RNA–Protein interactions for RNA: ENST00000475657.1

FAM3A-218, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 585 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-218ENST00000475657 FER1L4A9Z1Z3 1794 aa23.72■■□□□ 1.39
FAM3A-218ENST00000475657 HECW1Q76N89 1606 aa23.71■■□□□ 1.39
FAM3A-218ENST00000475657 CSRNP3Q8WYN3 585 aa23.71■■□□□ 1.39
FAM3A-218ENST00000475657 ATP10AO60312 1499 aa23.69■■□□□ 1.38
FAM3A-218ENST00000475657 SCAPERQ9BY12 1400 aa23.69■■□□□ 1.38
FAM3A-218ENST00000475657 PREX1Q8TCU6 1659 aa23.68■■□□□ 1.38
FAM3A-218ENST00000475657 PLCH2O75038 1416 aa23.67■■□□□ 1.38
FAM3A-218ENST00000475657 C9orf84Q5VXU9 1444 aa23.66■■□□□ 1.38
FAM3A-218ENST00000475657 CEBPAP49715 358 aaPredicted RBP23.64■■□□□ 1.37
FAM3A-218ENST00000475657 STRCQ7RTU9 1775 aa23.63■■□□□ 1.37
FAM3A-218ENST00000475657 SETD1BQ9UPS6 1966 aaKnown RBP23.61■■□□□ 1.37
FAM3A-218ENST00000475657 PTPRTO14522 1441 aa23.61■■□□□ 1.37
FAM3A-218ENST00000475657 UHRF1BP1Q6BDS2 1440 aa23.61■■□□□ 1.37
FAM3A-218ENST00000475657 EFCAB2Q5VUJ9 269 aa23.59■■□□□ 1.37
FAM3A-218ENST00000475657 SPATA31D1Q6ZQQ2 1576 aa23.59■■□□□ 1.37
FAM3A-218ENST00000475657 RANGAP1P46060 587 aaPredicted RBP23.56■■□□□ 1.36
FAM3A-218ENST00000475657 IQSEC2Q5JU85 1478 aa23.55■■□□□ 1.36
FAM3A-218ENST00000475657 ZNF518AQ6AHZ1 1483 aa23.52■■□□□ 1.36
FAM3A-218ENST00000475657 CDK13Q14004 1512 aaKnown RBP23.49■■□□□ 1.35
FAM3A-218ENST00000475657 LTBP4Q8N2S1 1624 aa23.49■■□□□ 1.35
FAM3A-218ENST00000475657 EEA1Q15075 1411 aa23.49■■□□□ 1.35
FAM3A-218ENST00000475657 AFAP1Q8N556 730 aa23.47■■□□□ 1.35
FAM3A-218ENST00000475657 KDM5CP41229 1560 aa23.47■■□□□ 1.35
FAM3A-218ENST00000475657 REREQ9P2R6 1566 aa23.47■■□□□ 1.35
FAM3A-218ENST00000475657 CDK11AQ9UQ88 783 aaPredicted RBP23.46■■□□□ 1.35
FAM3A-218ENST00000475657 TRAPPC8Q9Y2L5 1435 aa23.46■■□□□ 1.35
FAM3A-218ENST00000475657 MYO5CQ9NQX4 1742 aa23.43■■□□□ 1.34
FAM3A-218ENST00000475657 NCOA1Q15788 1441 aa23.42■■□□□ 1.34
FAM3A-218ENST00000475657 ESF1Q9H501 851 aaKnown RBP23.41■■□□□ 1.34
FAM3A-218ENST00000475657 AGLP35573 1532 aa23.41■■□□□ 1.34
FAM3A-218ENST00000475657 MLH3Q9UHC1 1453 aa23.41■■□□□ 1.34
FAM3A-218ENST00000475657 DIP2CQ9Y2E4 1556 aa23.4■■□□□ 1.34
FAM3A-218ENST00000475657 C3P01024 1663 aa23.39■■□□□ 1.34
FAM3A-218ENST00000475657 MYT1LQ9UL68 1186 aa23.39■■□□□ 1.33
FAM3A-218ENST00000475657 CNTLNQ9NXG0 1405 aa23.37■■□□□ 1.33
FAM3A-218ENST00000475657 FMN1Q68DA7 1419 aa23.36■■□□□ 1.33
FAM3A-218ENST00000475657 ARHGAP5Q13017 1502 aa23.36■■□□□ 1.33
FAM3A-218ENST00000475657 TROQ12816 1431 aaPredicted RBP23.35■■□□□ 1.33
FAM3A-218ENST00000475657 KIF14Q15058 1648 aa23.33■■□□□ 1.32
FAM3A-218ENST00000475657 ATP1B4Q9UN42 357 aaPredicted RBP23.32■■□□□ 1.32
FAM3A-218ENST00000475657 NPATQ14207 1427 aa23.32■■□□□ 1.32
FAM3A-218ENST00000475657 ABCA6Q8N139 1617 aa23.31■■□□□ 1.32
FAM3A-218ENST00000475657 CLIP1P30622 1438 aa23.31■■□□□ 1.32
FAM3A-218ENST00000475657 UBAP1LF5GYI3 381 aa23.29■■□□□ 1.32
FAM3A-218ENST00000475657 CAMSAP1Q5T5Y3 1602 aa23.27■■□□□ 1.32
FAM3A-218ENST00000475657 ZNF335Q9H4Z2 1342 aaPredicted RBP23.25■■□□□ 1.31
FAM3A-218ENST00000475657 PKD2Q13563 968 aa23.24■■□□□ 1.31
FAM3A-218ENST00000475657 NCKAP5LQ9HCH0 1330 aa23.23■■□□□ 1.31
FAM3A-218ENST00000475657 ZMYM3Q14202 1370 aa23.23■■□□□ 1.31
FAM3A-218ENST00000475657 ABCC1P33527 1531 aa23.23■■□□□ 1.31
FAM3A-218ENST00000475657 PLA2R1Q13018 1463 aa23.21■■□□□ 1.31
FAM3A-218ENST00000475657 CDC42BPBQ9Y5S2 1711 aa23.21■■□□□ 1.31
FAM3A-218ENST00000475657 MROH2AA6NES4 1674 aa23.2■■□□□ 1.3
FAM3A-218ENST00000475657 ARHGAP35Q9NRY4 1499 aa23.2■■□□□ 1.3
FAM3A-218ENST00000475657 KIDINS220Q9ULH0 1771 aa23.18■■□□□ 1.3
FAM3A-218ENST00000475657 TCOF1Q13428 1488 aaKnown RBP23.17■■□□□ 1.3
FAM3A-218ENST00000475657 PREX2Q70Z35 1606 aa23.16■■□□□ 1.3
FAM3A-218ENST00000475657 UBTFP17480 764 aaKnown RBP23.15■■□□□ 1.3
FAM3A-218ENST00000475657 ITSN2Q9NZM3 1697 aa23.15■■□□□ 1.3
FAM3A-218ENST00000475657 PPP6R1Q9UPN7 881 aa23.11■■□□□ 1.29
FAM3A-218ENST00000475657 ZNF142P52746 1687 aaPredicted RBP23.1■■□□□ 1.29
FAM3A-218ENST00000475657 PTPRKQ15262 1439 aa23.1■■□□□ 1.29
FAM3A-218ENST00000475657 SAMD9LQ8IVG5 1584 aa23.1■■□□□ 1.29
FAM3A-218ENST00000475657 SPAG9O60271 1321 aaKnown RBP23.08■■□□□ 1.29
FAM3A-218ENST00000475657 HSPA1LP34931 641 aa23.08■■□□□ 1.29
FAM3A-218ENST00000475657 CEP170BQ9Y4F5 1589 aaPredicted RBP23.08■■□□□ 1.29
FAM3A-218ENST00000475657 TOM1O60784 492 aa23.07■■□□□ 1.28
FAM3A-218ENST00000475657 MYO3AQ8NEV4 1616 aa23.07■■□□□ 1.28
FAM3A-218ENST00000475657 LRRIQ1Q96JM4 1722 aa23.06■■□□□ 1.28
FAM3A-218ENST00000475657 MED1Q15648 1581 aaPredicted RBP23.06■■□□□ 1.28
FAM3A-218ENST00000475657 CCDC18Q5T9S5 1454 aa23.05■■□□□ 1.28
FAM3A-218ENST00000475657 CASKIN1Q8WXD9 1431 aa23.02■■□□□ 1.28
FAM3A-218ENST00000475657 PLXNC1O60486 1568 aa23.01■■□□□ 1.27
FAM3A-218ENST00000475657 KIAA1107Q9UPP5 1409 aa23.01■■□□□ 1.27
FAM3A-218ENST00000475657 CLTCQ00610 1675 aaKnown RBP23.01■■□□□ 1.27
FAM3A-218ENST00000475657 A2MP01023 1474 aa23.01■■□□□ 1.27
FAM3A-218ENST00000475657 CDC42BPAQ5VT25 1732 aa23.01■■□□□ 1.27
FAM3A-218ENST00000475657 CPS1P31327 1500 aa23.01■■□□□ 1.27
FAM3A-218ENST00000475657 ZNF777Q9ULD5 760 aaPredicted RBP23■■□□□ 1.27
FAM3A-218ENST00000475657 SUPT6HQ7KZ85 1726 aaKnown RBP22.99■■□□□ 1.27
FAM3A-218ENST00000475657 A2ML1A8K2U0 1454 aa22.99■■□□□ 1.27
FAM3A-218ENST00000475657 HNRNPMP52272 730 aaKnown RBP eCLIP22.99■■□□□ 1.27
FAM3A-218ENST00000475657 PIP4K2BP78356 416 aa22.99■■□□□ 1.27
FAM3A-218ENST00000475657 GGT6Q6P531 493 aa22.99■■□□□ 1.27
FAM3A-218ENST00000475657 SCAF1Q9H7N4 1312 aaKnown RBP22.99■■□□□ 1.27
FAM3A-218ENST00000475657 ATP7AQ04656 1500 aa22.98■■□□□ 1.27
FAM3A-218ENST00000475657 SYCP2Q9BX26 1530 aa22.98■■□□□ 1.27
FAM3A-218ENST00000475657 GPATCH8Q9UKJ3 1502 aaKnown RBP22.98■■□□□ 1.27
FAM3A-218ENST00000475657 EHMT2Q96KQ7 1210 aa22.97■■□□□ 1.27
FAM3A-218ENST00000475657 PLEKHH2Q8IVE3 1493 aa22.97■■□□□ 1.27
FAM3A-218ENST00000475657 SHANK2Q9UPX8 1470 aa22.95■■□□□ 1.26
FAM3A-218ENST00000475657 DNMT1P26358 1616 aaKnown RBP22.93■■□□□ 1.26
FAM3A-218ENST00000475657 INO80Q9ULG1 1556 aaPredicted RBP22.93■■□□□ 1.26
FAM3A-218ENST00000475657 PHF23Q9BUL5 403 aaPredicted RBP22.92■■□□□ 1.26
FAM3A-218ENST00000475657 CFDP1Q9UEE9 299 aaPredicted RBP22.91■■□□□ 1.26
FAM3A-218ENST00000475657 NEURL4Q96JN8 1562 aa22.88■■□□□ 1.25
FAM3A-218ENST00000475657 ANKLE2Q86XL3 938 aa22.87■■□□□ 1.25
FAM3A-218ENST00000475657 FYCO1Q9BQS8 1478 aa22.86■■□□□ 1.25
FAM3A-218ENST00000475657 TNRQ92752 1358 aa22.86■■□□□ 1.25
FAM3A-218ENST00000475657 THEMISQ8N1K5 641 aaPredicted RBP22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms