RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 SETD5Q9C0A6 1442 aa11.62□□□□□ -0.55
LSM5-208ENST00000450169 TOP2BQ02880 1626 aa11.62□□□□□ -0.55
LSM5-208ENST00000450169 SPINK5Q9NQ38 1064 aaPredicted RBP11.61□□□□□ -0.55
LSM5-208ENST00000450169 ZBED9Q6R2W3 1325 aa11.61□□□□□ -0.55
LSM5-208ENST00000450169 BIVM-ERCC5R4GMW8 1640 aa11.6□□□□□ -0.55
LSM5-208ENST00000450169 PRDM2Q13029 1718 aa11.59□□□□□ -0.55
LSM5-208ENST00000450169 NPM2Q86SE8 214 aaKnown RBP11.59□□□□□ -0.55
LSM5-208ENST00000450169 FAM43AQ8N2R8 423 aa11.58□□□□□ -0.55
LSM5-208ENST00000450169 ZMYND15Q9H091 742 aa11.58□□□□□ -0.56
LSM5-208ENST00000450169 CUX1P39880 1505 aa11.57□□□□□ -0.56
LSM5-208ENST00000450169 PODXL2Q9NZ53 605 aa11.56□□□□□ -0.56
LSM5-208ENST00000450169 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
LSM5-208ENST00000450169 CADPSQ9ULU8 1353 aa11.54□□□□□ -0.56
LSM5-208ENST00000450169 CCDC184Q52MB2 194 aa11.54□□□□□ -0.56
LSM5-208ENST00000450169 FAM9BQ8IZU0 186 aa11.54□□□□□ -0.56
LSM5-208ENST00000450169 FRAT1Q92837 279 aaPredicted RBP11.54□□□□□ -0.56
LSM5-208ENST00000450169 AKNAQ7Z591 1439 aa11.54□□□□□ -0.56
LSM5-208ENST00000450169 PLEKHG5O94827 1062 aa11.53□□□□□ -0.56
LSM5-208ENST00000450169 TONSLQ96HA7 1378 aa11.53□□□□□ -0.56
LSM5-208ENST00000450169 SMG6Q86US8 1419 aaKnown RBP11.52□□□□□ -0.56
LSM5-208ENST00000450169 DAXXQ9UER7 740 aaPredicted RBP11.52□□□□□ -0.57
LSM5-208ENST00000450169 RNF123Q5XPI4 1314 aa11.51□□□□□ -0.57
LSM5-208ENST00000450169 FHAD1B1AJZ9 1412 aa11.51□□□□□ -0.57
LSM5-208ENST00000450169 NFKBIBQ15653 356 aa11.51□□□□□ -0.57
LSM5-208ENST00000450169 TCERG1O14776 1098 aaKnown RBP11.5□□□□□ -0.57
LSM5-208ENST00000450169 MRS2Q9HD23 443 aa11.5□□□□□ -0.57
LSM5-208ENST00000450169 PDE4AP27815 886 aa11.49□□□□□ -0.57
LSM5-208ENST00000450169 ERICH3Q5RHP9 1530 aa11.49□□□□□ -0.57
LSM5-208ENST00000450169 CNTLNQ9NXG0 1405 aa11.48□□□□□ -0.57
LSM5-208ENST00000450169 NESP48681 1621 aa11.48□□□□□ -0.57
LSM5-208ENST00000450169 DDRGK1Q96HY6 314 aa11.48□□□□□ -0.57
LSM5-208ENST00000450169 BACH2Q9BYV9 841 aa11.47□□□□□ -0.57
LSM5-208ENST00000450169 NCOA2Q15596 1464 aa11.47□□□□□ -0.57
LSM5-208ENST00000450169 PLCD3Q8N3E9 789 aa11.47□□□□□ -0.57
LSM5-208ENST00000450169 PRKRIP1Q9H875 184 aaPredicted RBP11.47□□□□□ -0.57
LSM5-208ENST00000450169 NUDCQ9Y266 331 aa11.47□□□□□ -0.57
LSM5-208ENST00000450169 DCAF11Q8TEB1 546 aa11.45□□□□□ -0.58
LSM5-208ENST00000450169 MS4A1P11836 297 aa11.44□□□□□ -0.58
LSM5-208ENST00000450169 FANCD2Q9BXW9 1451 aa11.44□□□□□ -0.58
LSM5-208ENST00000450169 PRXQ9BXM0 1461 aa11.43□□□□□ -0.58
LSM5-208ENST00000450169 CIZ1Q9ULV3 898 aaPredicted RBP11.43□□□□□ -0.58
LSM5-208ENST00000450169 RRP9O43818 475 aaKnown RBP11.42□□□□□ -0.58
LSM5-208ENST00000450169 HSP90AA2PQ14568 343 aaPredicted RBP11.42□□□□□ -0.58
LSM5-208ENST00000450169 FAM50AQ14320 339 aaKnown RBP11.42□□□□□ -0.58
LSM5-208ENST00000450169 CAPN15O75808 1086 aa11.41□□□□□ -0.58
LSM5-208ENST00000450169 HSPA5P11021 654 aaKnown RBP11.41□□□□□ -0.58
LSM5-208ENST00000450169 TIAM1Q13009 1591 aa11.41□□□□□ -0.58
LSM5-208ENST00000450169 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
LSM5-208ENST00000450169 PHLDB1Q86UU1 1377 aa11.4□□□□□ -0.58
LSM5-208ENST00000450169 ABCB7O75027 752 aa11.4□□□□□ -0.58
LSM5-208ENST00000450169 MAP3K1Q13233 1512 aa11.4□□□□□ -0.59
LSM5-208ENST00000450169 DNAJC5Q9H3Z4 198 aa11.39□□□□□ -0.59
LSM5-208ENST00000450169 RRAGDQ9NQL2 400 aaPredicted RBP11.39□□□□□ -0.59
LSM5-208ENST00000450169 KIF27Q86VH2 1401 aa11.39□□□□□ -0.59
LSM5-208ENST00000450169 KDM5BQ9UGL1 1544 aa11.39□□□□□ -0.59
LSM5-208ENST00000450169 ARHGAP35Q9NRY4 1499 aa11.39□□□□□ -0.59
LSM5-208ENST00000450169 LAMC3Q9Y6N6 1575 aa11.38□□□□□ -0.59
LSM5-208ENST00000450169 HSP90AA1P07900 732 aaKnown RBP11.37□□□□□ -0.59
LSM5-208ENST00000450169 LRRC9Q6ZRR7 1453 aa11.37□□□□□ -0.59
LSM5-208ENST00000450169 DNMBPQ6XZF7 1577 aa11.36□□□□□ -0.59
LSM5-208ENST00000450169 FRAT2O75474 233 aaPredicted RBP11.36□□□□□ -0.59
LSM5-208ENST00000450169 EIF4G2P78344 907 aaKnown RBP eCLIP11.36□□□□□ -0.59
LSM5-208ENST00000450169 NAP1L5Q96NT1 182 aaPredicted RBP11.36□□□□□ -0.59
LSM5-208ENST00000450169 SLC4A3P48751 1232 aa11.35□□□□□ -0.59
LSM5-208ENST00000450169 CCDC7Q96M83 1385 aa11.35□□□□□ -0.59
LSM5-208ENST00000450169 TOPBP1Q92547 1522 aa11.34□□□□□ -0.59
LSM5-208ENST00000450169 NCOA1Q15788 1441 aa11.34□□□□□ -0.59
LSM5-208ENST00000450169 EXOC6Q8TAG9 804 aa11.34□□□□□ -0.59
LSM5-208ENST00000450169 UACAQ9BZF9 1416 aa11.33□□□□□ -0.6
LSM5-208ENST00000450169 PNNQ9H307 717 aaKnown RBP11.33□□□□□ -0.6
LSM5-208ENST00000450169 RRP1P56182 461 aaKnown RBP11.33□□□□□ -0.6
LSM5-208ENST00000450169 ZNF692Q9BU19 519 aaPredicted RBP11.33□□□□□ -0.6
LSM5-208ENST00000450169 POLA1P09884 1462 aaPredicted RBP11.33□□□□□ -0.6
LSM5-208ENST00000450169 CCDC18Q5T9S5 1454 aa11.33□□□□□ -0.6
LSM5-208ENST00000450169 KIF21AQ7Z4S6 1674 aa11.33□□□□□ -0.6
LSM5-208ENST00000450169 RAD54L2Q9Y4B4 1467 aa11.32□□□□□ -0.6
LSM5-208ENST00000450169 URB2Q14146 1524 aaKnown RBP11.32□□□□□ -0.6
LSM5-208ENST00000450169 L1TD1Q5T7N2 865 aaKnown RBP11.3□□□□□ -0.6
LSM5-208ENST00000450169 RNF25Q96BH1 459 aaPredicted RBP11.3□□□□□ -0.6
LSM5-208ENST00000450169 IGF1RP08069 1367 aa11.3□□□□□ -0.6
LSM5-208ENST00000450169 STAG3Q9UJ98 1225 aa11.29□□□□□ -0.6
LSM5-208ENST00000450169 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.29□□□□□ -0.6
LSM5-208ENST00000450169 ABCA5Q8WWZ7 1642 aa11.28□□□□□ -0.6
LSM5-208ENST00000450169 CLCN1P35523 988 aa11.28□□□□□ -0.6
LSM5-208ENST00000450169 NKX1-1Q15270 411 aaPredicted RBP11.28□□□□□ -0.6
LSM5-208ENST00000450169 PDS5BQ9NTI5 1447 aa11.27□□□□□ -0.6
LSM5-208ENST00000450169 POGKQ9P215 609 aa11.27□□□□□ -0.61
LSM5-208ENST00000450169 ABCA10Q8WWZ4 1543 aa11.27□□□□□ -0.61
LSM5-208ENST00000450169 HS6ST3Q8IZP7 471 aa11.26□□□□□ -0.61
LSM5-208ENST00000450169 CFAP43Q8NDM7 1665 aa11.26□□□□□ -0.61
LSM5-208ENST00000450169 HFM1A2PYH4 1435 aa11.26□□□□□ -0.61
LSM5-208ENST00000450169 SENP3-EIF4A1A0A087X0R7 540 aa11.25□□□□□ -0.61
LSM5-208ENST00000450169 RBM10P98175 930 aaKnown RBP11.25□□□□□ -0.61
LSM5-208ENST00000450169 RCAN3Q9UKA8 241 aa11.25□□□□□ -0.61
LSM5-208ENST00000450169 KIF7Q2M1P5 1343 aa11.24□□□□□ -0.61
LSM5-208ENST00000450169 PTPN23Q9H3S7 1636 aa11.24□□□□□ -0.61
LSM5-208ENST00000450169 A0A0U1RQG5 324 aaPredicted RBP11.24□□□□□ -0.61
LSM5-208ENST00000450169 OSCARQ8IYS5 282 aa11.24□□□□□ -0.61
LSM5-208ENST00000450169 SKAP1Q86WV1 359 aa11.24□□□□□ -0.61
LSM5-208ENST00000450169 CARMIL1Q5VZK9 1371 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms