RNA–Protein interactions for RNA: ENST00000444942.1

LINC00642-203, long intergenic non-protein coding RNA 642, humanhuman

TSL 1 (best)

Gene LINC00642, Length 1,376 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-203ENST00000444942 RAPGEF2Q9Y4G8 1499 aa15.59■□□□□ 0.09
LINC00642-203ENST00000444942 NCOA1Q15788 1441 aa15.56■□□□□ 0.08
LINC00642-203ENST00000444942 HECW1Q76N89 1606 aa15.56■□□□□ 0.08
LINC00642-203ENST00000444942 ARID3CA6NKF2 412 aa15.56■□□□□ 0.08
LINC00642-203ENST00000444942 PHF23Q9BUL5 403 aaPredicted RBP15.56■□□□□ 0.08
LINC00642-203ENST00000444942 HSPA1LP34931 641 aa15.55■□□□□ 0.08
LINC00642-203ENST00000444942 C3P01024 1663 aa15.54■□□□□ 0.08
LINC00642-203ENST00000444942 ZNF335Q9H4Z2 1342 aaPredicted RBP15.51■□□□□ 0.07
LINC00642-203ENST00000444942 ATP10AO60312 1499 aa15.5■□□□□ 0.07
LINC00642-203ENST00000444942 C9orf84Q5VXU9 1444 aa15.5■□□□□ 0.07
LINC00642-203ENST00000444942 CAMSAP1Q5T5Y3 1602 aa15.48■□□□□ 0.07
LINC00642-203ENST00000444942 CHIC1Q5VXU3 224 aa15.47■□□□□ 0.07
LINC00642-203ENST00000444942 TRAPPC8Q9Y2L5 1435 aa15.45■□□□□ 0.06
LINC00642-203ENST00000444942 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
LINC00642-203ENST00000444942 FAM9AQ8IZU1 332 aaPredicted RBP15.44■□□□□ 0.06
LINC00642-203ENST00000444942 RAPGEF6Q8TEU7 1601 aa15.44■□□□□ 0.06
LINC00642-203ENST00000444942 PIP4K2BP78356 416 aa15.42■□□□□ 0.06
LINC00642-203ENST00000444942 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.42■□□□□ 0.06
LINC00642-203ENST00000444942 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
LINC00642-203ENST00000444942 TOM1O60784 492 aa15.39■□□□□ 0.05
LINC00642-203ENST00000444942 HNRNPUL2Q1KMD3 747 aaKnown RBP15.39■□□□□ 0.05
LINC00642-203ENST00000444942 SCAPERQ9BY12 1400 aa15.39■□□□□ 0.05
LINC00642-203ENST00000444942 NCKAP5LQ9HCH0 1330 aa15.38■□□□□ 0.05
LINC00642-203ENST00000444942 SUPT6HQ7KZ85 1726 aaKnown RBP15.38■□□□□ 0.05
LINC00642-203ENST00000444942 RGS17Q9UGC6 210 aaPredicted RBP15.36■□□□□ 0.05
LINC00642-203ENST00000444942 REREQ9P2R6 1566 aa15.36■□□□□ 0.05
LINC00642-203ENST00000444942 NUP153P49790 1475 aaKnown RBP15.35■□□□□ 0.05
LINC00642-203ENST00000444942 PLA2R1Q13018 1463 aa15.34■□□□□ 0.05
LINC00642-203ENST00000444942 ZNF142P52746 1687 aaPredicted RBP15.34■□□□□ 0.05
LINC00642-203ENST00000444942 TCOF1Q13428 1488 aaKnown RBP15.33■□□□□ 0.05
LINC00642-203ENST00000444942 PKD2Q13563 968 aa15.33■□□□□ 0.04
LINC00642-203ENST00000444942 P3H3Q8IVL6 736 aa15.33■□□□□ 0.04
LINC00642-203ENST00000444942 AGLP35573 1532 aa15.33■□□□□ 0.04
LINC00642-203ENST00000444942 ALKQ9UM73 1620 aa15.32■□□□□ 0.04
LINC00642-203ENST00000444942 DIP2CQ9Y2E4 1556 aa15.32■□□□□ 0.04
LINC00642-203ENST00000444942 CPS1P31327 1500 aa15.32■□□□□ 0.04
LINC00642-203ENST00000444942 PLEKHD1A6NEE1 506 aa15.32■□□□□ 0.04
LINC00642-203ENST00000444942 EHMT2Q96KQ7 1210 aa15.32■□□□□ 0.04
LINC00642-203ENST00000444942 NPATQ14207 1427 aa15.32■□□□□ 0.04
LINC00642-203ENST00000444942 MROH2AA6NES4 1674 aa15.31■□□□□ 0.04
LINC00642-203ENST00000444942 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
LINC00642-203ENST00000444942 ESF1Q9H501 851 aaKnown RBP15.3■□□□□ 0.04
LINC00642-203ENST00000444942 KDM5CP41229 1560 aa15.3■□□□□ 0.04
LINC00642-203ENST00000444942 SAMD9Q5K651 1589 aa15.3■□□□□ 0.04
LINC00642-203ENST00000444942 PLCH2O75038 1416 aa15.28■□□□□ 0.04
LINC00642-203ENST00000444942 PTPRKQ15262 1439 aa15.28■□□□□ 0.04
LINC00642-203ENST00000444942 CNTLNQ9NXG0 1405 aa15.28■□□□□ 0.04
LINC00642-203ENST00000444942 PPP6R1Q9UPN7 881 aa15.28■□□□□ 0.04
LINC00642-203ENST00000444942 MYO3AQ8NEV4 1616 aa15.28■□□□□ 0.04
LINC00642-203ENST00000444942 ZNF518AQ6AHZ1 1483 aa15.28■□□□□ 0.04
LINC00642-203ENST00000444942 ABCA6Q8N139 1617 aa15.27■□□□□ 0.04
LINC00642-203ENST00000444942 SETD1AO15047 1707 aaKnown RBP15.27■□□□□ 0.04
LINC00642-203ENST00000444942 PRXQ9BXM0 1461 aa15.27■□□□□ 0.03
LINC00642-203ENST00000444942 EEA1Q15075 1411 aa15.27■□□□□ 0.03
LINC00642-203ENST00000444942 MYO5CQ9NQX4 1742 aa15.26■□□□□ 0.03
LINC00642-203ENST00000444942 CEP170BQ9Y4F5 1589 aaPredicted RBP15.25■□□□□ 0.03
LINC00642-203ENST00000444942 SHANK2Q9UPX8 1470 aa15.23■□□□□ 0.03
LINC00642-203ENST00000444942 POLR1AO95602 1720 aaPredicted RBP15.23■□□□□ 0.03
LINC00642-203ENST00000444942 POTEAQ6S8J7 498 aa15.23■□□□□ 0.03
LINC00642-203ENST00000444942 RANGAP1P46060 587 aaPredicted RBP15.2■□□□□ 0.02
LINC00642-203ENST00000444942 EFCAB2Q5VUJ9 269 aa15.2■□□□□ 0.02
LINC00642-203ENST00000444942 AFAP1Q8N556 730 aa15.19■□□□□ 0.02
LINC00642-203ENST00000444942 MLH3Q9UHC1 1453 aa15.18■□□□□ 0.02
LINC00642-203ENST00000444942 SENP3Q9H4L4 574 aaPredicted RBP15.18■□□□□ 0.02
LINC00642-203ENST00000444942 ZMYM3Q14202 1370 aa15.18■□□□□ 0.02
LINC00642-203ENST00000444942 NEURL4Q96JN8 1562 aa15.17■□□□□ 0.02
LINC00642-203ENST00000444942 MYT1LQ9UL68 1186 aa15.17■□□□□ 0.02
LINC00642-203ENST00000444942 VWDEQ8N2E2 1590 aa15.16■□□□□ 0.02
LINC00642-203ENST00000444942 SRCAPQ6ZRS2 3230 aa15.16■□□□□ 0.02
LINC00642-203ENST00000444942 CLTCQ00610 1675 aaKnown RBP15.15■□□□□ 0.02
LINC00642-203ENST00000444942 DNMT1P26358 1616 aaKnown RBP15.14■□□□□ 0.01
LINC00642-203ENST00000444942 RNF17Q9BXT8 1623 aaKnown RBP15.14■□□□□ 0.01
LINC00642-203ENST00000444942 KIDINS220Q9ULH0 1771 aa15.13■□□□□ 0.01
LINC00642-203ENST00000444942 UBTFP17480 764 aaKnown RBP15.12■□□□□ 0.01
LINC00642-203ENST00000444942 CDK13Q14004 1512 aaKnown RBP15.1■□□□□ 0.01
LINC00642-203ENST00000444942 A2ML1A8K2U0 1454 aa15.1■□□□□ 0.01
LINC00642-203ENST00000444942 UPF1Q92900 1129 aaKnown RBP eCLIP15.1■□□□□ 0.01
LINC00642-203ENST00000444942 ARHGAP5Q13017 1502 aa15.09■□□□□ 0.01
LINC00642-203ENST00000444942 STRCP1A6NGW2 1772 aa15.09■□□□□ 0.01
LINC00642-203ENST00000444942 SYNMO15061 1565 aa15.07■□□□□ 0
LINC00642-203ENST00000444942 LRRC7Q96NW7 1537 aa15.06■□□□□ 0
LINC00642-203ENST00000444942 ITSN2Q9NZM3 1697 aa15.06■□□□□ 0
LINC00642-203ENST00000444942 KIF14Q15058 1648 aa15.06■□□□□ 0
LINC00642-203ENST00000444942 CDC42BPBQ9Y5S2 1711 aa15.06■□□□□ 0
LINC00642-203ENST00000444942 ABCC1P33527 1531 aa15.02■□□□□ -0
LINC00642-203ENST00000444942 DEPDC5O75140 1603 aa15.02□□□□□ -0.01
LINC00642-203ENST00000444942 MED14O60244 1454 aa15□□□□□ -0.01
LINC00642-203ENST00000444942 IQGAP1P46940 1657 aa15□□□□□ -0.01
LINC00642-203ENST00000444942 XIRP1Q702N8 1843 aaKnown RBP14.99□□□□□ -0.01
LINC00642-203ENST00000444942 NPHP4O75161 1426 aaPredicted RBP14.98□□□□□ -0.01
LINC00642-203ENST00000444942 ANKLE2Q86XL3 938 aa14.98□□□□□ -0.01
LINC00642-203ENST00000444942 PLXNC1O60486 1568 aa14.97□□□□□ -0.01
LINC00642-203ENST00000444942 PREX2Q70Z35 1606 aa14.97□□□□□ -0.01
LINC00642-203ENST00000444942 FAM135BQ49AJ0 1406 aa14.95□□□□□ -0.02
LINC00642-203ENST00000444942 SAMD9LQ8IVG5 1584 aa14.95□□□□□ -0.02
LINC00642-203ENST00000444942 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.94□□□□□ -0.02
LINC00642-203ENST00000444942 LOC105371045A0A1W2PR82 267 aa14.92□□□□□ -0.02
LINC00642-203ENST00000444942 TROQ12816 1431 aaPredicted RBP14.92□□□□□ -0.02
LINC00642-203ENST00000444942 ROBO1Q9Y6N7 1651 aa14.91□□□□□ -0.02
LINC00642-203ENST00000444942 CDK11AQ9UQ88 783 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms