RNA–Protein interactions for RNA: ENST00000467366.1

PTPRE-206, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 338 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-206ENST00000467366 UBAP1LF5GYI3 381 aa11.3□□□□□ -0.6
PTPRE-206ENST00000467366 MAGI2Q86UL8 1455 aa11.3□□□□□ -0.6
PTPRE-206ENST00000467366 C3P01024 1663 aa11.27□□□□□ -0.6
PTPRE-206ENST00000467366 SETD1BQ9UPS6 1966 aaKnown RBP11.27□□□□□ -0.61
PTPRE-206ENST00000467366 RAPGEF6Q8TEU7 1601 aa11.27□□□□□ -0.61
PTPRE-206ENST00000467366 NCOA1Q15788 1441 aa11.26□□□□□ -0.61
PTPRE-206ENST00000467366 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.25□□□□□ -0.61
PTPRE-206ENST00000467366 HNRNPUL2Q1KMD3 747 aaKnown RBP11.25□□□□□ -0.61
PTPRE-206ENST00000467366 P3H3Q8IVL6 736 aa11.25□□□□□ -0.61
PTPRE-206ENST00000467366 C9orf84Q5VXU9 1444 aa11.25□□□□□ -0.61
PTPRE-206ENST00000467366 ATP10AO60312 1499 aa11.25□□□□□ -0.61
PTPRE-206ENST00000467366 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.25□□□□□ -0.61
PTPRE-206ENST00000467366 HSPA1LP34931 641 aa11.24□□□□□ -0.61
PTPRE-206ENST00000467366 ZNF335Q9H4Z2 1342 aaPredicted RBP11.24□□□□□ -0.61
PTPRE-206ENST00000467366 MYT1Q01538 1121 aa11.22□□□□□ -0.61
PTPRE-206ENST00000467366 CAMSAP1Q5T5Y3 1602 aa11.21□□□□□ -0.61
PTPRE-206ENST00000467366 NUP153P49790 1475 aaKnown RBP11.21□□□□□ -0.61
PTPRE-206ENST00000467366 SCAPERQ9BY12 1400 aa11.2□□□□□ -0.62
PTPRE-206ENST00000467366 FAM9AQ8IZU1 332 aaPredicted RBP11.2□□□□□ -0.62
PTPRE-206ENST00000467366 SCAF1Q9H7N4 1312 aaKnown RBP11.19□□□□□ -0.62
PTPRE-206ENST00000467366 PHF23Q9BUL5 403 aaPredicted RBP11.19□□□□□ -0.62
PTPRE-206ENST00000467366 SAMD9Q5K651 1589 aa11.18□□□□□ -0.62
PTPRE-206ENST00000467366 TRAPPC8Q9Y2L5 1435 aa11.18□□□□□ -0.62
PTPRE-206ENST00000467366 NCKAP5LQ9HCH0 1330 aa11.17□□□□□ -0.62
PTPRE-206ENST00000467366 PIP4K2BP78356 416 aa11.17□□□□□ -0.62
PTPRE-206ENST00000467366 PLEKHD1A6NEE1 506 aa11.16□□□□□ -0.62
PTPRE-206ENST00000467366 DIP2CQ9Y2E4 1556 aa11.15□□□□□ -0.62
PTPRE-206ENST00000467366 SUPT6HQ7KZ85 1726 aaKnown RBP11.14□□□□□ -0.63
PTPRE-206ENST00000467366 REREQ9P2R6 1566 aa11.13□□□□□ -0.63
PTPRE-206ENST00000467366 PLCH2O75038 1416 aa11.13□□□□□ -0.63
PTPRE-206ENST00000467366 ABCA6Q8N139 1617 aa11.12□□□□□ -0.63
PTPRE-206ENST00000467366 PRXQ9BXM0 1461 aa11.12□□□□□ -0.63
PTPRE-206ENST00000467366 KDM5CP41229 1560 aa11.11□□□□□ -0.63
PTPRE-206ENST00000467366 ZNF142P52746 1687 aaPredicted RBP11.11□□□□□ -0.63
PTPRE-206ENST00000467366 AGLP35573 1532 aa11.1□□□□□ -0.63
PTPRE-206ENST00000467366 ALKQ9UM73 1620 aa11.1□□□□□ -0.63
PTPRE-206ENST00000467366 MYO5CQ9NQX4 1742 aa11.1□□□□□ -0.63
PTPRE-206ENST00000467366 RGS17Q9UGC6 210 aaPredicted RBP11.1□□□□□ -0.63
PTPRE-206ENST00000467366 TCOF1Q13428 1488 aaKnown RBP11.1□□□□□ -0.63
PTPRE-206ENST00000467366 ZNF518AQ6AHZ1 1483 aa11.1□□□□□ -0.63
PTPRE-206ENST00000467366 PLA2R1Q13018 1463 aa11.09□□□□□ -0.63
PTPRE-206ENST00000467366 TOM1O60784 492 aa11.09□□□□□ -0.63
PTPRE-206ENST00000467366 ESF1Q9H501 851 aaKnown RBP11.09□□□□□ -0.63
PTPRE-206ENST00000467366 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
PTPRE-206ENST00000467366 MROH2AA6NES4 1674 aa11.08□□□□□ -0.64
PTPRE-206ENST00000467366 PKD2Q13563 968 aa11.08□□□□□ -0.64
PTPRE-206ENST00000467366 AFAP1Q8N556 730 aa11.08□□□□□ -0.64
PTPRE-206ENST00000467366 NPATQ14207 1427 aa11.07□□□□□ -0.64
PTPRE-206ENST00000467366 CDK13Q14004 1512 aaKnown RBP11.06□□□□□ -0.64
PTPRE-206ENST00000467366 MYT1LQ9UL68 1186 aa11.06□□□□□ -0.64
PTPRE-206ENST00000467366 PPP6R1Q9UPN7 881 aa11.06□□□□□ -0.64
PTPRE-206ENST00000467366 CNTLNQ9NXG0 1405 aa11.06□□□□□ -0.64
PTPRE-206ENST00000467366 CEP170BQ9Y4F5 1589 aaPredicted RBP11.06□□□□□ -0.64
PTPRE-206ENST00000467366 CPS1P31327 1500 aa11.05□□□□□ -0.64
PTPRE-206ENST00000467366 EFCAB2Q5VUJ9 269 aa11.05□□□□□ -0.64
PTPRE-206ENST00000467366 PELP1Q8IZL8 1130 aaKnown RBP11.05□□□□□ -0.64
PTPRE-206ENST00000467366 SENP3Q9H4L4 574 aaPredicted RBP11.05□□□□□ -0.64
PTPRE-206ENST00000467366 MLH3Q9UHC1 1453 aa11.03□□□□□ -0.64
PTPRE-206ENST00000467366 SETD1AO15047 1707 aaKnown RBP11.03□□□□□ -0.64
PTPRE-206ENST00000467366 ZMYM3Q14202 1370 aa11.03□□□□□ -0.64
PTPRE-206ENST00000467366 KIF14Q15058 1648 aa11.02□□□□□ -0.64
PTPRE-206ENST00000467366 CLTCQ00610 1675 aaKnown RBP11.02□□□□□ -0.64
PTPRE-206ENST00000467366 SHANK2Q9UPX8 1470 aa11.02□□□□□ -0.65
PTPRE-206ENST00000467366 POLR1AO95602 1720 aaPredicted RBP11.02□□□□□ -0.65
PTPRE-206ENST00000467366 PTPRKQ15262 1439 aa11.01□□□□□ -0.65
PTPRE-206ENST00000467366 KIDINS220Q9ULH0 1771 aa11.01□□□□□ -0.65
PTPRE-206ENST00000467366 POTEAQ6S8J7 498 aa11.01□□□□□ -0.65
PTPRE-206ENST00000467366 NEURL4Q96JN8 1562 aa11.01□□□□□ -0.65
PTPRE-206ENST00000467366 ARHGAP5Q13017 1502 aa11□□□□□ -0.65
PTPRE-206ENST00000467366 RANGAP1P46060 587 aaPredicted RBP11□□□□□ -0.65
PTPRE-206ENST00000467366 DNMT1P26358 1616 aaKnown RBP10.99□□□□□ -0.65
PTPRE-206ENST00000467366 CDC42BPBQ9Y5S2 1711 aa10.99□□□□□ -0.65
PTPRE-206ENST00000467366 VWDEQ8N2E2 1590 aa10.99□□□□□ -0.65
PTPRE-206ENST00000467366 ITSN2Q9NZM3 1697 aa10.98□□□□□ -0.65
PTPRE-206ENST00000467366 STRCP1A6NGW2 1772 aa10.95□□□□□ -0.66
PTPRE-206ENST00000467366 ABCC1P33527 1531 aa10.95□□□□□ -0.66
PTPRE-206ENST00000467366 A2ML1A8K2U0 1454 aa10.95□□□□□ -0.66
PTPRE-206ENST00000467366 RNF17Q9BXT8 1623 aaKnown RBP10.94□□□□□ -0.66
PTPRE-206ENST00000467366 PREX2Q70Z35 1606 aa10.91□□□□□ -0.66
PTPRE-206ENST00000467366 LRRC7Q96NW7 1537 aa10.91□□□□□ -0.66
PTPRE-206ENST00000467366 SAMD9LQ8IVG5 1584 aa10.9□□□□□ -0.66
PTPRE-206ENST00000467366 UPF1Q92900 1129 aaKnown RBP eCLIP10.89□□□□□ -0.67
PTPRE-206ENST00000467366 SYNMO15061 1565 aa10.89□□□□□ -0.67
PTPRE-206ENST00000467366 LRRIQ1Q96JM4 1722 aa10.89□□□□□ -0.67
PTPRE-206ENST00000467366 PLXNC1O60486 1568 aa10.88□□□□□ -0.67
PTPRE-206ENST00000467366 SLC24A1O60721 1099 aa10.88□□□□□ -0.67
PTPRE-206ENST00000467366 TROQ12816 1431 aaPredicted RBP10.88□□□□□ -0.67
PTPRE-206ENST00000467366 ATP1B4Q9UN42 357 aaPredicted RBP10.88□□□□□ -0.67
PTPRE-206ENST00000467366 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.88□□□□□ -0.67
PTPRE-206ENST00000467366 DEPDC5O75140 1603 aa10.87□□□□□ -0.67
PTPRE-206ENST00000467366 IQGAP1P46940 1657 aa10.87□□□□□ -0.67
PTPRE-206ENST00000467366 MED14O60244 1454 aa10.87□□□□□ -0.67
PTPRE-206ENST00000467366 XIRP1Q702N8 1843 aaKnown RBP10.86□□□□□ -0.67
PTPRE-206ENST00000467366 NPHP4O75161 1426 aaPredicted RBP10.86□□□□□ -0.67
PTPRE-206ENST00000467366 GGT6Q6P531 493 aa10.86□□□□□ -0.67
PTPRE-206ENST00000467366 CDC42BPAQ5VT25 1732 aa10.86□□□□□ -0.67
PTPRE-206ENST00000467366 ANKLE2Q86XL3 938 aa10.85□□□□□ -0.67
PTPRE-206ENST00000467366 CSRNP3Q8WYN3 585 aa10.85□□□□□ -0.67
PTPRE-206ENST00000467366 CDK11AQ9UQ88 783 aaPredicted RBP10.85□□□□□ -0.67
PTPRE-206ENST00000467366 ATP7AQ04656 1500 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms