-208ENST00000487245 KIF14Q15058 1648 aa36.92■■■■□ 3.5
HLA-C-208ENST00000487245 PLEKHD1A6NEE1 506 aa36.91■■■■□ 3.5
HLA-C-208ENST00000487245 CCER2I3L3R5 266 aa36.89■■■■□ 3.5
HLA-C-208ENST00000487245 ADGBQ8N7X0 1667 aa36.89■■■■□ 3.5
HLA-C-208ENST00000487245 ATP10BO94823 1461 aa36.87■■■■□ 3.49
HLA-C-208ENST00000487245 SUPT16HQ9Y5B9 1047 aaKnown RBP36.85■■■■□ 3.49
HLA-C-208ENST00000487245 ADGRL2O95490 1459 aa36.85■■■■□ 3.49
HLA-C-208ENST00000487245 KCNH8Q96L42 1107 aa36.84■■■■□ 3.49
HLA-C-208ENST00000487245 CROCC2H7BZ55 1655 aa36.82■■■■□ 3.48
HLA-C-208ENST00000487245 NCOA1Q15788 1441 aa36.8■■■■□ 3.48
HLA-C-208ENST00000487245 ABCC10Q5T3U5 1492 aa36.8■■■■□ 3.48
HLA-C-208ENST00000487245 PTPRGP23470 1445 aa36.79■■■■□ 3.48
HLA-C-208ENST00000487245 ANKRD30BQ9BXX2 1392 aa36.78■■■■□ 3.48
HLA-C-208ENST00000487245 CDC42BPAQ5VT25 1732 aa36.75■■■■□ 3.47
HLA-C-208ENST00000487245 ANP32CO43423 234 aa36.74■■■■□ 3.47
HLA-C-208ENST00000487245 ANKRD30AQ9BXX3 1397 aa36.74■■■■□ 3.47
HLA-C-208ENST00000487245 HIRIP3Q9BW71 556 aaPredicted RBP36.73■■■■□ 3.47
HLA-C-208ENST00000487245 CHD1O14646 1710 aa36.72■■■■□ 3.47
HLA-C-208ENST00000487245 ZNF777Q9ULD5 760 aaPredicted RBP36.72■■■■□ 3.47
HLA-C-208ENST00000487245 RPRD2Q5VT52 1461 aaKnown RBP36.72■■■■□ 3.47
HLA-C-208ENST00000487245 SLC4A1APQ9BWU0 796 aaKnown RBP36.71■■■■□ 3.47
HLA-C-208ENST00000487245 SHANK2Q9UPX8 1470 aa36.7■■■■□ 3.46
HLA-C-208ENST00000487245 SHROOM2Q13796 1616 aa36.66■■■■□ 3.46
HLA-C-208ENST00000487245 L3MBTL2Q969R5 705 aa36.65■■■■□ 3.46
HLA-C-208ENST00000487245 PZPP20742 1482 aa36.64■■■■□ 3.46
HLA-C-208ENST00000487245 FOXD1Q16676 465 aa36.62■■■■□ 3.45
HLA-C-208ENST00000487245 EIF4G2P78344 907 aaKnown RBP eCLIP36.58■■■■□ 3.45
HLA-C-208ENST00000487245 ARHGEF5Q12774 1597 aa36.57■■■■□ 3.44
HLA-C-208ENST00000487245 HSPA5P11021 654 aaKnown RBP36.56■■■■□ 3.44
HLA-C-208ENST00000487245 TEX14Q8IWB6 1497 aa36.56■■■■□ 3.44
HLA-C-208ENST00000487245 C9orf84Q5VXU9 1444 aa36.55■■■■□ 3.44
HLA-C-208ENST00000487245 ANKRD50Q9ULJ7 1429 aa36.55■■■■□ 3.44
HLA-C-208ENST00000487245 KIAA1107Q9UPP5 1409 aa36.54■■■■□ 3.44
HLA-C-208ENST00000487245 TSPY4P0CV99 314 aa36.53■■■■□ 3.44
HLA-C-208ENST00000487245 TSPY10P0CW01 314 aa36.53■■■■□ 3.44
HLA-C-208ENST00000487245 RSPH4AQ5TD94 716 aa36.49■■■■□ 3.43
HLA-C-208ENST00000487245 PREX2Q70Z35 1606 aa36.47■■■■□ 3.43
HLA-C-208ENST00000487245 MBD5Q9P267 1494 aa36.43■■■■□ 3.42
HLA-C-208ENST00000487245 KDM5DQ9BY66 1539 aa36.43■■■■□ 3.42
HLA-C-208ENST00000487245 WASHC2AQ641Q2 1341 aa36.41■■■■□ 3.42
HLA-C-208ENST00000487245 CDC42BPBQ9Y5S2 1711 aa36.41■■■■□ 3.42
HLA-C-208ENST00000487245 ABCC2Q92887 1545 aa36.41■■■■□ 3.42
HLA-C-208ENST00000487245 CCDC141Q6ZP82 1450 aa36.4■■■■□ 3.42
HLA-C-208ENST00000487245 PKD2Q13563 968 aa36.39■■■■□ 3.42
HLA-C-208ENST00000487245 SAMD9LQ8IVG5 1584 aa36.38■■■■□ 3.41
HLA-C-208ENST00000487245 NBPF8Q3BBV2 869 aa36.38■■■■□ 3.41
HLA-C-208ENST00000487245 POLR1AO95602 1720 aaPredicted RBP36.37■■■■□ 3.41
HLA-C-208ENST00000487245 HNRNPMP52272 730 aaKnown RBP eCLIP36.36■■■■□ 3.41
HLA-C-208ENST00000487245 KIF15Q9NS87 1388 aa36.35■■■■□ 3.41
HLA-C-208ENST00000487245 NUP155O75694 1391 aa36.34■■■■□ 3.41
HLA-C-208ENST00000487245 CNTLNQ9NXG0 1405 aa36.34■■■■□ 3.41
HLA-C-208ENST00000487245 CLASP1Q7Z460 1538 aa36.28■■■■□ 3.4
HLA-C-208ENST00000487245 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.28■■■■□ 3.4
HLA-C-208ENST00000487245 ERCC6L2Q5T890 1561 aa36.28■■■■□ 3.4
HLA-C-208ENST00000487245 MAST1Q9Y2H9 1570 aa36.28■■■■□ 3.4
HLA-C-208ENST00000487245 SPATA31E1Q6ZUB1 1445 aa36.27■■■■□ 3.4
HLA-C-208ENST00000487245 PLEKHH2Q8IVE3 1493 aa36.27■■■■□ 3.4
HLA-C-208ENST00000487245 MYT1Q01538 1121 aa36.26■■■■□ 3.4
HLA-C-208ENST00000487245 CCDC7Q96M83 1385 aa36.26■■■■□ 3.4
HLA-C-208ENST00000487245 UHRF1BP1LA0JNW5 1464 aa36.24■■■■□ 3.39
HLA-C-208ENST00000487245 ARHGAP5Q13017 1502 aa36.24■■■■□ 3.39
HLA-C-208ENST00000487245 TTC37Q6PGP7 1564 aa36.24■■■■□ 3.39
HLA-C-208ENST00000487245 MYO5CQ9NQX4 1742 aa36.22■■■■□ 3.39
HLA-C-208ENST00000487245 FKBP8Q14318 412 aa36.21■■■■□ 3.39
HLA-C-208ENST00000487245 NEFLP07196 543 aa36.18■■■■□ 3.38
HLA-C-208ENST00000487245 SYCP2Q9BX26 1530 aa36.18■■■■□ 3.38
HLA-C-208ENST00000487245 ARHGEF12Q9NZN5 1544 aa36.18■■■■□ 3.38
HLA-C-208ENST00000487245 UHRF1BP1Q6BDS2 1440 aa36.17■■■■□ 3.38
HLA-C-208ENST00000487245 TSHZ2Q9NRE2 1034 aa36.15■■■■□ 3.38
HLA-C-208ENST00000487245 C11orf95C9JLR9 678 aaPredicted RBP36.13■■■■□ 3.37
HLA-C-208ENST00000487245 ZCCHC11Q5TAX3 1644 aaKnown RBP36.12■■■■□ 3.37
HLA-C-208ENST00000487245 PLXNC1O60486 1568 aa36.11■■■■□ 3.37
HLA-C-208ENST00000487245 FAM135AQ9P2D6 1515 aa36.09■■■■□ 3.37
HLA-C-208ENST00000487245 PLCH2O75038 1416 aa36.08■■■■□ 3.37
HLA-C-208ENST00000487245 UNC13BO14795 1591 aa36.07■■■■□ 3.36
HLA-C-208ENST00000487245 KIF7Q2M1P5 1343 aa36.06■■■■□ 3.36
HLA-C-208ENST00000487245 RALGAPBQ86X10 1494 aa36.05■■■■□ 3.36
HLA-C-208ENST00000487245 ARID4BQ4LE39 1312 aaPredicted RBP36.03■■■■□ 3.36
HLA-C-208ENST00000487245 USP47Q96K76 1375 aa36.02■■■■□ 3.36
HLA-C-208ENST00000487245 EFCAB2Q5VUJ9 269 aa36.02■■■■□ 3.36
HLA-C-208ENST00000487245 PRKRIP1Q9H875 184 aaPredicted RBP36.02■■■■□ 3.36
HLA-C-208ENST00000487245 DUOX2Q9NRD8 1548 aa35.99■■■■□ 3.35
HLA-C-208ENST00000487245 HNRNPUQ00839 825 aaKnown RBP eCLIP35.99■■■■□ 3.35
HLA-C-208ENST00000487245 KDM5CP41229 1560 aa35.99■■■■□ 3.35
HLA-C-208ENST00000487245 BCANQ96GW7 911 aa35.97■■■■□ 3.35
HLA-C-208ENST00000487245 ZNF326Q5BKZ1 582 aaKnown RBP35.96■■■■□ 3.35
HLA-C-208ENST00000487245 ARAP3Q8WWN8 1544 aa35.94■■■■□ 3.34
HLA-C-208ENST00000487245 IQGAP3Q86VI3 1631 aa35.93■■■■□ 3.34
HLA-C-208ENST00000487245 ERBINQ96RT1 1412 aa35.93■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms