RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SRCAPQ6ZRS2 3230 aa8.78□□□□□ -1
USP4-209ENST00000475873 RAPGEF2Q9Y4G8 1499 aa8.77□□□□□ -1
USP4-209ENST00000475873 RGS17Q9UGC6 210 aaPredicted RBP8.77□□□□□ -1.01
USP4-209ENST00000475873 MAGI2Q86UL8 1455 aa8.76□□□□□ -1.01
USP4-209ENST00000475873 ALKQ9UM73 1620 aa8.76□□□□□ -1.01
USP4-209ENST00000475873 C3P01024 1663 aa8.75□□□□□ -1.01
USP4-209ENST00000475873 GOLGA3Q08378 1498 aa8.74□□□□□ -1.01
USP4-209ENST00000475873 CTTNBP2Q8WZ74 1663 aa8.74□□□□□ -1.01
USP4-209ENST00000475873 CAMSAP1Q5T5Y3 1602 aa8.73□□□□□ -1.01
USP4-209ENST00000475873 C9orf84Q5VXU9 1444 aa8.73□□□□□ -1.01
USP4-209ENST00000475873 ATP10AO60312 1499 aa8.73□□□□□ -1.01
USP4-209ENST00000475873 PHF23Q9BUL5 403 aaPredicted RBP8.73□□□□□ -1.01
USP4-209ENST00000475873 PIP4K2BP78356 416 aa8.72□□□□□ -1.01
USP4-209ENST00000475873 NCKAP5LQ9HCH0 1330 aa8.72□□□□□ -1.01
USP4-209ENST00000475873 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.71□□□□□ -1.01
USP4-209ENST00000475873 SUPT5HO00267 1087 aaKnown RBP8.71□□□□□ -1.02
USP4-209ENST00000475873 CFAP74Q9C0B2 1584 aa8.7□□□□□ -1.02
USP4-209ENST00000475873 TRAPPC8Q9Y2L5 1435 aa8.7□□□□□ -1.02
USP4-209ENST00000475873 NUP153P49790 1475 aaKnown RBP8.7□□□□□ -1.02
USP4-209ENST00000475873 SCAF1Q9H7N4 1312 aaKnown RBP8.69□□□□□ -1.02
USP4-209ENST00000475873 SCAPERQ9BY12 1400 aa8.69□□□□□ -1.02
USP4-209ENST00000475873 P3H3Q8IVL6 736 aa8.68□□□□□ -1.02
USP4-209ENST00000475873 TCOF1Q13428 1488 aaKnown RBP8.68□□□□□ -1.02
USP4-209ENST00000475873 RAPGEF6Q8TEU7 1601 aa8.68□□□□□ -1.02
USP4-209ENST00000475873 SETD1AO15047 1707 aaKnown RBP8.67□□□□□ -1.02
USP4-209ENST00000475873 DIP2CQ9Y2E4 1556 aa8.66□□□□□ -1.02
USP4-209ENST00000475873 POTEAQ6S8J7 498 aa8.66□□□□□ -1.02
USP4-209ENST00000475873 PLA2R1Q13018 1463 aa8.64□□□□□ -1.03
USP4-209ENST00000475873 KDM5CP41229 1560 aa8.64□□□□□ -1.03
USP4-209ENST00000475873 REREQ9P2R6 1566 aa8.64□□□□□ -1.03
USP4-209ENST00000475873 ZNF142P52746 1687 aaPredicted RBP8.63□□□□□ -1.03
USP4-209ENST00000475873 ABCA6Q8N139 1617 aa8.63□□□□□ -1.03
USP4-209ENST00000475873 SENP3Q9H4L4 574 aaPredicted RBP8.63□□□□□ -1.03
USP4-209ENST00000475873 SAMD9Q5K651 1589 aa8.62□□□□□ -1.03
USP4-209ENST00000475873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.62□□□□□ -1.03
USP4-209ENST00000475873 TOM1O60784 492 aa8.62□□□□□ -1.03
USP4-209ENST00000475873 HNRNPUL2Q1KMD3 747 aaKnown RBP8.62□□□□□ -1.03
USP4-209ENST00000475873 AGLP35573 1532 aa8.62□□□□□ -1.03
USP4-209ENST00000475873 PLCH2O75038 1416 aa8.62□□□□□ -1.03
USP4-209ENST00000475873 NPATQ14207 1427 aa8.62□□□□□ -1.03
USP4-209ENST00000475873 PKD2Q13563 968 aa8.61□□□□□ -1.03
USP4-209ENST00000475873 MYO3AQ8NEV4 1616 aa8.61□□□□□ -1.03
USP4-209ENST00000475873 NEURL4Q96JN8 1562 aa8.61□□□□□ -1.03
USP4-209ENST00000475873 CPS1P31327 1500 aa8.6□□□□□ -1.03
USP4-209ENST00000475873 SHANK2Q9UPX8 1470 aa8.6□□□□□ -1.03
USP4-209ENST00000475873 AFAP1Q8N556 730 aa8.6□□□□□ -1.03
USP4-209ENST00000475873 PPP6R1Q9UPN7 881 aa8.6□□□□□ -1.03
USP4-209ENST00000475873 CEP170BQ9Y4F5 1589 aaPredicted RBP8.6□□□□□ -1.03
USP4-209ENST00000475873 PRXQ9BXM0 1461 aa8.59□□□□□ -1.03
USP4-209ENST00000475873 VWDEQ8N2E2 1590 aa8.59□□□□□ -1.03
USP4-209ENST00000475873 ZNF518AQ6AHZ1 1483 aa8.58□□□□□ -1.04
USP4-209ENST00000475873 PLEKHD1A6NEE1 506 aa8.58□□□□□ -1.04
USP4-209ENST00000475873 MROH2AA6NES4 1674 aa8.58□□□□□ -1.04
USP4-209ENST00000475873 SUPT6HQ7KZ85 1726 aaKnown RBP8.57□□□□□ -1.04
USP4-209ENST00000475873 CNTLNQ9NXG0 1405 aa8.57□□□□□ -1.04
USP4-209ENST00000475873 ZMYM3Q14202 1370 aa8.57□□□□□ -1.04
USP4-209ENST00000475873 PTPRKQ15262 1439 aa8.56□□□□□ -1.04
USP4-209ENST00000475873 STRCP1A6NGW2 1772 aa8.56□□□□□ -1.04
USP4-209ENST00000475873 CDK13Q14004 1512 aaKnown RBP8.56□□□□□ -1.04
USP4-209ENST00000475873 UPF1Q92900 1129 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP4-209ENST00000475873 MLH3Q9UHC1 1453 aa8.55□□□□□ -1.04
USP4-209ENST00000475873 MYO5CQ9NQX4 1742 aa8.54□□□□□ -1.04
USP4-209ENST00000475873 DNMT1P26358 1616 aaKnown RBP8.54□□□□□ -1.04
USP4-209ENST00000475873 KIDINS220Q9ULH0 1771 aa8.53□□□□□ -1.04
USP4-209ENST00000475873 EFCAB2Q5VUJ9 269 aa8.53□□□□□ -1.04
USP4-209ENST00000475873 POLR1AO95602 1720 aaPredicted RBP8.53□□□□□ -1.04
USP4-209ENST00000475873 KIF14Q15058 1648 aa8.52□□□□□ -1.05
USP4-209ENST00000475873 ESF1Q9H501 851 aaKnown RBP8.52□□□□□ -1.05
USP4-209ENST00000475873 LRRC7Q96NW7 1537 aa8.52□□□□□ -1.05
USP4-209ENST00000475873 CLTCQ00610 1675 aaKnown RBP8.52□□□□□ -1.05
USP4-209ENST00000475873 RNF17Q9BXT8 1623 aaKnown RBP8.51□□□□□ -1.05
USP4-209ENST00000475873 A2ML1A8K2U0 1454 aa8.51□□□□□ -1.05
USP4-209ENST00000475873 ARHGAP5Q13017 1502 aa8.49□□□□□ -1.05
USP4-209ENST00000475873 FAM9AQ8IZU1 332 aaPredicted RBP8.48□□□□□ -1.05
USP4-209ENST00000475873 MYT1LQ9UL68 1186 aa8.48□□□□□ -1.05
USP4-209ENST00000475873 CDC42BPBQ9Y5S2 1711 aa8.48□□□□□ -1.05
USP4-209ENST00000475873 ABCC1P33527 1531 aa8.48□□□□□ -1.05
USP4-209ENST00000475873 XIRP1Q702N8 1843 aaKnown RBP8.47□□□□□ -1.05
USP4-209ENST00000475873 ITSN2Q9NZM3 1697 aa8.46□□□□□ -1.05
USP4-209ENST00000475873 MED14O60244 1454 aa8.46□□□□□ -1.05
USP4-209ENST00000475873 PLXNC1O60486 1568 aa8.46□□□□□ -1.06
USP4-209ENST00000475873 SYNMO15061 1565 aa8.45□□□□□ -1.06
USP4-209ENST00000475873 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP4-209ENST00000475873 NPHP4O75161 1426 aaPredicted RBP8.45□□□□□ -1.06
USP4-209ENST00000475873 SAMD9LQ8IVG5 1584 aa8.44□□□□□ -1.06
USP4-209ENST00000475873 RANGAP1P46060 587 aaPredicted RBP8.44□□□□□ -1.06
USP4-209ENST00000475873 DEPDC5O75140 1603 aa8.43□□□□□ -1.06
USP4-209ENST00000475873 FAM135BQ49AJ0 1406 aa8.43□□□□□ -1.06
USP4-209ENST00000475873 IQGAP1P46940 1657 aa8.43□□□□□ -1.06
USP4-209ENST00000475873 FBXO31Q5XUX0 539 aaPredicted RBP8.42□□□□□ -1.06
USP4-209ENST00000475873 LRP6O75581 1613 aa8.42□□□□□ -1.06
USP4-209ENST00000475873 ZC3H13Q5T200 1668 aaKnown RBP8.41□□□□□ -1.06
USP4-209ENST00000475873 PREX2Q70Z35 1606 aa8.41□□□□□ -1.06
USP4-209ENST00000475873 TRIM52Q96A61 297 aa8.41□□□□□ -1.06
USP4-209ENST00000475873 ROBO1Q9Y6N7 1651 aa8.4□□□□□ -1.06
USP4-209ENST00000475873 SETBP1Q9Y6X0 1596 aa8.4□□□□□ -1.06
USP4-209ENST00000475873 TROQ12816 1431 aaPredicted RBP8.4□□□□□ -1.06
USP4-209ENST00000475873 TNRQ92752 1358 aa8.4□□□□□ -1.06
USP4-209ENST00000475873 ANKLE2Q86XL3 938 aa8.4□□□□□ -1.06
USP4-209ENST00000475873 GGT6Q6P531 493 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms