RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 ABCC8Q09428 1581 aa10.28□□□□□ -0.76
PTPN4-210ENST00000485247 PDAP1Q13442 181 aaKnown RBP10.28□□□□□ -0.76
PTPN4-210ENST00000485247 IER5LQ5T953 404 aa10.28□□□□□ -0.76
PTPN4-210ENST00000485247 CHMP7Q8WUX9 453 aaPredicted RBP10.28□□□□□ -0.76
PTPN4-210ENST00000485247 PKD2Q13563 968 aa10.27□□□□□ -0.77
PTPN4-210ENST00000485247 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
PTPN4-210ENST00000485247 DNMBPQ6XZF7 1577 aa10.26□□□□□ -0.77
PTPN4-210ENST00000485247 GAPVD1Q14C86 1478 aa10.25□□□□□ -0.77
PTPN4-210ENST00000485247 SYNJ1O43426 1573 aa10.25□□□□□ -0.77
PTPN4-210ENST00000485247 SNAPC4Q5SXM2 1469 aa10.24□□□□□ -0.77
PTPN4-210ENST00000485247 IRX5P78411 483 aaPredicted RBP10.24□□□□□ -0.77
PTPN4-210ENST00000485247 OTUD5Q96G74 571 aa10.24□□□□□ -0.77
PTPN4-210ENST00000485247 RAD54L2Q9Y4B4 1467 aa10.23□□□□□ -0.77
PTPN4-210ENST00000485247 RIOK3O14730 519 aaKnown RBP10.23□□□□□ -0.77
PTPN4-210ENST00000485247 POLA1P09884 1462 aaPredicted RBP10.23□□□□□ -0.77
PTPN4-210ENST00000485247 SEC24BO95487 1268 aa10.22□□□□□ -0.77
PTPN4-210ENST00000485247 ECM2O94769 699 aaPredicted RBP10.21□□□□□ -0.77
PTPN4-210ENST00000485247 CCDC88BA6NC98 1476 aa10.21□□□□□ -0.78
PTPN4-210ENST00000485247 SOGA1O94964 1423 aa10.2□□□□□ -0.78
PTPN4-210ENST00000485247 KDM4FA0A1W2PPD8 638 aa10.19□□□□□ -0.78
PTPN4-210ENST00000485247 CABP2Q9NPB3 220 aa10.18□□□□□ -0.78
PTPN4-210ENST00000485247 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-210ENST00000485247 RGL2O15211 777 aa10.17□□□□□ -0.78
PTPN4-210ENST00000485247 PLCG2P16885 1265 aa10.17□□□□□ -0.78
PTPN4-210ENST00000485247 ZFP91Q96JP5 570 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-210ENST00000485247 MAGI1Q96QZ7 1491 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-210ENST00000485247 VGFO15240 615 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-210ENST00000485247 GOLGA2Q08379 1002 aa10.16□□□□□ -0.78
PTPN4-210ENST00000485247 PDCD7Q8N8D1 485 aaKnown RBP10.16□□□□□ -0.78
PTPN4-210ENST00000485247 OCEL1Q9H607 264 aa10.16□□□□□ -0.78
PTPN4-210ENST00000485247 SYNJ2O15056 1496 aa10.16□□□□□ -0.78
PTPN4-210ENST00000485247 MKRN3Q13064 507 aaKnown RBP10.15□□□□□ -0.78
PTPN4-210ENST00000485247 GRIN2BQ13224 1484 aa10.14□□□□□ -0.79
PTPN4-210ENST00000485247 ERCC6L2Q5T890 1561 aa10.14□□□□□ -0.79
PTPN4-210ENST00000485247 KIF13AQ9H1H9 1805 aa10.12□□□□□ -0.79
PTPN4-210ENST00000485247 MAMSTRQ6ZN01 415 aa10.11□□□□□ -0.79
PTPN4-210ENST00000485247 EFCAB3Q8N7B9 438 aa10.11□□□□□ -0.79
PTPN4-210ENST00000485247 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.11□□□□□ -0.795e-7■■■□□ 14.9
PTPN4-210ENST00000485247 FGD5Q6ZNL6 1462 aa10.1□□□□□ -0.79
PTPN4-210ENST00000485247 WDR97A6NE52 1622 aa10.1□□□□□ -0.79
PTPN4-210ENST00000485247 FAM69CQ0P6D2 419 aa10.09□□□□□ -0.79
PTPN4-210ENST00000485247 SCUBE2Q9NQ36 999 aa10.09□□□□□ -0.79
PTPN4-210ENST00000485247 BCL11BQ9C0K0 894 aaPredicted RBP10.07□□□□□ -0.8
PTPN4-210ENST00000485247 DPY19L2Q6NUT2 758 aa10.06□□□□□ -0.8
PTPN4-210ENST00000485247 CEP170Q5SW79 1584 aa10.05□□□□□ -0.8
PTPN4-210ENST00000485247 PBRM1Q86U86 1689 aa10.03□□□□□ -0.8
PTPN4-210ENST00000485247 STK25O00506 426 aa10.03□□□□□ -0.8
PTPN4-210ENST00000485247 TAOK2Q9UL54 1235 aa10.03□□□□□ -0.8
PTPN4-210ENST00000485247 STK24Q9Y6E0 443 aa10.03□□□□□ -0.8
PTPN4-210ENST00000485247 ABCC10Q5T3U5 1492 aa10.03□□□□□ -0.8
PTPN4-210ENST00000485247 KDM6BO15054 1643 aa10.02□□□□□ -0.81
PTPN4-210ENST00000485247 CUX1P39880 1505 aa10.02□□□□□ -0.81
PTPN4-210ENST00000485247 GRIN2AQ12879 1464 aa10.01□□□□□ -0.81
PTPN4-210ENST00000485247 MS4A4AQ96JQ5 239 aa10□□□□□ -0.81
PTPN4-210ENST00000485247 PHF8Q9UPP1 1060 aa10□□□□□ -0.81
PTPN4-210ENST00000485247 SOX12O15370 315 aa9.99□□□□□ -0.81
PTPN4-210ENST00000485247 NUP160Q12769 1436 aa9.99□□□□□ -0.81
PTPN4-210ENST00000485247 L3MBTL3Q96JM7 780 aaPredicted RBP9.98□□□□□ -0.81
PTPN4-210ENST00000485247 HECW2Q9P2P5 1572 aa9.97□□□□□ -0.81
PTPN4-210ENST00000485247 SLAIN1Q8ND83 568 aa9.97□□□□□ -0.81
PTPN4-210ENST00000485247 PRG4Q92954 1404 aaPredicted RBP9.97□□□□□ -0.81
PTPN4-210ENST00000485247 DIP2BQ9P265 1576 aa9.97□□□□□ -0.81
PTPN4-210ENST00000485247 SHROOM2Q13796 1616 aa9.96□□□□□ -0.81
PTPN4-210ENST00000485247 FBXO22Q8NEZ5 403 aa9.96□□□□□ -0.82
PTPN4-210ENST00000485247 MFRPQ9BY79 579 aa9.96□□□□□ -0.82
PTPN4-210ENST00000485247 ADGRL1O94910 1474 aa9.96□□□□□ -0.82
PTPN4-210ENST00000485247 FBXO41Q8TF61 875 aa9.95□□□□□ -0.82
PTPN4-210ENST00000485247 BOLA1Q9Y3E2 137 aa9.95□□□□□ -0.82
PTPN4-210ENST00000485247 ABCA5Q8WWZ7 1642 aa9.95□□□□□ -0.82
PTPN4-210ENST00000485247 TSPOAP1O95153 1857 aa9.95□□□□□ -0.82
PTPN4-210ENST00000485247 MAPKBP1O60336 1514 aa9.94□□□□□ -0.82
PTPN4-210ENST00000485247 ABCA10Q8WWZ4 1543 aa9.94□□□□□ -0.82
PTPN4-210ENST00000485247 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.94□□□□□ -0.82
PTPN4-210ENST00000485247 LCE2DQ5TA82 110 aaPredicted RBP9.93□□□□□ -0.82
PTPN4-210ENST00000485247 C3orf67Q6ZVT6 689 aa9.93□□□□□ -0.82
PTPN4-210ENST00000485247 HS6ST3Q8IZP7 471 aa9.93□□□□□ -0.82
PTPN4-210ENST00000485247 JPH4Q96JJ6 628 aa9.93□□□□□ -0.82
PTPN4-210ENST00000485247 TMEM121BQ9BXQ6 578 aaPredicted RBP9.93□□□□□ -0.82
PTPN4-210ENST00000485247 ADAMTS12P58397 1594 aa9.92□□□□□ -0.82
PTPN4-210ENST00000485247 NLRP6P59044 892 aa9.91□□□□□ -0.82
PTPN4-210ENST00000485247 FHAD1B1AJZ9 1412 aa9.9□□□□□ -0.83
PTPN4-210ENST00000485247 CHGAP10645 457 aaKnown RBP9.89□□□□□ -0.83
PTPN4-210ENST00000485247 MICALL2Q8IY33 904 aa9.89□□□□□ -0.83
PTPN4-210ENST00000485247 ADCY10Q96PN6 1610 aa9.88□□□□□ -0.83
PTPN4-210ENST00000485247 G3V3G9 751 aa9.87□□□□□ -0.83
PTPN4-210ENST00000485247 FAM163AQ96GL9 167 aaPredicted RBP9.86□□□□□ -0.83
PTPN4-210ENST00000485247 NKX1-1Q15270 411 aaPredicted RBP9.84□□□□□ -0.83
PTPN4-210ENST00000485247 TMEM92Q6UXU6 159 aa9.84□□□□□ -0.83
PTPN4-210ENST00000485247 LMTK3Q96Q04 1460 aa9.84□□□□□ -0.83
PTPN4-210ENST00000485247 WRNQ14191 1432 aaPredicted RBP eCLIP9.83□□□□□ -0.84
PTPN4-210ENST00000485247 PPP1R37O75864 691 aa9.82□□□□□ -0.84
PTPN4-210ENST00000485247 RTN4Q9NQC3 1192 aaKnown RBP9.82□□□□□ -0.84
PTPN4-210ENST00000485247 COL17A1Q9UMD9 1497 aaPredicted RBP9.82□□□□□ -0.84
PTPN4-210ENST00000485247 POTEMA6NI47 508 aa9.8□□□□□ -0.84
PTPN4-210ENST00000485247 TTBK1Q5TCY1 1321 aaPredicted RBP9.8□□□□□ -0.84
PTPN4-210ENST00000485247 ERICH3Q5RHP9 1530 aa9.79□□□□□ -0.84
PTPN4-210ENST00000485247 ST18O60284 1047 aa9.79□□□□□ -0.84
PTPN4-210ENST00000485247 AMER1Q5JTC6 1135 aaPredicted RBP9.79□□□□□ -0.84
PTPN4-210ENST00000485247 POTEGQ6S5H5 508 aa9.79□□□□□ -0.84
PTPN4-210ENST00000485247 PPRC1Q5VV67 1664 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms