RNA–Protein interactions for RNA: ENST00000486519.5

U2AF1-211, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 3

Gene U2AF1, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-211ENST00000486519 SAMD9Q5K651 1589 aa26.59■■□□□ 1.85
U2AF1-211ENST00000486519 CFAP74Q9C0B2 1584 aa26.59■■□□□ 1.85
U2AF1-211ENST00000486519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.59■■□□□ 1.859e-12■■■■■ 76.3
U2AF1-211ENST00000486519 MAGI2Q86UL8 1455 aa26.52■■□□□ 1.84
U2AF1-211ENST00000486519 DMRT2Q9Y5R5 561 aa26.51■■□□□ 1.83
U2AF1-211ENST00000486519 PTPRTO14522 1441 aa26.48■■□□□ 1.83
U2AF1-211ENST00000486519 UHRF1BP1Q6BDS2 1440 aa26.48■■□□□ 1.83
U2AF1-211ENST00000486519 ATP10AO60312 1499 aa26.45■■□□□ 1.82
U2AF1-211ENST00000486519 SETD1BQ9UPS6 1966 aaKnown RBP26.45■■□□□ 1.82
U2AF1-211ENST00000486519 C9orf84Q5VXU9 1444 aa26.44■■□□□ 1.82
U2AF1-211ENST00000486519 C3P01024 1663 aa26.44■■□□□ 1.82
U2AF1-211ENST00000486519 SCAPERQ9BY12 1400 aa26.43■■□□□ 1.82
U2AF1-211ENST00000486519 FAM9AQ8IZU1 332 aaPredicted RBP26.41■■□□□ 1.82
U2AF1-211ENST00000486519 IQSEC2Q5JU85 1478 aa26.41■■□□□ 1.82
U2AF1-211ENST00000486519 PLEKHD1A6NEE1 506 aa26.39■■□□□ 1.82
U2AF1-211ENST00000486519 NCOA1Q15788 1441 aa26.32■■□□□ 1.8
U2AF1-211ENST00000486519 CDK13Q14004 1512 aaKnown RBP26.32■■□□□ 1.8
U2AF1-211ENST00000486519 RANGAP1P46060 587 aaPredicted RBP26.31■■□□□ 1.8
U2AF1-211ENST00000486519 PLCH2O75038 1416 aa26.3■■□□□ 1.8
U2AF1-211ENST00000486519 DIP2CQ9Y2E4 1556 aa26.29■■□□□ 1.8
U2AF1-211ENST00000486519 MED1Q15648 1581 aaPredicted RBP26.28■■□□□ 1.8
U2AF1-211ENST00000486519 ZNF335Q9H4Z2 1342 aaPredicted RBP26.26■■□□□ 1.79
U2AF1-211ENST00000486519 UBAP1LF5GYI3 381 aa26.26■■□□□ 1.79
U2AF1-211ENST00000486519 MYO5CQ9NQX4 1742 aa26.25■■□□□ 1.79
U2AF1-211ENST00000486519 ABCA6Q8N139 1617 aa26.25■■□□□ 1.79
U2AF1-211ENST00000486519 CAMSAP1Q5T5Y3 1602 aa26.24■■□□□ 1.79
U2AF1-211ENST00000486519 KDM5CP41229 1560 aa26.24■■□□□ 1.79
U2AF1-211ENST00000486519 AFAP1Q8N556 730 aa26.2■■□□□ 1.78
U2AF1-211ENST00000486519 TRAPPC8Q9Y2L5 1435 aa26.2■■□□□ 1.78
U2AF1-211ENST00000486519 KIF14Q15058 1648 aa26.18■■□□□ 1.78
U2AF1-211ENST00000486519 REREQ9P2R6 1566 aa26.18■■□□□ 1.78
U2AF1-211ENST00000486519 NCKAP5LQ9HCH0 1330 aa26.17■■□□□ 1.78
U2AF1-211ENST00000486519 ZNF518AQ6AHZ1 1483 aa26.17■■□□□ 1.78
U2AF1-211ENST00000486519 HSPA1LP34931 641 aa26.12■■□□□ 1.77
U2AF1-211ENST00000486519 EFCAB2Q5VUJ9 269 aa26.12■■□□□ 1.77
U2AF1-211ENST00000486519 AGLP35573 1532 aa26.09■■□□□ 1.77
U2AF1-211ENST00000486519 MYT1LQ9UL68 1186 aa26.07■■□□□ 1.76
U2AF1-211ENST00000486519 ARHGAP5Q13017 1502 aa26.07■■□□□ 1.76
U2AF1-211ENST00000486519 SUPT6HQ7KZ85 1726 aaKnown RBP26.05■■□□□ 1.76
U2AF1-211ENST00000486519 CDC42BPBQ9Y5S2 1711 aa26.04■■□□□ 1.76
U2AF1-211ENST00000486519 CSRNP3Q8WYN3 585 aa26.03■■□□□ 1.76
U2AF1-211ENST00000486519 MLH3Q9UHC1 1453 aa26.03■■□□□ 1.76
U2AF1-211ENST00000486519 MYO3AQ8NEV4 1616 aa26.03■■□□□ 1.76
U2AF1-211ENST00000486519 MROH2AA6NES4 1674 aa26.03■■□□□ 1.76
U2AF1-211ENST00000486519 ZNF142P52746 1687 aaPredicted RBP26.03■■□□□ 1.76
U2AF1-211ENST00000486519 KIDINS220Q9ULH0 1771 aa26.02■■□□□ 1.76
U2AF1-211ENST00000486519 SCAF1Q9H7N4 1312 aaKnown RBP26.01■■□□□ 1.75
U2AF1-211ENST00000486519 PIP4K2BP78356 416 aa26■■□□□ 1.75
U2AF1-211ENST00000486519 ESF1Q9H501 851 aaKnown RBP26■■□□□ 1.75
U2AF1-211ENST00000486519 TCOF1Q13428 1488 aaKnown RBP25.99■■□□□ 1.75
U2AF1-211ENST00000486519 NPATQ14207 1427 aa25.98■■□□□ 1.75
U2AF1-211ENST00000486519 ITSN2Q9NZM3 1697 aa25.98■■□□□ 1.75
U2AF1-211ENST00000486519 CNTLNQ9NXG0 1405 aa25.97■■□□□ 1.75
U2AF1-211ENST00000486519 LRRIQ1Q96JM4 1722 aa25.97■■□□□ 1.75
U2AF1-211ENST00000486519 ABCC1P33527 1531 aa25.95■■□□□ 1.74
U2AF1-211ENST00000486519 PLA2R1Q13018 1463 aa25.95■■□□□ 1.74
U2AF1-211ENST00000486519 CLTCQ00610 1675 aaKnown RBP25.95■■□□□ 1.74
U2AF1-211ENST00000486519 CEP170BQ9Y4F5 1589 aaPredicted RBP25.95■■□□□ 1.74
U2AF1-211ENST00000486519 ALKQ9UM73 1620 aa25.94■■□□□ 1.74
U2AF1-211ENST00000486519 ZMYM3Q14202 1370 aa25.94■■□□□ 1.74
U2AF1-211ENST00000486519 ATP1B4Q9UN42 357 aaPredicted RBP25.9■■□□□ 1.74
U2AF1-211ENST00000486519 PKD2Q13563 968 aa25.89■■□□□ 1.74
U2AF1-211ENST00000486519 PHF23Q9BUL5 403 aaPredicted RBP25.89■■□□□ 1.74
U2AF1-211ENST00000486519 TROQ12816 1431 aaPredicted RBP25.88■■□□□ 1.73
U2AF1-211ENST00000486519 PREX2Q70Z35 1606 aa25.88■■□□□ 1.73
U2AF1-211ENST00000486519 PPP6R1Q9UPN7 881 aa25.88■■□□□ 1.73
U2AF1-211ENST00000486519 PTPRKQ15262 1439 aa25.85■■□□□ 1.73
U2AF1-211ENST00000486519 NEURL4Q96JN8 1562 aa25.84■■□□□ 1.73
U2AF1-211ENST00000486519 POLR1AO95602 1720 aaPredicted RBP25.82■■□□□ 1.72
U2AF1-211ENST00000486519 SAMD9LQ8IVG5 1584 aa25.82■■□□□ 1.72
U2AF1-211ENST00000486519 SENP3Q9H4L4 574 aaPredicted RBP25.81■■□□□ 1.72
U2AF1-211ENST00000486519 DNMT1P26358 1616 aaKnown RBP25.81■■□□□ 1.72
U2AF1-211ENST00000486519 TOM1O60784 492 aa25.8■■□□□ 1.72
U2AF1-211ENST00000486519 CDC42BPAQ5VT25 1732 aa25.8■■□□□ 1.72
U2AF1-211ENST00000486519 CPS1P31327 1500 aa25.78■■□□□ 1.72
U2AF1-211ENST00000486519 SHANK2Q9UPX8 1470 aa25.78■■□□□ 1.72
U2AF1-211ENST00000486519 RGS17Q9UGC6 210 aaPredicted RBP25.77■■□□□ 1.72
U2AF1-211ENST00000486519 CLIP1P30622 1438 aa25.75■■□□□ 1.71
U2AF1-211ENST00000486519 VWDEQ8N2E2 1590 aa25.74■■□□□ 1.71
U2AF1-211ENST00000486519 CDK11AQ9UQ88 783 aaPredicted RBP25.74■■□□□ 1.71
U2AF1-211ENST00000486519 PLXNC1O60486 1568 aa25.73■■□□□ 1.71
U2AF1-211ENST00000486519 ARHGAP35Q9NRY4 1499 aa25.72■■□□□ 1.71
U2AF1-211ENST00000486519 A2ML1A8K2U0 1454 aa25.72■■□□□ 1.71
U2AF1-211ENST00000486519 FMN1Q68DA7 1419 aa25.71■■□□□ 1.71
U2AF1-211ENST00000486519 STRCP1A6NGW2 1772 aa25.71■■□□□ 1.71
U2AF1-211ENST00000486519 SYCP2Q9BX26 1530 aa25.7■■□□□ 1.7
U2AF1-211ENST00000486519 ATP7AQ04656 1500 aa25.66■■□□□ 1.7
U2AF1-211ENST00000486519 INO80Q9ULG1 1556 aaPredicted RBP25.65■■□□□ 1.7
U2AF1-211ENST00000486519 EHMT2Q96KQ7 1210 aa25.65■■□□□ 1.7
U2AF1-211ENST00000486519 GGT6Q6P531 493 aa25.64■■□□□ 1.7
U2AF1-211ENST00000486519 EEA1Q15075 1411 aa25.63■■□□□ 1.69
U2AF1-211ENST00000486519 A2MP01023 1474 aa25.63■■□□□ 1.69
U2AF1-211ENST00000486519 SPAG9O60271 1321 aaKnown RBP25.62■■□□□ 1.69
U2AF1-211ENST00000486519 HNRNPMP52272 730 aaKnown RBP eCLIP25.6■■□□□ 1.69
U2AF1-211ENST00000486519 ZNF777Q9ULD5 760 aaPredicted RBP25.6■■□□□ 1.69
U2AF1-211ENST00000486519 SETD1AO15047 1707 aaKnown RBP25.6■■□□□ 1.69
U2AF1-211ENST00000486519 FBXO31Q5XUX0 539 aaPredicted RBP25.57■■□□□ 1.68
U2AF1-211ENST00000486519 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.56■■□□□ 1.681e-7■■■■■ 38.4
U2AF1-211ENST00000486519 LRRC7Q96NW7 1537 aa25.55■■□□□ 1.68
U2AF1-211ENST00000486519 POTEAQ6S8J7 498 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms