RNA–Protein interactions for RNA: ENST00000453744.6

UBE2D3-210, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 3,990 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-210ENST00000453744 CADPSQ9ULU8 1353 aa18.33■□□□□ 0.53
UBE2D3-210ENST00000453744 AQRO60306 1485 aaKnown RBP eCLIP18.33■□□□□ 0.532e-7■■■■□ 25.1
UBE2D3-210ENST00000453744 PKD2Q13563 968 aa18.32■□□□□ 0.52
UBE2D3-210ENST00000453744 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
UBE2D3-210ENST00000453744 SKAP1Q86WV1 359 aa18.32■□□□□ 0.52
UBE2D3-210ENST00000453744 CASKIN1Q8WXD9 1431 aa18.32■□□□□ 0.52
UBE2D3-210ENST00000453744 MYOM3Q5VTT5 1437 aa18.31■□□□□ 0.52
UBE2D3-210ENST00000453744 NCOA2Q15596 1464 aa18.31■□□□□ 0.52
UBE2D3-210ENST00000453744 BIVM-ERCC5R4GMW8 1640 aa18.31■□□□□ 0.52
UBE2D3-210ENST00000453744 ZNF644Q9H582 1327 aaPredicted RBP18.3■□□□□ 0.52
UBE2D3-210ENST00000453744 RRP1P56182 461 aaKnown RBP18.3■□□□□ 0.52
UBE2D3-210ENST00000453744 CFTRP13569 1480 aa18.29■□□□□ 0.52
UBE2D3-210ENST00000453744 DCAF11Q8TEB1 546 aa18.29■□□□□ 0.52
UBE2D3-210ENST00000453744 CFDP1Q9UEE9 299 aaPredicted RBP18.29■□□□□ 0.52
UBE2D3-210ENST00000453744 DDRGK1Q96HY6 314 aa18.28■□□□□ 0.52
UBE2D3-210ENST00000453744 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.28■□□□□ 0.52
UBE2D3-210ENST00000453744 ST20-MTHFSA0A0A6YYL1 179 aa18.26■□□□□ 0.51
UBE2D3-210ENST00000453744 FYCO1Q9BQS8 1478 aa18.26■□□□□ 0.51
UBE2D3-210ENST00000453744 MAP3K1Q13233 1512 aa18.25■□□□□ 0.51
UBE2D3-210ENST00000453744 USP47Q96K76 1375 aa18.25■□□□□ 0.51
UBE2D3-210ENST00000453744 CANXP27824 592 aaKnown RBP18.24■□□□□ 0.51
UBE2D3-210ENST00000453744 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
UBE2D3-210ENST00000453744 CDCA7LQ96GN5 454 aa18.24■□□□□ 0.51
UBE2D3-210ENST00000453744 BRPF3Q9ULD4 1205 aa18.23■□□□□ 0.51
UBE2D3-210ENST00000453744 PNISRQ8TF01 805 aaKnown RBP18.22■□□□□ 0.51
UBE2D3-210ENST00000453744 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.21■□□□□ 0.511e-10■■■□□ 14.9
UBE2D3-210ENST00000453744 SMG6Q86US8 1419 aaKnown RBP18.21■□□□□ 0.51
UBE2D3-210ENST00000453744 CRBNQ96SW2 442 aa18.2■□□□□ 0.5
UBE2D3-210ENST00000453744 WDR43Q15061 677 aaKnown RBP eCLIP18.2■□□□□ 0.5
UBE2D3-210ENST00000453744 TSPY4P0CV99 314 aa18.18■□□□□ 0.5
UBE2D3-210ENST00000453744 TSPY10P0CW01 314 aa18.18■□□□□ 0.5
UBE2D3-210ENST00000453744 NCOA1Q15788 1441 aa18.18■□□□□ 0.5
UBE2D3-210ENST00000453744 PTPN23Q9H3S7 1636 aa18.16■□□□□ 0.5
UBE2D3-210ENST00000453744 FANCD2Q9BXW9 1451 aa18.16■□□□□ 0.5
UBE2D3-210ENST00000453744 MYBBP1AQ9BQG0 1328 aaKnown RBP18.15■□□□□ 0.5
UBE2D3-210ENST00000453744 GSE1Q14687 1217 aa18.15■□□□□ 0.5
UBE2D3-210ENST00000453744 BACH2Q9BYV9 841 aa18.15■□□□□ 0.5
UBE2D3-210ENST00000453744 RALBP1Q15311 655 aa18.14■□□□□ 0.49
UBE2D3-210ENST00000453744 USP35Q9P2H5 1018 aa18.14■□□□□ 0.49
UBE2D3-210ENST00000453744 NLRP13Q86W25 1043 aa18.13■□□□□ 0.49
UBE2D3-210ENST00000453744 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.12■□□□□ 0.49
UBE2D3-210ENST00000453744 NFKBIBQ15653 356 aa18.12■□□□□ 0.49
UBE2D3-210ENST00000453744 KIF15Q9NS87 1388 aa18.12■□□□□ 0.49
UBE2D3-210ENST00000453744 KTN1Q86UP2 1357 aaKnown RBP18.11■□□□□ 0.49
UBE2D3-210ENST00000453744 NUP155O75694 1391 aa18.1■□□□□ 0.49
UBE2D3-210ENST00000453744 SLKQ9H2G2 1235 aaPredicted RBP18.09■□□□□ 0.49
UBE2D3-210ENST00000453744 FRAT1Q92837 279 aaPredicted RBP18.08■□□□□ 0.49
UBE2D3-210ENST00000453744 ROCK2O75116 1388 aaKnown RBP18.08■□□□□ 0.48
UBE2D3-210ENST00000453744 MS4A1P11836 297 aa18.07■□□□□ 0.48
UBE2D3-210ENST00000453744 ANKRD30BQ9BXX2 1392 aa18.07■□□□□ 0.48
UBE2D3-210ENST00000453744 SPRYD3Q8NCJ5 442 aa18.06■□□□□ 0.48
UBE2D3-210ENST00000453744 NEUROD2Q15784 382 aa18.06■□□□□ 0.48
UBE2D3-210ENST00000453744 PDE3BQ13370 1112 aa18.05■□□□□ 0.48
UBE2D3-210ENST00000453744 KNSTRNQ9Y448 316 aa18.04■□□□□ 0.48
UBE2D3-210ENST00000453744 EFCAB5A4FU69 1503 aa18.04■□□□□ 0.48
UBE2D3-210ENST00000453744 FRAT2O75474 233 aaPredicted RBP18.02■□□□□ 0.48
UBE2D3-210ENST00000453744 CCDC146Q8IYE0 955 aa18.02■□□□□ 0.48
UBE2D3-210ENST00000453744 PANK3Q9H999 370 aa18.02■□□□□ 0.48
UBE2D3-210ENST00000453744 C20orf194Q5TEA3 1177 aa18.01■□□□□ 0.47
UBE2D3-210ENST00000453744 HMGXB3Q12766 1538 aa18.01■□□□□ 0.47
UBE2D3-210ENST00000453744 UPF2Q9HAU5 1272 aaKnown RBP18.01■□□□□ 0.47
UBE2D3-210ENST00000453744 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
UBE2D3-210ENST00000453744 PLEKHD1A6NEE1 506 aa18■□□□□ 0.47
UBE2D3-210ENST00000453744 CFAP43Q8NDM7 1665 aa17.98■□□□□ 0.47
UBE2D3-210ENST00000453744 FAM161AQ3B820 660 aa17.98■□□□□ 0.47
UBE2D3-210ENST00000453744 BRD4O60885 1362 aaPredicted RBP17.97■□□□□ 0.47
UBE2D3-210ENST00000453744 GZF1Q9H116 711 aaPredicted RBP17.97■□□□□ 0.47
UBE2D3-210ENST00000453744 NESP48681 1621 aa17.97■□□□□ 0.47
UBE2D3-210ENST00000453744 BECN1Q14457 450 aa17.97■□□□□ 0.47
UBE2D3-210ENST00000453744 CDK13Q14004 1512 aaKnown RBP17.96■□□□□ 0.47
UBE2D3-210ENST00000453744 EHBP1L1Q8N3D4 1523 aa17.96■□□□□ 0.47
UBE2D3-210ENST00000453744 HNRNPMP52272 730 aaKnown RBP eCLIP17.96■□□□□ 0.464e-13■■■■■ 32.7
UBE2D3-210ENST00000453744 NBPF1Q3BBV0 1214 aa17.96■□□□□ 0.46
UBE2D3-210ENST00000453744 GAPVD1Q14C86 1478 aa17.96■□□□□ 0.46
UBE2D3-210ENST00000453744 RPRD2Q5VT52 1461 aaKnown RBP17.96■□□□□ 0.46
UBE2D3-210ENST00000453744 TMF1P82094 1093 aa17.95■□□□□ 0.46
UBE2D3-210ENST00000453744 SUPT6HQ7KZ85 1726 aaKnown RBP17.95■□□□□ 0.46
UBE2D3-210ENST00000453744 CHMP7Q8WUX9 453 aaPredicted RBP17.95■□□□□ 0.46
UBE2D3-210ENST00000453744 DHX29Q7Z478 1369 aaKnown RBP17.95■□□□□ 0.46
UBE2D3-210ENST00000453744 TNNT2P45379 298 aaPredicted RBP17.94■□□□□ 0.46
UBE2D3-210ENST00000453744 ANKRD30AQ9BXX3 1397 aa17.94■□□□□ 0.46
UBE2D3-210ENST00000453744 ADAMTS8Q9UP79 889 aa17.94■□□□□ 0.46
UBE2D3-210ENST00000453744 CENPQQ7L2Z9 268 aaPredicted RBP17.94■□□□□ 0.46
UBE2D3-210ENST00000453744 GOLGA2Q08379 1002 aa17.93■□□□□ 0.46
UBE2D3-210ENST00000453744 NAP1L5Q96NT1 182 aaPredicted RBP17.93■□□□□ 0.46
UBE2D3-210ENST00000453744 RNF123Q5XPI4 1314 aa17.92■□□□□ 0.46
UBE2D3-210ENST00000453744 TOPBP1Q92547 1522 aa17.91■□□□□ 0.46
UBE2D3-210ENST00000453744 DAPK1P53355 1430 aa17.91■□□□□ 0.46
UBE2D3-210ENST00000453744 SNAPC4Q5SXM2 1469 aa17.9■□□□□ 0.46
UBE2D3-210ENST00000453744 ARID4BQ4LE39 1312 aaPredicted RBP17.9■□□□□ 0.46
UBE2D3-210ENST00000453744 MIA2Q96PC5 1412 aa17.88■□□□□ 0.45
UBE2D3-210ENST00000453744 PDS5BQ9NTI5 1447 aa17.88■□□□□ 0.45
UBE2D3-210ENST00000453744 ABCA10Q8WWZ4 1543 aa17.87■□□□□ 0.45
UBE2D3-210ENST00000453744 ABCC5O15440 1437 aa17.87■□□□□ 0.45
UBE2D3-210ENST00000453744 APAF1O14727 1248 aa17.86■□□□□ 0.45
UBE2D3-210ENST00000453744 SENP3Q9H4L4 574 aaPredicted RBP17.86■□□□□ 0.45
UBE2D3-210ENST00000453744 KIAA1107Q9UPP5 1409 aa17.86■□□□□ 0.45
UBE2D3-210ENST00000453744 CLUAP1Q96AJ1 413 aa17.86■□□□□ 0.45
UBE2D3-210ENST00000453744 EPRSP07814 1512 aaKnown RBP17.85■□□□□ 0.45
UBE2D3-210ENST00000453744 COG6Q9Y2V7 657 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms