RNA–Protein interactions for RNA: ENST00000475339.1

ATG9A-220, Transcript of autophagy related 9A, humanhuman

TSL 2

Gene ATG9A, Length 812 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG9A-220ENST00000475339 UHRF1BP1Q6BDS2 1440 aa24.17■■□□□ 1.46
ATG9A-220ENST00000475339 LTBP4Q8N2S1 1624 aa24.16■■□□□ 1.46
ATG9A-220ENST00000475339 HECW1Q76N89 1606 aa24.15■■□□□ 1.46
ATG9A-220ENST00000475339 PLEKHD1A6NEE1 506 aa24.15■■□□□ 1.46
ATG9A-220ENST00000475339 NUP153P49790 1475 aaKnown RBP24.14■■□□□ 1.46
ATG9A-220ENST00000475339 PRXQ9BXM0 1461 aa24.13■■□□□ 1.45
ATG9A-220ENST00000475339 CFAP74Q9C0B2 1584 aa24.13■■□□□ 1.45
ATG9A-220ENST00000475339 ATP10AO60312 1499 aa24.1■■□□□ 1.45
ATG9A-220ENST00000475339 IQSEC2Q5JU85 1478 aa24.1■■□□□ 1.45
ATG9A-220ENST00000475339 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.1■■□□□ 1.45
ATG9A-220ENST00000475339 SETD1BQ9UPS6 1966 aaKnown RBP24.08■■□□□ 1.45
ATG9A-220ENST00000475339 SCAPERQ9BY12 1400 aa24.08■■□□□ 1.44
ATG9A-220ENST00000475339 C9orf84Q5VXU9 1444 aa24.07■■□□□ 1.44
ATG9A-220ENST00000475339 SAMD9Q5K651 1589 aa24.04■■□□□ 1.44
ATG9A-220ENST00000475339 UBAP1LF5GYI3 381 aa24.03■■□□□ 1.44
ATG9A-220ENST00000475339 NCOA1Q15788 1441 aa23.96■■□□□ 1.43
ATG9A-220ENST00000475339 RANGAP1P46060 587 aaPredicted RBP23.96■■□□□ 1.43
ATG9A-220ENST00000475339 PLCH2O75038 1416 aa23.95■■□□□ 1.42
ATG9A-220ENST00000475339 ZNF335Q9H4Z2 1342 aaPredicted RBP23.93■■□□□ 1.42
ATG9A-220ENST00000475339 TRAPPC8Q9Y2L5 1435 aa23.92■■□□□ 1.42
ATG9A-220ENST00000475339 C3P01024 1663 aa23.91■■□□□ 1.42
ATG9A-220ENST00000475339 EFCAB2Q5VUJ9 269 aa23.89■■□□□ 1.41
ATG9A-220ENST00000475339 AFAP1Q8N556 730 aa23.89■■□□□ 1.41
ATG9A-220ENST00000475339 ESF1Q9H501 851 aaKnown RBP23.88■■□□□ 1.41
ATG9A-220ENST00000475339 MYT1LQ9UL68 1186 aa23.88■■□□□ 1.41
ATG9A-220ENST00000475339 NCKAP5LQ9HCH0 1330 aa23.86■■□□□ 1.41
ATG9A-220ENST00000475339 MED1Q15648 1581 aaPredicted RBP23.86■■□□□ 1.41
ATG9A-220ENST00000475339 HSPA1LP34931 641 aa23.85■■□□□ 1.41
ATG9A-220ENST00000475339 CAMSAP1Q5T5Y3 1602 aa23.84■■□□□ 1.41
ATG9A-220ENST00000475339 ZNF518AQ6AHZ1 1483 aa23.83■■□□□ 1.41
ATG9A-220ENST00000475339 CDK13Q14004 1512 aaKnown RBP23.82■■□□□ 1.4
ATG9A-220ENST00000475339 SCAF1Q9H7N4 1312 aaKnown RBP23.81■■□□□ 1.4
ATG9A-220ENST00000475339 DIP2CQ9Y2E4 1556 aa23.8■■□□□ 1.4
ATG9A-220ENST00000475339 KDM5CP41229 1560 aa23.78■■□□□ 1.4
ATG9A-220ENST00000475339 PIP4K2BP78356 416 aa23.77■■□□□ 1.4
ATG9A-220ENST00000475339 REREQ9P2R6 1566 aa23.76■■□□□ 1.39
ATG9A-220ENST00000475339 PHF23Q9BUL5 403 aaPredicted RBP23.75■■□□□ 1.39
ATG9A-220ENST00000475339 CSRNP3Q8WYN3 585 aa23.74■■□□□ 1.39
ATG9A-220ENST00000475339 AGLP35573 1532 aa23.73■■□□□ 1.39
ATG9A-220ENST00000475339 MYO5CQ9NQX4 1742 aa23.73■■□□□ 1.39
ATG9A-220ENST00000475339 CNTLNQ9NXG0 1405 aa23.72■■□□□ 1.39
ATG9A-220ENST00000475339 ABCA6Q8N139 1617 aa23.72■■□□□ 1.39
ATG9A-220ENST00000475339 PKD2Q13563 968 aa23.71■■□□□ 1.39
ATG9A-220ENST00000475339 NPATQ14207 1427 aa23.7■■□□□ 1.38
ATG9A-220ENST00000475339 ARHGAP5Q13017 1502 aa23.69■■□□□ 1.38
ATG9A-220ENST00000475339 MLH3Q9UHC1 1453 aa23.69■■□□□ 1.38
ATG9A-220ENST00000475339 ATP1B4Q9UN42 357 aaPredicted RBP23.67■■□□□ 1.38
ATG9A-220ENST00000475339 ZMYM3Q14202 1370 aa23.66■■□□□ 1.38
ATG9A-220ENST00000475339 TOM1O60784 492 aa23.66■■□□□ 1.38
ATG9A-220ENST00000475339 PPP6R1Q9UPN7 881 aa23.66■■□□□ 1.38
ATG9A-220ENST00000475339 KIF14Q15058 1648 aa23.65■■□□□ 1.38
ATG9A-220ENST00000475339 PLA2R1Q13018 1463 aa23.64■■□□□ 1.38
ATG9A-220ENST00000475339 TCOF1Q13428 1488 aaKnown RBP23.63■■□□□ 1.37
ATG9A-220ENST00000475339 CDK11AQ9UQ88 783 aaPredicted RBP23.61■■□□□ 1.37
ATG9A-220ENST00000475339 MROH2AA6NES4 1674 aa23.56■■□□□ 1.36
ATG9A-220ENST00000475339 CEP170BQ9Y4F5 1589 aaPredicted RBP23.56■■□□□ 1.36
ATG9A-220ENST00000475339 TROQ12816 1431 aaPredicted RBP23.55■■□□□ 1.36
ATG9A-220ENST00000475339 MYO3AQ8NEV4 1616 aa23.55■■□□□ 1.36
ATG9A-220ENST00000475339 ZNF142P52746 1687 aaPredicted RBP23.54■■□□□ 1.36
ATG9A-220ENST00000475339 KIDINS220Q9ULH0 1771 aa23.53■■□□□ 1.36
ATG9A-220ENST00000475339 SENP3Q9H4L4 574 aaPredicted RBP23.53■■□□□ 1.36
ATG9A-220ENST00000475339 SUPT6HQ7KZ85 1726 aaKnown RBP23.52■■□□□ 1.36
ATG9A-220ENST00000475339 PTPRKQ15262 1439 aa23.51■■□□□ 1.35
ATG9A-220ENST00000475339 ABCC1P33527 1531 aa23.51■■□□□ 1.35
ATG9A-220ENST00000475339 CDC42BPBQ9Y5S2 1711 aa23.5■■□□□ 1.35
ATG9A-220ENST00000475339 CPS1P31327 1500 aa23.5■■□□□ 1.35
ATG9A-220ENST00000475339 RGS17Q9UGC6 210 aaPredicted RBP23.49■■□□□ 1.35
ATG9A-220ENST00000475339 CLIP1P30622 1438 aa23.49■■□□□ 1.35
ATG9A-220ENST00000475339 SHANK2Q9UPX8 1470 aa23.49■■□□□ 1.35
ATG9A-220ENST00000475339 CLTCQ00610 1675 aaKnown RBP23.46■■□□□ 1.35
ATG9A-220ENST00000475339 ITSN2Q9NZM3 1697 aa23.46■■□□□ 1.35
ATG9A-220ENST00000475339 ALKQ9UM73 1620 aa23.44■■□□□ 1.34
ATG9A-220ENST00000475339 FMN1Q68DA7 1419 aa23.44■■□□□ 1.34
ATG9A-220ENST00000475339 GGT6Q6P531 493 aa23.42■■□□□ 1.34
ATG9A-220ENST00000475339 A2ML1A8K2U0 1454 aa23.41■■□□□ 1.34
ATG9A-220ENST00000475339 PREX2Q70Z35 1606 aa23.41■■□□□ 1.34
ATG9A-220ENST00000475339 DNMT1P26358 1616 aaKnown RBP23.4■■□□□ 1.34
ATG9A-220ENST00000475339 SAMD9LQ8IVG5 1584 aa23.4■■□□□ 1.34
ATG9A-220ENST00000475339 SPAG9O60271 1321 aaKnown RBP23.39■■□□□ 1.34
ATG9A-220ENST00000475339 NEURL4Q96JN8 1562 aa23.39■■□□□ 1.33
ATG9A-220ENST00000475339 ZNF777Q9ULD5 760 aaPredicted RBP23.37■■□□□ 1.33
ATG9A-220ENST00000475339 VWDEQ8N2E2 1590 aa23.35■■□□□ 1.33
ATG9A-220ENST00000475339 EEA1Q15075 1411 aa23.34■■□□□ 1.33
ATG9A-220ENST00000475339 HNRNPMP52272 730 aaKnown RBP eCLIP23.33■■□□□ 1.33
ATG9A-220ENST00000475339 POLR1AO95602 1720 aaPredicted RBP23.33■■□□□ 1.32
ATG9A-220ENST00000475339 A2MP01023 1474 aa23.32■■□□□ 1.32
ATG9A-220ENST00000475339 ARHGAP35Q9NRY4 1499 aa23.31■■□□□ 1.32
ATG9A-220ENST00000475339 ANKLE2Q86XL3 938 aa23.31■■□□□ 1.32
ATG9A-220ENST00000475339 PLXNC1O60486 1568 aa23.31■■□□□ 1.32
ATG9A-220ENST00000475339 POTEAQ6S8J7 498 aa23.3■■□□□ 1.32
ATG9A-220ENST00000475339 LRRIQ1Q96JM4 1722 aa23.3■■□□□ 1.32
ATG9A-220ENST00000475339 FBXO31Q5XUX0 539 aaPredicted RBP23.29■■□□□ 1.32
ATG9A-220ENST00000475339 EHMT2Q96KQ7 1210 aa23.29■■□□□ 1.32
ATG9A-220ENST00000475339 SYCP2Q9BX26 1530 aa23.28■■□□□ 1.32
ATG9A-220ENST00000475339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.28■■□□□ 1.32
ATG9A-220ENST00000475339 ATP7AQ04656 1500 aa23.28■■□□□ 1.32
ATG9A-220ENST00000475339 CDC42BPAQ5VT25 1732 aa23.26■■□□□ 1.31
ATG9A-220ENST00000475339 TNRQ92752 1358 aa23.26■■□□□ 1.31
ATG9A-220ENST00000475339 UBTFP17480 764 aaKnown RBP23.25■■□□□ 1.31
ATG9A-220ENST00000475339 NPHP4O75161 1426 aaPredicted RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms