RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 EFCAB2Q5VUJ9 269 aa24.17■■□□□ 1.46
SMC1A-204ENST00000463684 HECW1Q76N89 1606 aa24.17■■□□□ 1.46
SMC1A-204ENST00000463684 CDK13Q14004 1512 aaKnown RBP24.15■■□□□ 1.46
SMC1A-204ENST00000463684 ATP10AO60312 1499 aa24.13■■□□□ 1.45
SMC1A-204ENST00000463684 CDK11AQ9UQ88 783 aaPredicted RBP24.13■■□□□ 1.45
SMC1A-204ENST00000463684 SIGLEC1Q9BZZ2 1709 aa24.12■■□□□ 1.45
SMC1A-204ENST00000463684 C9orf84Q5VXU9 1444 aa24.1■■□□□ 1.45
SMC1A-204ENST00000463684 FER1L4A9Z1Z3 1794 aa24.09■■□□□ 1.45
SMC1A-204ENST00000463684 CEBPAP49715 358 aaPredicted RBP24.09■■□□□ 1.45
SMC1A-204ENST00000463684 DMRT2Q9Y5R5 561 aa24.09■■□□□ 1.45
SMC1A-204ENST00000463684 MYT1LQ9UL68 1186 aa24.08■■□□□ 1.45
SMC1A-204ENST00000463684 ARHGEF12Q9NZN5 1544 aa24.07■■□□□ 1.44
SMC1A-204ENST00000463684 UBTFP17480 764 aaKnown RBP24.06■■□□□ 1.44
SMC1A-204ENST00000463684 FMN1Q68DA7 1419 aa24.05■■□□□ 1.44
SMC1A-204ENST00000463684 AFAP1Q8N556 730 aa24.03■■□□□ 1.44
SMC1A-204ENST00000463684 EHMT2Q96KQ7 1210 aa24.03■■□□□ 1.44
SMC1A-204ENST00000463684 ZNF518AQ6AHZ1 1483 aa24.01■■□□□ 1.43
SMC1A-204ENST00000463684 PREX1Q8TCU6 1659 aa23.99■■□□□ 1.43
SMC1A-204ENST00000463684 UHRF1BP1Q6BDS2 1440 aa23.99■■□□□ 1.43
SMC1A-204ENST00000463684 MYO5CQ9NQX4 1742 aa23.98■■□□□ 1.43
SMC1A-204ENST00000463684 ARHGAP5Q13017 1502 aa23.97■■□□□ 1.43
SMC1A-204ENST00000463684 ESF1Q9H501 851 aaKnown RBP23.97■■□□□ 1.43
SMC1A-204ENST00000463684 CLIP1P30622 1438 aa23.96■■□□□ 1.43
SMC1A-204ENST00000463684 TROQ12816 1431 aaPredicted RBP23.95■■□□□ 1.42
SMC1A-204ENST00000463684 KIF14Q15058 1648 aa23.94■■□□□ 1.42
SMC1A-204ENST00000463684 DISP3Q9P2K9 1392 aa23.92■■□□□ 1.42
SMC1A-204ENST00000463684 ARHGAP35Q9NRY4 1499 aa23.92■■□□□ 1.42
SMC1A-204ENST00000463684 KDM5CP41229 1560 aa23.91■■□□□ 1.42
SMC1A-204ENST00000463684 STRCQ7RTU9 1775 aa23.87■■□□□ 1.41
SMC1A-204ENST00000463684 MLH3Q9UHC1 1453 aa23.87■■□□□ 1.41
SMC1A-204ENST00000463684 PTPRTO14522 1441 aa23.86■■□□□ 1.41
SMC1A-204ENST00000463684 DIP2CQ9Y2E4 1556 aa23.86■■□□□ 1.41
SMC1A-204ENST00000463684 ILDR2Q71H61 639 aa23.85■■□□□ 1.41
SMC1A-204ENST00000463684 REREQ9P2R6 1566 aa23.85■■□□□ 1.41
SMC1A-204ENST00000463684 SETD1BQ9UPS6 1966 aaKnown RBP23.85■■□□□ 1.41
SMC1A-204ENST00000463684 TRAPPC8Q9Y2L5 1435 aa23.83■■□□□ 1.4
SMC1A-204ENST00000463684 SOCS7O14512 581 aa23.81■■□□□ 1.4
SMC1A-204ENST00000463684 AGLP35573 1532 aa23.8■■□□□ 1.4
SMC1A-204ENST00000463684 ABCA6Q8N139 1617 aa23.79■■□□□ 1.4
SMC1A-204ENST00000463684 CNTLNQ9NXG0 1405 aa23.78■■□□□ 1.4
SMC1A-204ENST00000463684 C3P01024 1663 aa23.77■■□□□ 1.4
SMC1A-204ENST00000463684 CDC42BPBQ9Y5S2 1711 aa23.76■■□□□ 1.39
SMC1A-204ENST00000463684 ABCC1P33527 1531 aa23.75■■□□□ 1.39
SMC1A-204ENST00000463684 CCDC18Q5T9S5 1454 aa23.74■■□□□ 1.39
SMC1A-204ENST00000463684 ZNF777Q9ULD5 760 aaPredicted RBP23.73■■□□□ 1.39
SMC1A-204ENST00000463684 PREX2Q70Z35 1606 aa23.73■■□□□ 1.39
SMC1A-204ENST00000463684 NCOA1Q15788 1441 aa23.72■■□□□ 1.39
SMC1A-204ENST00000463684 CASKIN1Q8WXD9 1431 aa23.71■■□□□ 1.39
SMC1A-204ENST00000463684 LRRIQ1Q96JM4 1722 aa23.7■■□□□ 1.39
SMC1A-204ENST00000463684 LTBP4Q8N2S1 1624 aa23.7■■□□□ 1.38
SMC1A-204ENST00000463684 IQSEC2Q5JU85 1478 aa23.69■■□□□ 1.38
SMC1A-204ENST00000463684 ITSN2Q9NZM3 1697 aa23.69■■□□□ 1.38
SMC1A-204ENST00000463684 NPATQ14207 1427 aa23.68■■□□□ 1.38
SMC1A-204ENST00000463684 ZMYM3Q14202 1370 aa23.68■■□□□ 1.38
SMC1A-204ENST00000463684 SPAG9O60271 1321 aaKnown RBP23.68■■□□□ 1.38
SMC1A-204ENST00000463684 KIDINS220Q9ULH0 1771 aa23.68■■□□□ 1.38
SMC1A-204ENST00000463684 NCKAP5LQ9HCH0 1330 aa23.65■■□□□ 1.38
SMC1A-204ENST00000463684 HNRNPMP52272 730 aaKnown RBP eCLIP23.65■■□□□ 1.38
SMC1A-204ENST00000463684 CHIC1Q5VXU3 224 aa23.65■■□□□ 1.38
SMC1A-204ENST00000463684 SPATA31D1Q6ZQQ2 1576 aa23.65■■□□□ 1.38
SMC1A-204ENST00000463684 CAMSAP1Q5T5Y3 1602 aa23.64■■□□□ 1.38
SMC1A-204ENST00000463684 SAMD9LQ8IVG5 1584 aa23.63■■□□□ 1.37
SMC1A-204ENST00000463684 UBAP1LF5GYI3 381 aa23.6■■□□□ 1.37
SMC1A-204ENST00000463684 PKD2Q13563 968 aa23.6■■□□□ 1.37
SMC1A-204ENST00000463684 CDC42BPAQ5VT25 1732 aa23.59■■□□□ 1.37
SMC1A-204ENST00000463684 GGT6Q6P531 493 aa23.59■■□□□ 1.37
SMC1A-204ENST00000463684 CFDP1Q9UEE9 299 aaPredicted RBP23.59■■□□□ 1.37
SMC1A-204ENST00000463684 MROH2AA6NES4 1674 aa23.59■■□□□ 1.37
SMC1A-204ENST00000463684 ZNF335Q9H4Z2 1342 aaPredicted RBP23.59■■□□□ 1.37
SMC1A-204ENST00000463684 SYCP2Q9BX26 1530 aa23.58■■□□□ 1.36
SMC1A-204ENST00000463684 GPATCH8Q9UKJ3 1502 aaKnown RBP23.58■■□□□ 1.36
SMC1A-204ENST00000463684 FYCO1Q9BQS8 1478 aa23.57■■□□□ 1.36
SMC1A-204ENST00000463684 KIAA1107Q9UPP5 1409 aa23.55■■□□□ 1.36
SMC1A-204ENST00000463684 PLEKHH2Q8IVE3 1493 aa23.55■■□□□ 1.36
SMC1A-204ENST00000463684 SUPT6HQ7KZ85 1726 aaKnown RBP23.54■■□□□ 1.36
SMC1A-204ENST00000463684 PPP6R1Q9UPN7 881 aa23.54■■□□□ 1.36
SMC1A-204ENST00000463684 A2MP01023 1474 aa23.54■■□□□ 1.36
SMC1A-204ENST00000463684 ATP7AQ04656 1500 aa23.53■■□□□ 1.36
SMC1A-204ENST00000463684 CCNB3Q8WWL7 1395 aa23.52■■□□□ 1.36
SMC1A-204ENST00000463684 PLA2R1Q13018 1463 aa23.52■■□□□ 1.36
SMC1A-204ENST00000463684 PTPRKQ15262 1439 aa23.51■■□□□ 1.35
SMC1A-204ENST00000463684 CLTCQ00610 1675 aaKnown RBP23.49■■□□□ 1.35
SMC1A-204ENST00000463684 TCOF1Q13428 1488 aaKnown RBP23.47■■□□□ 1.35
SMC1A-204ENST00000463684 PLXNC1O60486 1568 aa23.47■■□□□ 1.35
SMC1A-204ENST00000463684 CEP170BQ9Y4F5 1589 aaPredicted RBP23.47■■□□□ 1.35
SMC1A-204ENST00000463684 MYO3AQ8NEV4 1616 aa23.46■■□□□ 1.35
SMC1A-204ENST00000463684 INO80Q9ULG1 1556 aaPredicted RBP23.45■■□□□ 1.34
SMC1A-204ENST00000463684 MTUS2Q5JR59 1369 aa23.45■■□□□ 1.34
SMC1A-204ENST00000463684 ZNF142P52746 1687 aaPredicted RBP23.44■■□□□ 1.34
SMC1A-204ENST00000463684 SCAF1Q9H7N4 1312 aaKnown RBP23.41■■□□□ 1.34
SMC1A-204ENST00000463684 ZNF644Q9H582 1327 aaPredicted RBP23.4■■□□□ 1.34
SMC1A-204ENST00000463684 A2ML1A8K2U0 1454 aa23.4■■□□□ 1.34
SMC1A-204ENST00000463684 TOM1O60784 492 aa23.38■■□□□ 1.33
SMC1A-204ENST00000463684 DHX29Q7Z478 1369 aaKnown RBP23.38■■□□□ 1.33
SMC1A-204ENST00000463684 PIP4K2BP78356 416 aa23.37■■□□□ 1.33
SMC1A-204ENST00000463684 ADGBQ8N7X0 1667 aa23.37■■□□□ 1.33
SMC1A-204ENST00000463684 RTEL1-TNFRSF6BF6WH68 1400 aa23.36■■□□□ 1.33
SMC1A-204ENST00000463684 KIF3BO15066 747 aa23.35■■□□□ 1.33
SMC1A-204ENST00000463684 FBXO31Q5XUX0 539 aaPredicted RBP23.35■■□□□ 1.33
SMC1A-204ENST00000463684 HSPA1LP34931 641 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms