RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RNF123Q5XPI4 1314 aa15.72■□□□□ 0.11
CPSF3-202ENST00000460593 MYOM3Q5VTT5 1437 aa15.71■□□□□ 0.1
CPSF3-202ENST00000460593 NCAPD3P42695 1498 aa15.7■□□□□ 0.1
CPSF3-202ENST00000460593 RAD54L2Q9Y4B4 1467 aa15.69■□□□□ 0.1
CPSF3-202ENST00000460593 EIF5BO60841 1220 aaKnown RBP15.69■□□□□ 0.1
CPSF3-202ENST00000460593 TMC1Q8TDI8 760 aa15.68■□□□□ 0.1
CPSF3-202ENST00000460593 DHX29Q7Z478 1369 aaKnown RBP15.67■□□□□ 0.1
CPSF3-202ENST00000460593 PLIN1O60240 522 aa15.66■□□□□ 0.1
CPSF3-202ENST00000460593 PNISRQ8TF01 805 aaKnown RBP15.66■□□□□ 0.1
CPSF3-202ENST00000460593 RRP1P56182 461 aaKnown RBP15.65■□□□□ 0.1
CPSF3-202ENST00000460593 SNAPC4Q5SXM2 1469 aa15.65■□□□□ 0.1
CPSF3-202ENST00000460593 BACH2Q9BYV9 841 aa15.65■□□□□ 0.1
CPSF3-202ENST00000460593 SPATA31E1Q6ZUB1 1445 aa15.62■□□□□ 0.09
CPSF3-202ENST00000460593 SLC4A1APQ9BWU0 796 aaKnown RBP15.62■□□□□ 0.09
CPSF3-202ENST00000460593 TCERG1O14776 1098 aaKnown RBP15.61■□□□□ 0.09
CPSF3-202ENST00000460593 WASHC2CQ9Y4E1 1318 aa15.61■□□□□ 0.09
CPSF3-202ENST00000460593 CDCA7LQ96GN5 454 aa15.61■□□□□ 0.09
CPSF3-202ENST00000460593 LRRIQ1Q96JM4 1722 aa15.6■□□□□ 0.09
CPSF3-202ENST00000460593 RCAN3Q9UKA8 241 aa15.6■□□□□ 0.09
CPSF3-202ENST00000460593 FRAT1Q92837 279 aaPredicted RBP15.59■□□□□ 0.09
CPSF3-202ENST00000460593 HMGXB3Q12766 1538 aa15.59■□□□□ 0.09
CPSF3-202ENST00000460593 ANKRD30BQ9BXX2 1392 aa15.59■□□□□ 0.09
CPSF3-202ENST00000460593 MAGI3Q5TCQ9 1506 aa15.59■□□□□ 0.09
CPSF3-202ENST00000460593 GSE1Q14687 1217 aa15.58■□□□□ 0.08
CPSF3-202ENST00000460593 NFKBIBQ15653 356 aa15.58■□□□□ 0.08
CPSF3-202ENST00000460593 EFCAB5A4FU69 1503 aa15.58■□□□□ 0.08
CPSF3-202ENST00000460593 PPM1GO15355 546 aaPredicted RBP15.57■□□□□ 0.08
CPSF3-202ENST00000460593 TEX14Q8IWB6 1497 aa15.57■□□□□ 0.08
CPSF3-202ENST00000460593 ZNF644Q9H582 1327 aaPredicted RBP15.57■□□□□ 0.08
CPSF3-202ENST00000460593 USP35Q9P2H5 1018 aa15.57■□□□□ 0.08
CPSF3-202ENST00000460593 USP47Q96K76 1375 aa15.56■□□□□ 0.08
CPSF3-202ENST00000460593 HECW1Q76N89 1606 aa15.56■□□□□ 0.08
CPSF3-202ENST00000460593 CADPSQ9ULU8 1353 aa15.55■□□□□ 0.08
CPSF3-202ENST00000460593 RPRD2Q5VT52 1461 aaKnown RBP15.54■□□□□ 0.08
CPSF3-202ENST00000460593 BCORL1Q5H9F3 1711 aa15.53■□□□□ 0.08
CPSF3-202ENST00000460593 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
CPSF3-202ENST00000460593 CRBNQ96SW2 442 aa15.53■□□□□ 0.08
CPSF3-202ENST00000460593 GRIN2BQ13224 1484 aa15.52■□□□□ 0.08
CPSF3-202ENST00000460593 UGGT2Q9NYU1 1516 aa15.52■□□□□ 0.07
CPSF3-202ENST00000460593 KDM2AQ9Y2K7 1162 aa15.51■□□□□ 0.07
CPSF3-202ENST00000460593 TDRD9Q8NDG6 1382 aaKnown RBP15.51■□□□□ 0.07
CPSF3-202ENST00000460593 C20orf194Q5TEA3 1177 aa15.5■□□□□ 0.07
CPSF3-202ENST00000460593 UBE2Q2Q8WVN8 375 aa15.5■□□□□ 0.07
CPSF3-202ENST00000460593 FRAT2O75474 233 aaPredicted RBP15.49■□□□□ 0.07
CPSF3-202ENST00000460593 GCC2Q8IWJ2 1684 aa15.49■□□□□ 0.07
CPSF3-202ENST00000460593 EHBP1L1Q8N3D4 1523 aa15.48■□□□□ 0.07
CPSF3-202ENST00000460593 MS4A1P11836 297 aa15.48■□□□□ 0.07
CPSF3-202ENST00000460593 ST20-MTHFSA0A0A6YYL1 179 aa15.47■□□□□ 0.07
CPSF3-202ENST00000460593 DAXXQ9UER7 740 aaPredicted RBP15.47■□□□□ 0.07
CPSF3-202ENST00000460593 POLA1P09884 1462 aaPredicted RBP15.47■□□□□ 0.07
CPSF3-202ENST00000460593 DCAF11Q8TEB1 546 aa15.46■□□□□ 0.07
CPSF3-202ENST00000460593 CARD11Q9BXL7 1154 aa15.46■□□□□ 0.07
CPSF3-202ENST00000460593 ABCA5Q8WWZ7 1642 aa15.46■□□□□ 0.07
CPSF3-202ENST00000460593 CTTNBP2Q8WZ74 1663 aa15.46■□□□□ 0.07
CPSF3-202ENST00000460593 CDK13Q14004 1512 aaKnown RBP15.45■□□□□ 0.06
CPSF3-202ENST00000460593 LRPPRCP42704 1394 aaKnown RBP15.45■□□□□ 0.06
CPSF3-202ENST00000460593 FANCD2Q9BXW9 1451 aa15.45■□□□□ 0.06
CPSF3-202ENST00000460593 MYBBP1AQ9BQG0 1328 aaKnown RBP15.44■□□□□ 0.06
CPSF3-202ENST00000460593 DDRGK1Q96HY6 314 aa15.44■□□□□ 0.06
CPSF3-202ENST00000460593 TCOF1Q13428 1488 aaKnown RBP15.44■□□□□ 0.06
CPSF3-202ENST00000460593 PKD2Q13563 968 aa15.43■□□□□ 0.06
CPSF3-202ENST00000460593 MIA2Q96PC5 1412 aa15.43■□□□□ 0.06
CPSF3-202ENST00000460593 RGS3P49796 1198 aa15.43■□□□□ 0.06
CPSF3-202ENST00000460593 ARXQ96QS3 562 aa15.42■□□□□ 0.06
CPSF3-202ENST00000460593 ARHGEF11O15085 1522 aa15.42■□□□□ 0.06
CPSF3-202ENST00000460593 ABCA10Q8WWZ4 1543 aa15.42■□□□□ 0.06
CPSF3-202ENST00000460593 CC2D1BQ5T0F9 858 aaKnown RBP15.42■□□□□ 0.06
CPSF3-202ENST00000460593 KIF15Q9NS87 1388 aa15.42■□□□□ 0.06
CPSF3-202ENST00000460593 ZNF777Q9ULD5 760 aaPredicted RBP15.4■□□□□ 0.06
CPSF3-202ENST00000460593 POLR1AO95602 1720 aaPredicted RBP15.4■□□□□ 0.06
CPSF3-202ENST00000460593 DAPK1P53355 1430 aa15.4■□□□□ 0.06
CPSF3-202ENST00000460593 ABCC5O15440 1437 aa15.39■□□□□ 0.05
CPSF3-202ENST00000460593 PRDM2Q13029 1718 aa15.39■□□□□ 0.05
CPSF3-202ENST00000460593 BRD4O60885 1362 aaPredicted RBP15.39■□□□□ 0.05
CPSF3-202ENST00000460593 SAMD9Q5K651 1589 aa15.38■□□□□ 0.05
CPSF3-202ENST00000460593 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
CPSF3-202ENST00000460593 NESP48681 1621 aa15.36■□□□□ 0.05
CPSF3-202ENST00000460593 PZPP20742 1482 aa15.36■□□□□ 0.05
CPSF3-202ENST00000460593 C8orf34Q49A92 452 aa15.36■□□□□ 0.05
CPSF3-202ENST00000460593 RALBP1Q15311 655 aa15.36■□□□□ 0.05
CPSF3-202ENST00000460593 EPRSP07814 1512 aaKnown RBP15.35■□□□□ 0.05
CPSF3-202ENST00000460593 POGKQ9P215 609 aa15.35■□□□□ 0.05
CPSF3-202ENST00000460593 THOC2Q8NI27 1593 aaKnown RBP15.35■□□□□ 0.05
CPSF3-202ENST00000460593 NLRP13Q86W25 1043 aa15.35■□□□□ 0.05
CPSF3-202ENST00000460593 KDM5CP41229 1560 aa15.34■□□□□ 0.05
CPSF3-202ENST00000460593 CUL7Q14999 1698 aa15.34■□□□□ 0.05
CPSF3-202ENST00000460593 CC2D2AQ9P2K1 1620 aa15.34■□□□□ 0.05
CPSF3-202ENST00000460593 MBD5Q9P267 1494 aa15.33■□□□□ 0.05
CPSF3-202ENST00000460593 FAM161AQ3B820 660 aa15.32■□□□□ 0.04
CPSF3-202ENST00000460593 DNMBPQ6XZF7 1577 aa15.31■□□□□ 0.04
CPSF3-202ENST00000460593 KDM2BQ8NHM5 1336 aa15.31■□□□□ 0.04
CPSF3-202ENST00000460593 PDE3BQ13370 1112 aa15.31■□□□□ 0.04
CPSF3-202ENST00000460593 ROCK2O75116 1388 aaKnown RBP15.31■□□□□ 0.04
CPSF3-202ENST00000460593 SLKQ9H2G2 1235 aaPredicted RBP15.31■□□□□ 0.04
CPSF3-202ENST00000460593 KTN1Q86UP2 1357 aaKnown RBP15.3■□□□□ 0.04
CPSF3-202ENST00000460593 RRAGDQ9NQL2 400 aaPredicted RBP15.3■□□□□ 0.04
CPSF3-202ENST00000460593 ROCK1Q13464 1354 aa15.29■□□□□ 0.04
CPSF3-202ENST00000460593 KIAA1107Q9UPP5 1409 aa15.29■□□□□ 0.04
CPSF3-202ENST00000460593 ARID4BQ4LE39 1312 aaPredicted RBP15.29■□□□□ 0.04
CPSF3-202ENST00000460593 RGL3Q3MIN7 710 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms