RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 DENND4BO75064 1496 aaPredicted RBP25.07■■□□□ 1.6
CCDC88B-207ENST00000479965 EIF5BO60841 1220 aaKnown RBP25.07■■□□□ 1.6
CCDC88B-207ENST00000479965 TCERG1O14776 1098 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-207ENST00000479965 USP35Q9P2H5 1018 aa25.06■■□□□ 1.6
CCDC88B-207ENST00000479965 PPM1GO15355 546 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-207ENST00000479965 HMGXB3Q12766 1538 aa25.03■■□□□ 1.6
CCDC88B-207ENST00000479965 RRP1P56182 461 aaKnown RBP25.02■■□□□ 1.6
CCDC88B-207ENST00000479965 EFCAB5A4FU69 1503 aa25.01■■□□□ 1.59
CCDC88B-207ENST00000479965 SKAP1Q86WV1 359 aa25.01■■□□□ 1.59
CCDC88B-207ENST00000479965 PNISRQ8TF01 805 aaKnown RBP25.01■■□□□ 1.59
CCDC88B-207ENST00000479965 SLC4A1APQ9BWU0 796 aaKnown RBP25.01■■□□□ 1.59
CCDC88B-207ENST00000479965 BACH2Q9BYV9 841 aa25.01■■□□□ 1.59
CCDC88B-207ENST00000479965 SNAPC4Q5SXM2 1469 aa24.98■■□□□ 1.59
CCDC88B-207ENST00000479965 RAD54L2Q9Y4B4 1467 aa24.98■■□□□ 1.59
CCDC88B-207ENST00000479965 SLC4A3P48751 1232 aa24.97■■□□□ 1.59
CCDC88B-207ENST00000479965 DHX29Q7Z478 1369 aaKnown RBP24.97■■□□□ 1.59
CCDC88B-207ENST00000479965 RCAN3Q9UKA8 241 aa24.96■■□□□ 1.59
CCDC88B-207ENST00000479965 KDM6BO15054 1643 aa24.96■■□□□ 1.59
CCDC88B-207ENST00000479965 WASHC2CQ9Y4E1 1318 aa24.94■■□□□ 1.58
CCDC88B-207ENST00000479965 GSE1Q14687 1217 aa24.94■■□□□ 1.58
CCDC88B-207ENST00000479965 SPATA31E1Q6ZUB1 1445 aa24.93■■□□□ 1.58
CCDC88B-207ENST00000479965 DAXXQ9UER7 740 aaPredicted RBP24.92■■□□□ 1.58
CCDC88B-207ENST00000479965 CADPSQ9ULU8 1353 aa24.92■■□□□ 1.58
CCDC88B-207ENST00000479965 ANKRD30BQ9BXX2 1392 aa24.9■■□□□ 1.58
CCDC88B-207ENST00000479965 PLIN1O60240 522 aa24.9■■□□□ 1.58
CCDC88B-207ENST00000479965 HECW1Q76N89 1606 aa24.89■■□□□ 1.57
CCDC88B-207ENST00000479965 NFKBIBQ15653 356 aa24.88■■□□□ 1.57
CCDC88B-207ENST00000479965 SUPT6HQ7KZ85 1726 aaKnown RBP24.88■■□□□ 1.57
CCDC88B-207ENST00000479965 USP47Q96K76 1375 aa24.88■■□□□ 1.57
CCDC88B-207ENST00000479965 RPRD2Q5VT52 1461 aaKnown RBP24.87■■□□□ 1.57
CCDC88B-207ENST00000479965 MS4A1P11836 297 aa24.86■■□□□ 1.57
CCDC88B-207ENST00000479965 DDRGK1Q96HY6 314 aa24.86■■□□□ 1.57
CCDC88B-207ENST00000479965 FRAT1Q92837 279 aaPredicted RBP24.86■■□□□ 1.57
CCDC88B-207ENST00000479965 TEX14Q8IWB6 1497 aa24.83■■□□□ 1.57
CCDC88B-207ENST00000479965 EHBP1L1Q8N3D4 1523 aa24.82■■□□□ 1.56
CCDC88B-207ENST00000479965 CDCA7LQ96GN5 454 aa24.81■■□□□ 1.56
CCDC88B-207ENST00000479965 UGGT2Q9NYU1 1516 aa24.81■■□□□ 1.56
CCDC88B-207ENST00000479965 UBE2Q2Q8WVN8 375 aa24.79■■□□□ 1.56
CCDC88B-207ENST00000479965 GRIN2BQ13224 1484 aa24.79■■□□□ 1.56
CCDC88B-207ENST00000479965 MAGI3Q5TCQ9 1506 aa24.77■■□□□ 1.56
CCDC88B-207ENST00000479965 MIA2Q96PC5 1412 aa24.77■■□□□ 1.56
CCDC88B-207ENST00000479965 LRRIQ1Q96JM4 1722 aa24.76■■□□□ 1.55
CCDC88B-207ENST00000479965 CRBNQ96SW2 442 aa24.76■■□□□ 1.55
CCDC88B-207ENST00000479965 GCC2Q8IWJ2 1684 aa24.76■■□□□ 1.55
CCDC88B-207ENST00000479965 CARD11Q9BXL7 1154 aa24.75■■□□□ 1.55
CCDC88B-207ENST00000479965 MYBBP1AQ9BQG0 1328 aaKnown RBP24.74■■□□□ 1.55
CCDC88B-207ENST00000479965 ZNF644Q9H582 1327 aaPredicted RBP24.74■■□□□ 1.55
CCDC88B-207ENST00000479965 ABCA5Q8WWZ7 1642 aa24.74■■□□□ 1.55
CCDC88B-207ENST00000479965 KDM2AQ9Y2K7 1162 aa24.73■■□□□ 1.55
CCDC88B-207ENST00000479965 CTTNBP2Q8WZ74 1663 aa24.73■■□□□ 1.55
CCDC88B-207ENST00000479965 KIF15Q9NS87 1388 aa24.73■■□□□ 1.55
CCDC88B-207ENST00000479965 TCOF1Q13428 1488 aaKnown RBP24.72■■□□□ 1.55
CCDC88B-207ENST00000479965 TDRD9Q8NDG6 1382 aaKnown RBP24.71■■□□□ 1.55
CCDC88B-207ENST00000479965 FANCD2Q9BXW9 1451 aa24.71■■□□□ 1.55
CCDC88B-207ENST00000479965 POLA1P09884 1462 aaPredicted RBP24.71■■□□□ 1.55
CCDC88B-207ENST00000479965 ABCA10Q8WWZ4 1543 aa24.7■■□□□ 1.54
CCDC88B-207ENST00000479965 LRPPRCP42704 1394 aaKnown RBP24.69■■□□□ 1.54
CCDC88B-207ENST00000479965 ST20-MTHFSA0A0A6YYL1 179 aa24.69■■□□□ 1.54
CCDC88B-207ENST00000479965 BCORL1Q5H9F3 1711 aa24.68■■□□□ 1.54
CCDC88B-207ENST00000479965 FRAT2O75474 233 aaPredicted RBP24.68■■□□□ 1.54
CCDC88B-207ENST00000479965 BRD4O60885 1362 aaPredicted RBP24.68■■□□□ 1.54
CCDC88B-207ENST00000479965 RALBP1Q15311 655 aa24.67■■□□□ 1.54
CCDC88B-207ENST00000479965 PKD2Q13563 968 aa24.66■■□□□ 1.54
CCDC88B-207ENST00000479965 PRDM2Q13029 1718 aa24.65■■□□□ 1.54
CCDC88B-207ENST00000479965 ROCK2O75116 1388 aaKnown RBP24.65■■□□□ 1.54
CCDC88B-207ENST00000479965 ARHGEF11O15085 1522 aa24.64■■□□□ 1.54
CCDC88B-207ENST00000479965 PDE3BQ13370 1112 aa24.64■■□□□ 1.53
CCDC88B-207ENST00000479965 C20orf194Q5TEA3 1177 aa24.64■■□□□ 1.53
CCDC88B-207ENST00000479965 ARID4BQ4LE39 1312 aaPredicted RBP24.63■■□□□ 1.53
CCDC88B-207ENST00000479965 POLR1AO95602 1720 aaPredicted RBP24.63■■□□□ 1.53
CCDC88B-207ENST00000479965 CUL7Q14999 1698 aa24.62■■□□□ 1.53
CCDC88B-207ENST00000479965 RGS3P49796 1198 aa24.61■■□□□ 1.53
CCDC88B-207ENST00000479965 NLRP13Q86W25 1043 aa24.61■■□□□ 1.53
CCDC88B-207ENST00000479965 CC2D2AQ9P2K1 1620 aa24.61■■□□□ 1.53
CCDC88B-207ENST00000479965 DAPK1P53355 1430 aa24.61■■□□□ 1.53
CCDC88B-207ENST00000479965 CDK13Q14004 1512 aaKnown RBP24.6■■□□□ 1.53
CCDC88B-207ENST00000479965 SAMD9Q5K651 1589 aa24.59■■□□□ 1.53
CCDC88B-207ENST00000479965 ZNF777Q9ULD5 760 aaPredicted RBP24.59■■□□□ 1.53
CCDC88B-207ENST00000479965 CC2D1BQ5T0F9 858 aaKnown RBP24.59■■□□□ 1.53
CCDC88B-207ENST00000479965 TOPBP1Q92547 1522 aa24.58■■□□□ 1.53
CCDC88B-207ENST00000479965 THOC2Q8NI27 1593 aaKnown RBP24.57■■□□□ 1.52
CCDC88B-207ENST00000479965 ABCC5O15440 1437 aa24.57■■□□□ 1.52
CCDC88B-207ENST00000479965 DCAF11Q8TEB1 546 aa24.57■■□□□ 1.52
CCDC88B-207ENST00000479965 EPRSP07814 1512 aaKnown RBP24.55■■□□□ 1.52
CCDC88B-207ENST00000479965 FAM161AQ3B820 660 aa24.55■■□□□ 1.52
CCDC88B-207ENST00000479965 ROCK1Q13464 1354 aa24.54■■□□□ 1.52
CCDC88B-207ENST00000479965 KTN1Q86UP2 1357 aaKnown RBP24.53■■□□□ 1.52
CCDC88B-207ENST00000479965 DNMBPQ6XZF7 1577 aa24.53■■□□□ 1.52
CCDC88B-207ENST00000479965 ARXQ96QS3 562 aa24.52■■□□□ 1.52
CCDC88B-207ENST00000479965 RSPH6AQ9H0K4 717 aa24.52■■□□□ 1.52
CCDC88B-207ENST00000479965 C8orf34Q49A92 452 aa24.49■■□□□ 1.51
CCDC88B-207ENST00000479965 FAM43AQ8N2R8 423 aa24.49■■□□□ 1.51
CCDC88B-207ENST00000479965 PZPP20742 1482 aa24.49■■□□□ 1.51
CCDC88B-207ENST00000479965 KDM5CP41229 1560 aa24.49■■□□□ 1.51
CCDC88B-207ENST00000479965 CENPQQ7L2Z9 268 aaPredicted RBP24.48■■□□□ 1.51
CCDC88B-207ENST00000479965 KIAA1107Q9UPP5 1409 aa24.48■■□□□ 1.51
CCDC88B-207ENST00000479965 MBD5Q9P267 1494 aa24.47■■□□□ 1.51
CCDC88B-207ENST00000479965 KDM2BQ8NHM5 1336 aa24.44■■□□□ 1.5
CCDC88B-207ENST00000479965 GAPVD1Q14C86 1478 aa24.44■■□□□ 1.5
CCDC88B-207ENST00000479965 POGKQ9P215 609 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms