RNA–Protein interactions for RNA: ENST00000486037.1

SND1-213, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 695 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-213ENST00000486037 LTBP4Q8N2S1 1624 aa16.98■□□□□ 0.31
SND1-213ENST00000486037 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.97■□□□□ 0.312e-6■■■■□ 24.9
SND1-213ENST00000486037 SAMD9Q5K651 1589 aa16.96■□□□□ 0.31
SND1-213ENST00000486037 DMRT2Q9Y5R5 561 aa16.95■□□□□ 0.3
SND1-213ENST00000486037 CFAP74Q9C0B2 1584 aa16.94■□□□□ 0.3
SND1-213ENST00000486037 MAGI2Q86UL8 1455 aa16.94■□□□□ 0.3
SND1-213ENST00000486037 PTPRTO14522 1441 aa16.93■□□□□ 0.3
SND1-213ENST00000486037 UHRF1BP1Q6BDS2 1440 aa16.92■□□□□ 0.3
SND1-213ENST00000486037 ATP10AO60312 1499 aa16.9■□□□□ 0.3
SND1-213ENST00000486037 C9orf84Q5VXU9 1444 aa16.89■□□□□ 0.29
SND1-213ENST00000486037 SCAPERQ9BY12 1400 aa16.89■□□□□ 0.29
SND1-213ENST00000486037 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
SND1-213ENST00000486037 PLEKHD1A6NEE1 506 aa16.88■□□□□ 0.29
SND1-213ENST00000486037 IQSEC2Q5JU85 1478 aa16.86■□□□□ 0.29
SND1-213ENST00000486037 SETD1BQ9UPS6 1966 aaKnown RBP16.84■□□□□ 0.29
SND1-213ENST00000486037 C3P01024 1663 aa16.83■□□□□ 0.28
SND1-213ENST00000486037 NCOA1Q15788 1441 aa16.82■□□□□ 0.28
SND1-213ENST00000486037 RANGAP1P46060 587 aaPredicted RBP16.82■□□□□ 0.28
SND1-213ENST00000486037 PLCH2O75038 1416 aa16.81■□□□□ 0.28
SND1-213ENST00000486037 CDK13Q14004 1512 aaKnown RBP16.8■□□□□ 0.28
SND1-213ENST00000486037 UBAP1LF5GYI3 381 aa16.79■□□□□ 0.28
SND1-213ENST00000486037 ZNF335Q9H4Z2 1342 aaPredicted RBP16.78■□□□□ 0.28
SND1-213ENST00000486037 DIP2CQ9Y2E4 1556 aa16.77■□□□□ 0.27
SND1-213ENST00000486037 MED1Q15648 1581 aaPredicted RBP16.76■□□□□ 0.27
SND1-213ENST00000486037 AFAP1Q8N556 730 aa16.75■□□□□ 0.27
SND1-213ENST00000486037 TRAPPC8Q9Y2L5 1435 aa16.75■□□□□ 0.27
SND1-213ENST00000486037 CAMSAP1Q5T5Y3 1602 aa16.74■□□□□ 0.27
SND1-213ENST00000486037 KDM5CP41229 1560 aa16.74■□□□□ 0.27
SND1-213ENST00000486037 NCKAP5LQ9HCH0 1330 aa16.73■□□□□ 0.27
SND1-213ENST00000486037 ABCA6Q8N139 1617 aa16.73■□□□□ 0.27
SND1-213ENST00000486037 ZNF518AQ6AHZ1 1483 aa16.72■□□□□ 0.27
SND1-213ENST00000486037 REREQ9P2R6 1566 aa16.7■□□□□ 0.26
SND1-213ENST00000486037 HSPA1LP34931 641 aa16.7■□□□□ 0.26
SND1-213ENST00000486037 EFCAB2Q5VUJ9 269 aa16.7■□□□□ 0.26
SND1-213ENST00000486037 MYO5CQ9NQX4 1742 aa16.7■□□□□ 0.26
SND1-213ENST00000486037 KIF14Q15058 1648 aa16.68■□□□□ 0.26
SND1-213ENST00000486037 AGLP35573 1532 aa16.66■□□□□ 0.26
SND1-213ENST00000486037 MYT1LQ9UL68 1186 aa16.66■□□□□ 0.26
SND1-213ENST00000486037 CSRNP3Q8WYN3 585 aa16.65■□□□□ 0.26
SND1-213ENST00000486037 ARHGAP5Q13017 1502 aa16.64■□□□□ 0.25
SND1-213ENST00000486037 MLH3Q9UHC1 1453 aa16.63■□□□□ 0.25
SND1-213ENST00000486037 PIP4K2BP78356 416 aa16.62■□□□□ 0.25
SND1-213ENST00000486037 ESF1Q9H501 851 aaKnown RBP16.62■□□□□ 0.25
SND1-213ENST00000486037 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
SND1-213ENST00000486037 NPATQ14207 1427 aa16.61■□□□□ 0.25
SND1-213ENST00000486037 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
SND1-213ENST00000486037 CNTLNQ9NXG0 1405 aa16.6■□□□□ 0.25
SND1-213ENST00000486037 KIDINS220Q9ULH0 1771 aa16.59■□□□□ 0.25
SND1-213ENST00000486037 ZMYM3Q14202 1370 aa16.58■□□□□ 0.24
SND1-213ENST00000486037 PLA2R1Q13018 1463 aa16.58■□□□□ 0.24
SND1-213ENST00000486037 MYO3AQ8NEV4 1616 aa16.58■□□□□ 0.24
SND1-213ENST00000486037 ZNF142P52746 1687 aaPredicted RBP16.58■□□□□ 0.24
SND1-213ENST00000486037 CDC42BPBQ9Y5S2 1711 aa16.58■□□□□ 0.24
SND1-213ENST00000486037 MROH2AA6NES4 1674 aa16.57■□□□□ 0.24
SND1-213ENST00000486037 ABCC1P33527 1531 aa16.56■□□□□ 0.24
SND1-213ENST00000486037 PKD2Q13563 968 aa16.56■□□□□ 0.24
SND1-213ENST00000486037 ATP1B4Q9UN42 357 aaPredicted RBP16.56■□□□□ 0.24
SND1-213ENST00000486037 PHF23Q9BUL5 403 aaPredicted RBP16.55■□□□□ 0.24
SND1-213ENST00000486037 ALKQ9UM73 1620 aa16.55■□□□□ 0.24
SND1-213ENST00000486037 CEP170BQ9Y4F5 1589 aaPredicted RBP16.55■□□□□ 0.24
SND1-213ENST00000486037 TROQ12816 1431 aaPredicted RBP16.54■□□□□ 0.24
SND1-213ENST00000486037 ITSN2Q9NZM3 1697 aa16.54■□□□□ 0.24
SND1-213ENST00000486037 PPP6R1Q9UPN7 881 aa16.54■□□□□ 0.24
SND1-213ENST00000486037 SUPT6HQ7KZ85 1726 aaKnown RBP16.53■□□□□ 0.24
SND1-213ENST00000486037 CLTCQ00610 1675 aaKnown RBP16.52■□□□□ 0.23
SND1-213ENST00000486037 PTPRKQ15262 1439 aa16.52■□□□□ 0.23
SND1-213ENST00000486037 LRRIQ1Q96JM4 1722 aa16.5■□□□□ 0.23
SND1-213ENST00000486037 PREX2Q70Z35 1606 aa16.49■□□□□ 0.23
SND1-213ENST00000486037 TOM1O60784 492 aa16.49■□□□□ 0.23
SND1-213ENST00000486037 SENP3Q9H4L4 574 aaPredicted RBP16.49■□□□□ 0.23
SND1-213ENST00000486037 NEURL4Q96JN8 1562 aa16.48■□□□□ 0.23
SND1-213ENST00000486037 RGS17Q9UGC6 210 aaPredicted RBP16.48■□□□□ 0.23
SND1-213ENST00000486037 SAMD9LQ8IVG5 1584 aa16.47■□□□□ 0.23
SND1-213ENST00000486037 CDK11AQ9UQ88 783 aaPredicted RBP16.47■□□□□ 0.23
SND1-213ENST00000486037 CPS1P31327 1500 aa16.46■□□□□ 0.23
SND1-213ENST00000486037 SHANK2Q9UPX8 1470 aa16.46■□□□□ 0.23
SND1-213ENST00000486037 DNMT1P26358 1616 aaKnown RBP16.45■□□□□ 0.22
SND1-213ENST00000486037 CLIP1P30622 1438 aa16.45■□□□□ 0.22
SND1-213ENST00000486037 FMN1Q68DA7 1419 aa16.44■□□□□ 0.22
SND1-213ENST00000486037 ARHGAP35Q9NRY4 1499 aa16.43■□□□□ 0.22
SND1-213ENST00000486037 PLXNC1O60486 1568 aa16.43■□□□□ 0.22
SND1-213ENST00000486037 VWDEQ8N2E2 1590 aa16.43■□□□□ 0.22
SND1-213ENST00000486037 A2ML1A8K2U0 1454 aa16.42■□□□□ 0.22
SND1-213ENST00000486037 POLR1AO95602 1720 aaPredicted RBP16.42■□□□□ 0.22
SND1-213ENST00000486037 CDC42BPAQ5VT25 1732 aa16.41■□□□□ 0.22
SND1-213ENST00000486037 SYCP2Q9BX26 1530 aa16.4■□□□□ 0.22
SND1-213ENST00000486037 GGT6Q6P531 493 aa16.4■□□□□ 0.22
SND1-213ENST00000486037 EHMT2Q96KQ7 1210 aa16.4■□□□□ 0.22
SND1-213ENST00000486037 EEA1Q15075 1411 aa16.38■□□□□ 0.21
SND1-213ENST00000486037 SPAG9O60271 1321 aaKnown RBP16.38■□□□□ 0.21
SND1-213ENST00000486037 A2MP01023 1474 aa16.37■□□□□ 0.21
SND1-213ENST00000486037 ATP7AQ04656 1500 aa16.37■□□□□ 0.21
SND1-213ENST00000486037 HNRNPMP52272 730 aaKnown RBP eCLIP16.37■□□□□ 0.211e-7■■■■□ 22.3
SND1-213ENST00000486037 ZNF777Q9ULD5 760 aaPredicted RBP16.37■□□□□ 0.21
SND1-213ENST00000486037 STRCP1A6NGW2 1772 aa16.36■□□□□ 0.21
SND1-213ENST00000486037 INO80Q9ULG1 1556 aaPredicted RBP16.36■□□□□ 0.21
SND1-213ENST00000486037 FBXO31Q5XUX0 539 aaPredicted RBP16.35■□□□□ 0.21
SND1-213ENST00000486037 POTEAQ6S8J7 498 aa16.34■□□□□ 0.21
SND1-213ENST00000486037 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.34■□□□□ 0.214e-6■■■■□ 20
SND1-213ENST00000486037 LRRC7Q96NW7 1537 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms