RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 EHBP1L1Q8N3D4 1523 aa14.02□□□□□ -0.16
PTPRE-205ENST00000463727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.02□□□□□ -0.17
PTPRE-205ENST00000463727 DAXXQ9UER7 740 aaPredicted RBP14.01□□□□□ -0.17
PTPRE-205ENST00000463727 PTPRKQ15262 1439 aa14□□□□□ -0.17
PTPRE-205ENST00000463727 ZNF644Q9H582 1327 aaPredicted RBP14□□□□□ -0.17
PTPRE-205ENST00000463727 CCDC7Q96M83 1385 aa13.99□□□□□ -0.17
PTPRE-205ENST00000463727 PBRM1Q86U86 1689 aa13.99□□□□□ -0.17
PTPRE-205ENST00000463727 ZNF608Q9ULD9 1512 aaPredicted RBP13.99□□□□□ -0.17
PTPRE-205ENST00000463727 WDR62O43379 1518 aa13.99□□□□□ -0.17
PTPRE-205ENST00000463727 CNTLNQ9NXG0 1405 aa13.99□□□□□ -0.17
PTPRE-205ENST00000463727 RGL3Q3MIN7 710 aa13.98□□□□□ -0.17
PTPRE-205ENST00000463727 SUPT6HQ7KZ85 1726 aaKnown RBP13.98□□□□□ -0.17
PTPRE-205ENST00000463727 CFAP43Q8NDM7 1665 aa13.98□□□□□ -0.17
PTPRE-205ENST00000463727 IFT140Q96RY7 1462 aa13.97□□□□□ -0.17
PTPRE-205ENST00000463727 ZBED9Q6R2W3 1325 aa13.97□□□□□ -0.17
PTPRE-205ENST00000463727 DCAF11Q8TEB1 546 aa13.97□□□□□ -0.17
PTPRE-205ENST00000463727 ANKRD30AQ9BXX3 1397 aa13.96□□□□□ -0.17
PTPRE-205ENST00000463727 MIA2Q96PC5 1412 aa13.96□□□□□ -0.17
PTPRE-205ENST00000463727 NPM2Q86SE8 214 aaKnown RBP13.96□□□□□ -0.17
PTPRE-205ENST00000463727 PTPN23Q9H3S7 1636 aa13.96□□□□□ -0.17
PTPRE-205ENST00000463727 GRIN2BQ13224 1484 aa13.96□□□□□ -0.18
PTPRE-205ENST00000463727 KIF7Q2M1P5 1343 aa13.95□□□□□ -0.18
PTPRE-205ENST00000463727 NUP155O75694 1391 aa13.95□□□□□ -0.18
PTPRE-205ENST00000463727 NBPF8Q3BBV2 869 aa13.94□□□□□ -0.18
PTPRE-205ENST00000463727 NBR1Q14596 966 aa13.93□□□□□ -0.18
PTPRE-205ENST00000463727 CCDC184Q52MB2 194 aa13.93□□□□□ -0.18
PTPRE-205ENST00000463727 ZBTB47Q9UFB7 747 aaPredicted RBP13.93□□□□□ -0.18
PTPRE-205ENST00000463727 ADAMTS12P58397 1594 aa13.93□□□□□ -0.18
PTPRE-205ENST00000463727 CARMIL2Q6F5E8 1435 aa13.92□□□□□ -0.18
PTPRE-205ENST00000463727 SNAPC4Q5SXM2 1469 aa13.92□□□□□ -0.18
PTPRE-205ENST00000463727 EPRSP07814 1512 aaKnown RBP13.92□□□□□ -0.18
PTPRE-205ENST00000463727 NUDCQ9Y266 331 aa13.92□□□□□ -0.18
PTPRE-205ENST00000463727 USP47Q96K76 1375 aa13.9□□□□□ -0.18
PTPRE-205ENST00000463727 SAMD9Q5K651 1589 aa13.9□□□□□ -0.18
PTPRE-205ENST00000463727 HECW1Q76N89 1606 aa13.9□□□□□ -0.18
PTPRE-205ENST00000463727 THOC2Q8NI27 1593 aaKnown RBP13.9□□□□□ -0.19
PTPRE-205ENST00000463727 JPH4Q96JJ6 628 aa13.89□□□□□ -0.19
PTPRE-205ENST00000463727 C11orf95C9JLR9 678 aaPredicted RBP13.89□□□□□ -0.19
PTPRE-205ENST00000463727 CDK13Q14004 1512 aaKnown RBP13.89□□□□□ -0.19
PTPRE-205ENST00000463727 FANCIQ9NVI1 1328 aa13.89□□□□□ -0.19
PTPRE-205ENST00000463727 EIF4G3O43432 1585 aaKnown RBP13.88□□□□□ -0.19
PTPRE-205ENST00000463727 ROCK2O75116 1388 aaKnown RBP13.87□□□□□ -0.19
PTPRE-205ENST00000463727 NOP58Q9Y2X3 529 aaKnown RBP13.87□□□□□ -0.19
PTPRE-205ENST00000463727 DAPK1P53355 1430 aa13.86□□□□□ -0.19
PTPRE-205ENST00000463727 IQGAP2Q13576 1575 aa13.86□□□□□ -0.19
PTPRE-205ENST00000463727 ST20-MTHFSA0A0A6YYL1 179 aa13.86□□□□□ -0.19
PTPRE-205ENST00000463727 RALBP1Q15311 655 aa13.85□□□□□ -0.19
PTPRE-205ENST00000463727 ANKRD30BQ9BXX2 1392 aa13.85□□□□□ -0.19
PTPRE-205ENST00000463727 HNRNPMP52272 730 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTPRE-205ENST00000463727 UGGT2Q9NYU1 1516 aa13.85□□□□□ -0.19
PTPRE-205ENST00000463727 ROCK1Q13464 1354 aa13.85□□□□□ -0.19
PTPRE-205ENST00000463727 WDR43Q15061 677 aaKnown RBP eCLIP13.84□□□□□ -0.19
PTPRE-205ENST00000463727 CC2D1BQ5T0F9 858 aaKnown RBP13.84□□□□□ -0.19
PTPRE-205ENST00000463727 AKNAQ7Z591 1439 aa13.83□□□□□ -0.2
PTPRE-205ENST00000463727 KIF15Q9NS87 1388 aa13.82□□□□□ -0.2
PTPRE-205ENST00000463727 BCL11AQ9H165 835 aa13.82□□□□□ -0.2
PTPRE-205ENST00000463727 NCOA1Q15788 1441 aa13.81□□□□□ -0.2
PTPRE-205ENST00000463727 ANKRD50Q9ULJ7 1429 aa13.81□□□□□ -0.2
PTPRE-205ENST00000463727 ARID4BQ4LE39 1312 aaPredicted RBP13.81□□□□□ -0.2
PTPRE-205ENST00000463727 KTN1Q86UP2 1357 aaKnown RBP13.81□□□□□ -0.2
PTPRE-205ENST00000463727 ABCC5O15440 1437 aa13.81□□□□□ -0.2
PTPRE-205ENST00000463727 GRIN2AQ12879 1464 aa13.8□□□□□ -0.2
PTPRE-205ENST00000463727 PRG4Q92954 1404 aaPredicted RBP13.8□□□□□ -0.2
PTPRE-205ENST00000463727 LRRIQ1Q96JM4 1722 aa13.8□□□□□ -0.2
PTPRE-205ENST00000463727 NLRP13Q86W25 1043 aa13.8□□□□□ -0.2
PTPRE-205ENST00000463727 RCAN3Q9UKA8 241 aa13.8□□□□□ -0.2
PTPRE-205ENST00000463727 RPRD2Q5VT52 1461 aaKnown RBP13.8□□□□□ -0.2
PTPRE-205ENST00000463727 MYBBP1AQ9BQG0 1328 aaKnown RBP13.79□□□□□ -0.2
PTPRE-205ENST00000463727 TMF1P82094 1093 aa13.79□□□□□ -0.2
PTPRE-205ENST00000463727 TROQ12816 1431 aaPredicted RBP13.79□□□□□ -0.2
PTPRE-205ENST00000463727 KNSTRNQ9Y448 316 aa13.79□□□□□ -0.2
PTPRE-205ENST00000463727 KIAA1107Q9UPP5 1409 aa13.79□□□□□ -0.2
PTPRE-205ENST00000463727 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.78□□□□□ -0.2
PTPRE-205ENST00000463727 KIAA0586Q9BVV6 1533 aa13.78□□□□□ -0.2
PTPRE-205ENST00000463727 TCOF1Q13428 1488 aaKnown RBP13.78□□□□□ -0.2
PTPRE-205ENST00000463727 CANXP27824 592 aaKnown RBP13.77□□□□□ -0.21
PTPRE-205ENST00000463727 RSPH4AQ5TD94 716 aa13.77□□□□□ -0.21
PTPRE-205ENST00000463727 MAGI1Q96QZ7 1491 aaPredicted RBP13.77□□□□□ -0.21
PTPRE-205ENST00000463727 CDCA8Q53HL2 280 aa13.75□□□□□ -0.21
PTPRE-205ENST00000463727 SYNJ2O15056 1496 aa13.74□□□□□ -0.21
PTPRE-205ENST00000463727 PDE3BQ13370 1112 aa13.74□□□□□ -0.21
PTPRE-205ENST00000463727 PNISRQ8TF01 805 aaKnown RBP13.73□□□□□ -0.21
PTPRE-205ENST00000463727 CCDC144AA2RUR9 1427 aa13.73□□□□□ -0.21
PTPRE-205ENST00000463727 MSH5O43196 834 aa13.73□□□□□ -0.21
PTPRE-205ENST00000463727 DEKP35659 375 aaKnown RBP13.72□□□□□ -0.21
PTPRE-205ENST00000463727 DISP1Q96F81 1524 aa13.72□□□□□ -0.21
PTPRE-205ENST00000463727 IPO9Q96P70 1041 aaKnown RBP13.72□□□□□ -0.21
PTPRE-205ENST00000463727 CHGAP10645 457 aaKnown RBP13.71□□□□□ -0.21
PTPRE-205ENST00000463727 CEP170Q5SW79 1584 aa13.71□□□□□ -0.21
PTPRE-205ENST00000463727 MAGI3Q5TCQ9 1506 aa13.71□□□□□ -0.21
PTPRE-205ENST00000463727 KIAA0556O60303 1618 aa13.71□□□□□ -0.21
PTPRE-205ENST00000463727 TCERG1O14776 1098 aaKnown RBP13.71□□□□□ -0.21
PTPRE-205ENST00000463727 RRP1P56182 461 aaKnown RBP13.71□□□□□ -0.22
PTPRE-205ENST00000463727 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
PTPRE-205ENST00000463727 EXOC6Q8TAG9 804 aa13.7□□□□□ -0.22
PTPRE-205ENST00000463727 PTPRGP23470 1445 aa13.69□□□□□ -0.22
PTPRE-205ENST00000463727 CAMSAP2Q08AD1 1489 aa13.69□□□□□ -0.22
PTPRE-205ENST00000463727 BRD4O60885 1362 aaPredicted RBP13.69□□□□□ -0.22
PTPRE-205ENST00000463727 C9orf84Q5VXU9 1444 aa13.69□□□□□ -0.22
PTPRE-205ENST00000463727 PANK3Q9H999 370 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms