RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 CEBPAP49715 358 aaPredicted RBP28.76■■■□□ 2.19
SF3B4-202ENST00000457312 HECW1Q76N89 1606 aa28.76■■■□□ 2.19
SF3B4-202ENST00000457312 RAPGEF6Q8TEU7 1601 aa28.66■■■□□ 2.18
SF3B4-202ENST00000457312 NCOA1Q15788 1441 aa28.64■■■□□ 2.18
SF3B4-202ENST00000457312 UBAP1LF5GYI3 381 aa28.64■■■□□ 2.18
SF3B4-202ENST00000457312 C9orf84Q5VXU9 1444 aa28.63■■■□□ 2.17
SF3B4-202ENST00000457312 C3P01024 1663 aa28.61■■■□□ 2.17
SF3B4-202ENST00000457312 ATP10AO60312 1499 aa28.6■■■□□ 2.17
SF3B4-202ENST00000457312 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.58■■■□□ 2.17
SF3B4-202ENST00000457312 NUP153P49790 1475 aaKnown RBP28.53■■■□□ 2.16
SF3B4-202ENST00000457312 ZNF335Q9H4Z2 1342 aaPredicted RBP28.5■■■□□ 2.15
SF3B4-202ENST00000457312 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.5■■■□□ 2.15
SF3B4-202ENST00000457312 HNRNPUL2Q1KMD3 747 aaKnown RBP28.5■■■□□ 2.15
SF3B4-202ENST00000457312 P3H3Q8IVL6 736 aa28.48■■■□□ 2.15
SF3B4-202ENST00000457312 FAM9AQ8IZU1 332 aaPredicted RBP28.48■■■□□ 2.15
SF3B4-202ENST00000457312 SAMD9Q5K651 1589 aa28.48■■■□□ 2.15
SF3B4-202ENST00000457312 CAMSAP1Q5T5Y3 1602 aa28.47■■■□□ 2.15
SF3B4-202ENST00000457312 HSPA1LP34931 641 aa28.47■■■□□ 2.15
SF3B4-202ENST00000457312 SCAPERQ9BY12 1400 aa28.46■■■□□ 2.15
SF3B4-202ENST00000457312 TRAPPC8Q9Y2L5 1435 aa28.43■■■□□ 2.14
SF3B4-202ENST00000457312 PHF23Q9BUL5 403 aaPredicted RBP28.4■■■□□ 2.14
SF3B4-202ENST00000457312 REREQ9P2R6 1566 aa28.36■■■□□ 2.13
SF3B4-202ENST00000457312 DIP2CQ9Y2E4 1556 aa28.36■■■□□ 2.13
SF3B4-202ENST00000457312 PRXQ9BXM0 1461 aa28.35■■■□□ 2.13
SF3B4-202ENST00000457312 KDM5CP41229 1560 aa28.33■■■□□ 2.12
SF3B4-202ENST00000457312 PLEKHD1A6NEE1 506 aa28.32■■■□□ 2.12
SF3B4-202ENST00000457312 SCAF1Q9H7N4 1312 aaKnown RBP28.31■■■□□ 2.12
SF3B4-202ENST00000457312 NCKAP5LQ9HCH0 1330 aa28.3■■■□□ 2.12
SF3B4-202ENST00000457312 PLCH2O75038 1416 aa28.29■■■□□ 2.12
SF3B4-202ENST00000457312 ABCA6Q8N139 1617 aa28.28■■■□□ 2.12
SF3B4-202ENST00000457312 AGLP35573 1532 aa28.28■■■□□ 2.12
SF3B4-202ENST00000457312 ZNF142P52746 1687 aaPredicted RBP28.27■■■□□ 2.12
SF3B4-202ENST00000457312 PIP4K2BP78356 416 aa28.27■■■□□ 2.12
SF3B4-202ENST00000457312 ZNF518AQ6AHZ1 1483 aa28.27■■■□□ 2.12
SF3B4-202ENST00000457312 SUPT6HQ7KZ85 1726 aaKnown RBP28.25■■■□□ 2.11
SF3B4-202ENST00000457312 PLA2R1Q13018 1463 aa28.25■■■□□ 2.11
SF3B4-202ENST00000457312 MYO5CQ9NQX4 1742 aa28.24■■■□□ 2.11
SF3B4-202ENST00000457312 TCOF1Q13428 1488 aaKnown RBP28.23■■■□□ 2.11
SF3B4-202ENST00000457312 NPATQ14207 1427 aa28.22■■■□□ 2.11
SF3B4-202ENST00000457312 MROH2AA6NES4 1674 aa28.21■■■□□ 2.11
SF3B4-202ENST00000457312 MYO3AQ8NEV4 1616 aa28.21■■■□□ 2.11
SF3B4-202ENST00000457312 CNTLNQ9NXG0 1405 aa28.19■■■□□ 2.1
SF3B4-202ENST00000457312 ALKQ9UM73 1620 aa28.18■■■□□ 2.1
SF3B4-202ENST00000457312 TOM1O60784 492 aa28.16■■■□□ 2.1
SF3B4-202ENST00000457312 PKD2Q13563 968 aa28.16■■■□□ 2.1
SF3B4-202ENST00000457312 ESF1Q9H501 851 aaKnown RBP28.15■■■□□ 2.1
SF3B4-202ENST00000457312 CPS1P31327 1500 aa28.13■■■□□ 2.09
SF3B4-202ENST00000457312 CEP170BQ9Y4F5 1589 aaPredicted RBP28.13■■■□□ 2.09
SF3B4-202ENST00000457312 CDK13Q14004 1512 aaKnown RBP28.12■■■□□ 2.09
SF3B4-202ENST00000457312 AFAP1Q8N556 730 aa28.1■■■□□ 2.09
SF3B4-202ENST00000457312 PPP6R1Q9UPN7 881 aa28.1■■■□□ 2.09
SF3B4-202ENST00000457312 RGS17Q9UGC6 210 aaPredicted RBP28.09■■■□□ 2.09
SF3B4-202ENST00000457312 EFCAB2Q5VUJ9 269 aa28.08■■■□□ 2.09
SF3B4-202ENST00000457312 MLH3Q9UHC1 1453 aa28.08■■■□□ 2.09
SF3B4-202ENST00000457312 POLR1AO95602 1720 aaPredicted RBP28.02■■■□□ 2.08
SF3B4-202ENST00000457312 MYT1LQ9UL68 1186 aa28.02■■■□□ 2.08
SF3B4-202ENST00000457312 PTPRKQ15262 1439 aa28.01■■■□□ 2.08
SF3B4-202ENST00000457312 KIF14Q15058 1648 aa28.01■■■□□ 2.07
SF3B4-202ENST00000457312 ARHGAP5Q13017 1502 aa28.01■■■□□ 2.07
SF3B4-202ENST00000457312 SHANK2Q9UPX8 1470 aa28■■■□□ 2.07
SF3B4-202ENST00000457312 ZMYM3Q14202 1370 aa27.99■■■□□ 2.07
SF3B4-202ENST00000457312 KIDINS220Q9ULH0 1771 aa27.99■■■□□ 2.07
SF3B4-202ENST00000457312 NEURL4Q96JN8 1562 aa27.99■■■□□ 2.07
SF3B4-202ENST00000457312 CLTCQ00610 1675 aaKnown RBP27.97■■■□□ 2.07
SF3B4-202ENST00000457312 SETD1AO15047 1707 aaKnown RBP27.96■■■□□ 2.07
SF3B4-202ENST00000457312 VWDEQ8N2E2 1590 aa27.93■■■□□ 2.06
SF3B4-202ENST00000457312 ITSN2Q9NZM3 1697 aa27.93■■■□□ 2.06
SF3B4-202ENST00000457312 DNMT1P26358 1616 aaKnown RBP27.92■■■□□ 2.06
SF3B4-202ENST00000457312 CDC42BPBQ9Y5S2 1711 aa27.91■■■□□ 2.06
SF3B4-202ENST00000457312 ABCC1P33527 1531 aa27.91■■■□□ 2.06
SF3B4-202ENST00000457312 SENP3Q9H4L4 574 aaPredicted RBP27.89■■■□□ 2.06
SF3B4-202ENST00000457312 A2ML1A8K2U0 1454 aa27.86■■■□□ 2.05
SF3B4-202ENST00000457312 RNF17Q9BXT8 1623 aaKnown RBP27.85■■■□□ 2.05
SF3B4-202ENST00000457312 RANGAP1P46060 587 aaPredicted RBP27.84■■■□□ 2.05
SF3B4-202ENST00000457312 POTEAQ6S8J7 498 aa27.84■■■□□ 2.05
SF3B4-202ENST00000457312 PREX2Q70Z35 1606 aa27.8■■■□□ 2.04
SF3B4-202ENST00000457312 STRCP1A6NGW2 1772 aa27.78■■■□□ 2.04
SF3B4-202ENST00000457312 SYNMO15061 1565 aa27.75■■■□□ 2.03
SF3B4-202ENST00000457312 PLXNC1O60486 1568 aa27.75■■■□□ 2.03
SF3B4-202ENST00000457312 TROQ12816 1431 aaPredicted RBP27.74■■■□□ 2.03
SF3B4-202ENST00000457312 SAMD9LQ8IVG5 1584 aa27.73■■■□□ 2.03
SF3B4-202ENST00000457312 LRRC7Q96NW7 1537 aa27.72■■■□□ 2.03
SF3B4-202ENST00000457312 DEPDC5O75140 1603 aa27.67■■■□□ 2.02
SF3B4-202ENST00000457312 CLIP1P30622 1438 aa27.66■■■□□ 2.02
SF3B4-202ENST00000457312 IQGAP1P46940 1657 aa27.65■■■□□ 2.02
SF3B4-202ENST00000457312 SRCAPQ6ZRS2 3230 aa27.65■■■□□ 2.02
SF3B4-202ENST00000457312 MED14O60244 1454 aa27.64■■■□□ 2.02
SF3B4-202ENST00000457312 NPHP4O75161 1426 aaPredicted RBP27.63■■■□□ 2.01
SF3B4-202ENST00000457312 LRRIQ1Q96JM4 1722 aa27.63■■■□□ 2.01
SF3B4-202ENST00000457312 CDK11AQ9UQ88 783 aaPredicted RBP27.62■■■□□ 2.01
SF3B4-202ENST00000457312 CDC42BPAQ5VT25 1732 aa27.6■■■□□ 2.01
SF3B4-202ENST00000457312 ATP7AQ04656 1500 aa27.6■■■□□ 2.01
SF3B4-202ENST00000457312 INO80Q9ULG1 1556 aaPredicted RBP27.6■■■□□ 2.01
SF3B4-202ENST00000457312 A2MP01023 1474 aa27.57■■■□□ 2
SF3B4-202ENST00000457312 CSRNP3Q8WYN3 585 aa27.57■■■□□ 2
SF3B4-202ENST00000457312 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.57■■■□□ 2
SF3B4-202ENST00000457312 XIRP1Q702N8 1843 aaKnown RBP27.56■■■□□ 2
SF3B4-202ENST00000457312 SYCP2Q9BX26 1530 aa27.56■■■□□ 2
SF3B4-202ENST00000457312 ANKLE2Q86XL3 938 aa27.55■■■□□ 2
SF3B4-202ENST00000457312 UPF1Q92900 1129 aaKnown RBP eCLIP27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms