RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 PLCH2O75038 1416 aa18.95■□□□□ 0.62
TTC28-206ENST00000480563 CDK13Q14004 1512 aaKnown RBP18.93■□□□□ 0.62
TTC28-206ENST00000480563 EFCAB2Q5VUJ9 269 aa18.92■□□□□ 0.62
TTC28-206ENST00000480563 ATP1B4Q9UN42 357 aaPredicted RBP18.92■□□□□ 0.62
TTC28-206ENST00000480563 ATP10AO60312 1499 aa18.91■□□□□ 0.62
TTC28-206ENST00000480563 CEBPAP49715 358 aaPredicted RBP18.91■□□□□ 0.62
TTC28-206ENST00000480563 FER1L4A9Z1Z3 1794 aa18.88■□□□□ 0.61
TTC28-206ENST00000480563 C9orf84Q5VXU9 1444 aa18.88■□□□□ 0.61
TTC28-206ENST00000480563 ARHGEF12Q9NZN5 1544 aa18.88■□□□□ 0.61
TTC28-206ENST00000480563 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
TTC28-206ENST00000480563 DMRT2Q9Y5R5 561 aa18.86■□□□□ 0.61
TTC28-206ENST00000480563 AFAP1Q8N556 730 aa18.84■□□□□ 0.61
TTC28-206ENST00000480563 MYT1LQ9UL68 1186 aa18.84■□□□□ 0.61
TTC28-206ENST00000480563 UBTFP17480 764 aaKnown RBP18.82■□□□□ 0.6
TTC28-206ENST00000480563 EHMT2Q96KQ7 1210 aa18.82■□□□□ 0.6
TTC28-206ENST00000480563 FMN1Q68DA7 1419 aa18.81■□□□□ 0.6
TTC28-206ENST00000480563 PREX1Q8TCU6 1659 aa18.8■□□□□ 0.6
TTC28-206ENST00000480563 ZNF518AQ6AHZ1 1483 aa18.8■□□□□ 0.6
TTC28-206ENST00000480563 UHRF1BP1Q6BDS2 1440 aa18.79■□□□□ 0.6
TTC28-206ENST00000480563 DISP3Q9P2K9 1392 aa18.79■□□□□ 0.6
TTC28-206ENST00000480563 MYO5CQ9NQX4 1742 aa18.78■□□□□ 0.6
TTC28-206ENST00000480563 ILDR2Q71H61 639 aa18.77■□□□□ 0.6
TTC28-206ENST00000480563 TROQ12816 1431 aaPredicted RBP18.76■□□□□ 0.59
TTC28-206ENST00000480563 ARHGAP5Q13017 1502 aa18.76■□□□□ 0.59
TTC28-206ENST00000480563 KIF14Q15058 1648 aa18.75■□□□□ 0.59
TTC28-206ENST00000480563 STRCQ7RTU9 1775 aa18.74■□□□□ 0.59
TTC28-206ENST00000480563 ARHGAP35Q9NRY4 1499 aa18.74■□□□□ 0.59
TTC28-206ENST00000480563 ESF1Q9H501 851 aaKnown RBP18.74■□□□□ 0.59
TTC28-206ENST00000480563 CLIP1P30622 1438 aa18.74■□□□□ 0.59
TTC28-206ENST00000480563 KDM5CP41229 1560 aa18.73■□□□□ 0.59
TTC28-206ENST00000480563 SOCS7O14512 581 aa18.71■□□□□ 0.59
TTC28-206ENST00000480563 PTPRTO14522 1441 aa18.71■□□□□ 0.59
TTC28-206ENST00000480563 SETD1BQ9UPS6 1966 aaKnown RBP18.71■□□□□ 0.59
TTC28-206ENST00000480563 DIP2CQ9Y2E4 1556 aa18.71■□□□□ 0.59
TTC28-206ENST00000480563 MLH3Q9UHC1 1453 aa18.71■□□□□ 0.59
TTC28-206ENST00000480563 REREQ9P2R6 1566 aa18.68■□□□□ 0.58
TTC28-206ENST00000480563 TRAPPC8Q9Y2L5 1435 aa18.68■□□□□ 0.58
TTC28-206ENST00000480563 AGLP35573 1532 aa18.66■□□□□ 0.58
TTC28-206ENST00000480563 ABCA6Q8N139 1617 aa18.65■□□□□ 0.58
TTC28-206ENST00000480563 C3P01024 1663 aa18.64■□□□□ 0.57
TTC28-206ENST00000480563 CDC42BPBQ9Y5S2 1711 aa18.63■□□□□ 0.57
TTC28-206ENST00000480563 CNTLNQ9NXG0 1405 aa18.62■□□□□ 0.57
TTC28-206ENST00000480563 LTBP4Q8N2S1 1624 aa18.61■□□□□ 0.57
TTC28-206ENST00000480563 NCOA1Q15788 1441 aa18.61■□□□□ 0.57
TTC28-206ENST00000480563 ABCC1P33527 1531 aa18.6■□□□□ 0.57
TTC28-206ENST00000480563 ZNF777Q9ULD5 760 aaPredicted RBP18.59■□□□□ 0.57
TTC28-206ENST00000480563 LRRIQ1Q96JM4 1722 aa18.59■□□□□ 0.57
TTC28-206ENST00000480563 PREX2Q70Z35 1606 aa18.58■□□□□ 0.56
TTC28-206ENST00000480563 ZMYM3Q14202 1370 aa18.57■□□□□ 0.56
TTC28-206ENST00000480563 IQSEC2Q5JU85 1478 aa18.57■□□□□ 0.56
TTC28-206ENST00000480563 CASKIN1Q8WXD9 1431 aa18.57■□□□□ 0.56
TTC28-206ENST00000480563 SPATA31D1Q6ZQQ2 1576 aa18.56■□□□□ 0.56
TTC28-206ENST00000480563 KIDINS220Q9ULH0 1771 aa18.56■□□□□ 0.56
TTC28-206ENST00000480563 CCDC18Q5T9S5 1454 aa18.56■□□□□ 0.56
TTC28-206ENST00000480563 ITSN2Q9NZM3 1697 aa18.56■□□□□ 0.56
TTC28-206ENST00000480563 SPAG9O60271 1321 aaKnown RBP18.55■□□□□ 0.56
TTC28-206ENST00000480563 NCKAP5LQ9HCH0 1330 aa18.55■□□□□ 0.56
TTC28-206ENST00000480563 NPATQ14207 1427 aa18.55■□□□□ 0.56
TTC28-206ENST00000480563 HNRNPMP52272 730 aaKnown RBP eCLIP18.54■□□□□ 0.56
TTC28-206ENST00000480563 CAMSAP1Q5T5Y3 1602 aa18.53■□□□□ 0.56
TTC28-206ENST00000480563 ZNF335Q9H4Z2 1342 aaPredicted RBP18.51■□□□□ 0.55
TTC28-206ENST00000480563 SAMD9LQ8IVG5 1584 aa18.51■□□□□ 0.55
TTC28-206ENST00000480563 UBAP1LF5GYI3 381 aa18.51■□□□□ 0.55
TTC28-206ENST00000480563 CHIC1Q5VXU3 224 aa18.51■□□□□ 0.55
TTC28-206ENST00000480563 PKD2Q13563 968 aa18.49■□□□□ 0.55
TTC28-206ENST00000480563 CDC42BPAQ5VT25 1732 aa18.49■□□□□ 0.55
TTC28-206ENST00000480563 GPATCH8Q9UKJ3 1502 aaKnown RBP18.49■□□□□ 0.55
TTC28-206ENST00000480563 MROH2AA6NES4 1674 aa18.48■□□□□ 0.55
TTC28-206ENST00000480563 GGT6Q6P531 493 aa18.48■□□□□ 0.55
TTC28-206ENST00000480563 CFDP1Q9UEE9 299 aaPredicted RBP18.47■□□□□ 0.55
TTC28-206ENST00000480563 SYCP2Q9BX26 1530 aa18.47■□□□□ 0.55
TTC28-206ENST00000480563 KIAA1107Q9UPP5 1409 aa18.45■□□□□ 0.54
TTC28-206ENST00000480563 A2MP01023 1474 aa18.45■□□□□ 0.54
TTC28-206ENST00000480563 SUPT6HQ7KZ85 1726 aaKnown RBP18.44■□□□□ 0.54
TTC28-206ENST00000480563 PTPRKQ15262 1439 aa18.44■□□□□ 0.54
TTC28-206ENST00000480563 PLA2R1Q13018 1463 aa18.44■□□□□ 0.54
TTC28-206ENST00000480563 FYCO1Q9BQS8 1478 aa18.44■□□□□ 0.54
TTC28-206ENST00000480563 ATP7AQ04656 1500 aa18.44■□□□□ 0.54
TTC28-206ENST00000480563 PLEKHH2Q8IVE3 1493 aa18.42■□□□□ 0.54
TTC28-206ENST00000480563 PPP6R1Q9UPN7 881 aa18.42■□□□□ 0.54
TTC28-206ENST00000480563 CLTCQ00610 1675 aaKnown RBP18.41■□□□□ 0.54
TTC28-206ENST00000480563 TCOF1Q13428 1488 aaKnown RBP18.41■□□□□ 0.54
TTC28-206ENST00000480563 CCNB3Q8WWL7 1395 aa18.41■□□□□ 0.54
TTC28-206ENST00000480563 PLXNC1O60486 1568 aa18.39■□□□□ 0.53
TTC28-206ENST00000480563 CEP170BQ9Y4F5 1589 aaPredicted RBP18.39■□□□□ 0.53
TTC28-206ENST00000480563 MYO3AQ8NEV4 1616 aa18.39■□□□□ 0.53
TTC28-206ENST00000480563 INO80Q9ULG1 1556 aaPredicted RBP18.38■□□□□ 0.53
TTC28-206ENST00000480563 ZNF142P52746 1687 aaPredicted RBP18.37■□□□□ 0.53
TTC28-206ENST00000480563 ZNF644Q9H582 1327 aaPredicted RBP18.36■□□□□ 0.53
TTC28-206ENST00000480563 MTUS2Q5JR59 1369 aa18.34■□□□□ 0.53
TTC28-206ENST00000480563 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
TTC28-206ENST00000480563 A2ML1A8K2U0 1454 aa18.33■□□□□ 0.53
TTC28-206ENST00000480563 HSPA1LP34931 641 aa18.33■□□□□ 0.52
TTC28-206ENST00000480563 PIP4K2BP78356 416 aa18.33■□□□□ 0.52
TTC28-206ENST00000480563 TOM1O60784 492 aa18.32■□□□□ 0.52
TTC28-206ENST00000480563 FBXO31Q5XUX0 539 aaPredicted RBP18.32■□□□□ 0.52
TTC28-206ENST00000480563 DHX29Q7Z478 1369 aaKnown RBP18.3■□□□□ 0.52
TTC28-206ENST00000480563 MBD5Q9P267 1494 aa18.3■□□□□ 0.52
TTC28-206ENST00000480563 DNMT1P26358 1616 aaKnown RBP18.3■□□□□ 0.52
TTC28-206ENST00000480563 ADGBQ8N7X0 1667 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms