RNA–Protein interactions for RNA: ENST00000478596.5

USP11-207, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 970 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-207ENST00000478596 RAPGEF6Q8TEU7 1601 aa24.61■■□□□ 1.53
USP11-207ENST00000478596 IQSEC2Q5JU85 1478 aa24.61■■□□□ 1.53
USP11-207ENST00000478596 UHRF1BP1Q6BDS2 1440 aa24.58■■□□□ 1.53
USP11-207ENST00000478596 NUP153P49790 1475 aaKnown RBP24.58■■□□□ 1.52
USP11-207ENST00000478596 CEBPAP49715 358 aaPredicted RBP24.56■■□□□ 1.52
USP11-207ENST00000478596 HECW1Q76N89 1606 aa24.56■■□□□ 1.52
USP11-207ENST00000478596 LTBP4Q8N2S1 1624 aa24.56■■□□□ 1.52
USP11-207ENST00000478596 PLEKHD1A6NEE1 506 aa24.54■■□□□ 1.52
USP11-207ENST00000478596 ATP10AO60312 1499 aa24.53■■□□□ 1.52
USP11-207ENST00000478596 SAMD9Q5K651 1589 aa24.53■■□□□ 1.52
USP11-207ENST00000478596 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.52■■□□□ 1.52
USP11-207ENST00000478596 C9orf84Q5VXU9 1444 aa24.52■■□□□ 1.52
USP11-207ENST00000478596 SCAPERQ9BY12 1400 aa24.47■■□□□ 1.51
USP11-207ENST00000478596 SETD1BQ9UPS6 1966 aaKnown RBP24.43■■□□□ 1.5
USP11-207ENST00000478596 PLCH2O75038 1416 aa24.4■■□□□ 1.5
USP11-207ENST00000478596 NCOA1Q15788 1441 aa24.38■■□□□ 1.49
USP11-207ENST00000478596 TRAPPC8Q9Y2L5 1435 aa24.34■■□□□ 1.49
USP11-207ENST00000478596 UBAP1LF5GYI3 381 aa24.33■■□□□ 1.49
USP11-207ENST00000478596 EFCAB2Q5VUJ9 269 aa24.29■■□□□ 1.48
USP11-207ENST00000478596 ZNF518AQ6AHZ1 1483 aa24.29■■□□□ 1.48
USP11-207ENST00000478596 C3P01024 1663 aa24.29■■□□□ 1.48
USP11-207ENST00000478596 REREQ9P2R6 1566 aa24.29■■□□□ 1.48
USP11-207ENST00000478596 KDM5CP41229 1560 aa24.25■■□□□ 1.47
USP11-207ENST00000478596 ZNF335Q9H4Z2 1342 aaPredicted RBP24.24■■□□□ 1.47
USP11-207ENST00000478596 MED1Q15648 1581 aaPredicted RBP24.22■■□□□ 1.47
USP11-207ENST00000478596 DIP2CQ9Y2E4 1556 aa24.22■■□□□ 1.47
USP11-207ENST00000478596 AGLP35573 1532 aa24.22■■□□□ 1.47
USP11-207ENST00000478596 AFAP1Q8N556 730 aa24.22■■□□□ 1.47
USP11-207ENST00000478596 ESF1Q9H501 851 aaKnown RBP24.22■■□□□ 1.47
USP11-207ENST00000478596 CAMSAP1Q5T5Y3 1602 aa24.21■■□□□ 1.47
USP11-207ENST00000478596 CNTLNQ9NXG0 1405 aa24.19■■□□□ 1.46
USP11-207ENST00000478596 CDK13Q14004 1512 aaKnown RBP24.19■■□□□ 1.46
USP11-207ENST00000478596 NPATQ14207 1427 aa24.18■■□□□ 1.46
USP11-207ENST00000478596 MLH3Q9UHC1 1453 aa24.16■■□□□ 1.46
USP11-207ENST00000478596 NCKAP5LQ9HCH0 1330 aa24.15■■□□□ 1.46
USP11-207ENST00000478596 RANGAP1P46060 587 aaPredicted RBP24.15■■□□□ 1.46
USP11-207ENST00000478596 MYO5CQ9NQX4 1742 aa24.15■■□□□ 1.46
USP11-207ENST00000478596 HSPA1LP34931 641 aa24.14■■□□□ 1.45
USP11-207ENST00000478596 CSRNP3Q8WYN3 585 aa24.14■■□□□ 1.45
USP11-207ENST00000478596 PKD2Q13563 968 aa24.13■■□□□ 1.45
USP11-207ENST00000478596 MYT1LQ9UL68 1186 aa24.13■■□□□ 1.45
USP11-207ENST00000478596 ABCA6Q8N139 1617 aa24.12■■□□□ 1.45
USP11-207ENST00000478596 PLA2R1Q13018 1463 aa24.11■■□□□ 1.45
USP11-207ENST00000478596 TCOF1Q13428 1488 aaKnown RBP24.08■■□□□ 1.45
USP11-207ENST00000478596 ARHGAP5Q13017 1502 aa24.08■■□□□ 1.45
USP11-207ENST00000478596 ZMYM3Q14202 1370 aa24.04■■□□□ 1.44
USP11-207ENST00000478596 CDK11AQ9UQ88 783 aaPredicted RBP24.04■■□□□ 1.44
USP11-207ENST00000478596 MROH2AA6NES4 1674 aa24.04■■□□□ 1.44
USP11-207ENST00000478596 TOM1O60784 492 aa24.03■■□□□ 1.44
USP11-207ENST00000478596 PHF23Q9BUL5 403 aaPredicted RBP24.03■■□□□ 1.44
USP11-207ENST00000478596 KIF14Q15058 1648 aa24.02■■□□□ 1.44
USP11-207ENST00000478596 SCAF1Q9H7N4 1312 aaKnown RBP24.02■■□□□ 1.44
USP11-207ENST00000478596 PIP4K2BP78356 416 aa24.01■■□□□ 1.43
USP11-207ENST00000478596 PPP6R1Q9UPN7 881 aa24.01■■□□□ 1.43
USP11-207ENST00000478596 ZNF142P52746 1687 aaPredicted RBP24■■□□□ 1.43
USP11-207ENST00000478596 TROQ12816 1431 aaPredicted RBP23.99■■□□□ 1.43
USP11-207ENST00000478596 CEP170BQ9Y4F5 1589 aaPredicted RBP23.96■■□□□ 1.43
USP11-207ENST00000478596 MYO3AQ8NEV4 1616 aa23.95■■□□□ 1.43
USP11-207ENST00000478596 CPS1P31327 1500 aa23.95■■□□□ 1.43
USP11-207ENST00000478596 ABCC1P33527 1531 aa23.95■■□□□ 1.43
USP11-207ENST00000478596 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
USP11-207ENST00000478596 CLIP1P30622 1438 aa23.93■■□□□ 1.42
USP11-207ENST00000478596 KIDINS220Q9ULH0 1771 aa23.93■■□□□ 1.42
USP11-207ENST00000478596 PTPRKQ15262 1439 aa23.93■■□□□ 1.42
USP11-207ENST00000478596 FMN1Q68DA7 1419 aa23.92■■□□□ 1.42
USP11-207ENST00000478596 ATP1B4Q9UN42 357 aaPredicted RBP23.91■■□□□ 1.42
USP11-207ENST00000478596 CDC42BPBQ9Y5S2 1711 aa23.9■■□□□ 1.42
USP11-207ENST00000478596 EEA1Q15075 1411 aa23.88■■□□□ 1.41
USP11-207ENST00000478596 ITSN2Q9NZM3 1697 aa23.88■■□□□ 1.41
USP11-207ENST00000478596 SHANK2Q9UPX8 1470 aa23.87■■□□□ 1.41
USP11-207ENST00000478596 PREX2Q70Z35 1606 aa23.85■■□□□ 1.41
USP11-207ENST00000478596 SUPT6HQ7KZ85 1726 aaKnown RBP23.85■■□□□ 1.41
USP11-207ENST00000478596 A2ML1A8K2U0 1454 aa23.83■■□□□ 1.41
USP11-207ENST00000478596 ALKQ9UM73 1620 aa23.83■■□□□ 1.41
USP11-207ENST00000478596 CLTCQ00610 1675 aaKnown RBP23.82■■□□□ 1.4
USP11-207ENST00000478596 SAMD9LQ8IVG5 1584 aa23.82■■□□□ 1.4
USP11-207ENST00000478596 DNMT1P26358 1616 aaKnown RBP23.79■■□□□ 1.4
USP11-207ENST00000478596 NEURL4Q96JN8 1562 aa23.78■■□□□ 1.4
USP11-207ENST00000478596 RGS17Q9UGC6 210 aaPredicted RBP23.78■■□□□ 1.4
USP11-207ENST00000478596 PLXNC1O60486 1568 aa23.78■■□□□ 1.4
USP11-207ENST00000478596 SPAG9O60271 1321 aaKnown RBP23.76■■□□□ 1.39
USP11-207ENST00000478596 VWDEQ8N2E2 1590 aa23.74■■□□□ 1.39
USP11-207ENST00000478596 A2MP01023 1474 aa23.73■■□□□ 1.39
USP11-207ENST00000478596 ARHGAP35Q9NRY4 1499 aa23.73■■□□□ 1.39
USP11-207ENST00000478596 POLR1AO95602 1720 aaPredicted RBP23.73■■□□□ 1.39
USP11-207ENST00000478596 GGT6Q6P531 493 aa23.72■■□□□ 1.39
USP11-207ENST00000478596 ATP7AQ04656 1500 aa23.7■■□□□ 1.38
USP11-207ENST00000478596 ANKLE2Q86XL3 938 aa23.68■■□□□ 1.38
USP11-207ENST00000478596 SYCP2Q9BX26 1530 aa23.68■■□□□ 1.38
USP11-207ENST00000478596 LRRIQ1Q96JM4 1722 aa23.67■■□□□ 1.38
USP11-207ENST00000478596 INO80Q9ULG1 1556 aaPredicted RBP23.66■■□□□ 1.38
USP11-207ENST00000478596 CDC42BPAQ5VT25 1732 aa23.66■■□□□ 1.38
USP11-207ENST00000478596 MED14O60244 1454 aa23.66■■□□□ 1.38
USP11-207ENST00000478596 KIAA1107Q9UPP5 1409 aa23.65■■□□□ 1.38
USP11-207ENST00000478596 TNRQ92752 1358 aa23.65■■□□□ 1.38
USP11-207ENST00000478596 HNRNPMP52272 730 aaKnown RBP eCLIP23.64■■□□□ 1.37
USP11-207ENST00000478596 ZNF777Q9ULD5 760 aaPredicted RBP23.64■■□□□ 1.37
USP11-207ENST00000478596 NPHP4O75161 1426 aaPredicted RBP23.63■■□□□ 1.37
USP11-207ENST00000478596 SENP3Q9H4L4 574 aaPredicted RBP23.62■■□□□ 1.37
USP11-207ENST00000478596 LRRC7Q96NW7 1537 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms