RNA–Protein interactions for RNA: ENST00000442515.5

LINC00642-202, long intergenic non-protein coding RNA 642, humanhuman

TSL 3 BASIC

Gene LINC00642, Length 670 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-202ENST00000442515 RANGAP1P46060 587 aaPredicted RBP23.74■■□□□ 1.39
LINC00642-202ENST00000442515 ARHGEF12Q9NZN5 1544 aa23.73■■□□□ 1.39
LINC00642-202ENST00000442515 CSRNP3Q8WYN3 585 aa23.72■■□□□ 1.39
LINC00642-202ENST00000442515 SCAPERQ9BY12 1400 aa23.71■■□□□ 1.39
LINC00642-202ENST00000442515 C9orf84Q5VXU9 1444 aa23.69■■□□□ 1.38
LINC00642-202ENST00000442515 CEBPAP49715 358 aaPredicted RBP23.68■■□□□ 1.38
LINC00642-202ENST00000442515 ATP10AO60312 1499 aa23.68■■□□□ 1.38
LINC00642-202ENST00000442515 PREX1Q8TCU6 1659 aa23.67■■□□□ 1.38
LINC00642-202ENST00000442515 PLCH2O75038 1416 aa23.67■■□□□ 1.38
LINC00642-202ENST00000442515 DMRT2Q9Y5R5 561 aa23.65■■□□□ 1.38
LINC00642-202ENST00000442515 CDK13Q14004 1512 aaKnown RBP23.64■■□□□ 1.37
LINC00642-202ENST00000442515 UHRF1BP1Q6BDS2 1440 aa23.63■■□□□ 1.37
LINC00642-202ENST00000442515 SPATA31D1Q6ZQQ2 1576 aa23.62■■□□□ 1.37
LINC00642-202ENST00000442515 STRCQ7RTU9 1775 aa23.6■■□□□ 1.37
LINC00642-202ENST00000442515 EFCAB2Q5VUJ9 269 aa23.55■■□□□ 1.36
LINC00642-202ENST00000442515 PTPRTO14522 1441 aa23.55■■□□□ 1.36
LINC00642-202ENST00000442515 ZNF518AQ6AHZ1 1483 aa23.55■■□□□ 1.36
LINC00642-202ENST00000442515 EEA1Q15075 1411 aa23.51■■□□□ 1.35
LINC00642-202ENST00000442515 KDM5CP41229 1560 aa23.5■■□□□ 1.35
LINC00642-202ENST00000442515 AFAP1Q8N556 730 aa23.49■■□□□ 1.35
LINC00642-202ENST00000442515 LTBP4Q8N2S1 1624 aa23.48■■□□□ 1.35
LINC00642-202ENST00000442515 DIP2CQ9Y2E4 1556 aa23.47■■□□□ 1.35
LINC00642-202ENST00000442515 MYO5CQ9NQX4 1742 aa23.47■■□□□ 1.35
LINC00642-202ENST00000442515 REREQ9P2R6 1566 aa23.45■■□□□ 1.34
LINC00642-202ENST00000442515 ARHGAP5Q13017 1502 aa23.44■■□□□ 1.34
LINC00642-202ENST00000442515 IQSEC2Q5JU85 1478 aa23.44■■□□□ 1.34
LINC00642-202ENST00000442515 MYT1LQ9UL68 1186 aa23.44■■□□□ 1.34
LINC00642-202ENST00000442515 KIF14Q15058 1648 aa23.44■■□□□ 1.34
LINC00642-202ENST00000442515 ATP1B4Q9UN42 357 aaPredicted RBP23.43■■□□□ 1.34
LINC00642-202ENST00000442515 NCOA1Q15788 1441 aa23.42■■□□□ 1.34
LINC00642-202ENST00000442515 TRAPPC8Q9Y2L5 1435 aa23.42■■□□□ 1.34
LINC00642-202ENST00000442515 CDK11AQ9UQ88 783 aaPredicted RBP23.41■■□□□ 1.34
LINC00642-202ENST00000442515 SETD1BQ9UPS6 1966 aaKnown RBP23.41■■□□□ 1.34
LINC00642-202ENST00000442515 C3P01024 1663 aa23.41■■□□□ 1.34
LINC00642-202ENST00000442515 TROQ12816 1431 aaPredicted RBP23.4■■□□□ 1.34
LINC00642-202ENST00000442515 FMN1Q68DA7 1419 aa23.4■■□□□ 1.34
LINC00642-202ENST00000442515 ABCA6Q8N139 1617 aa23.4■■□□□ 1.34
LINC00642-202ENST00000442515 MLH3Q9UHC1 1453 aa23.39■■□□□ 1.34
LINC00642-202ENST00000442515 ESF1Q9H501 851 aaKnown RBP23.39■■□□□ 1.33
LINC00642-202ENST00000442515 AGLP35573 1532 aa23.38■■□□□ 1.33
LINC00642-202ENST00000442515 CLIP1P30622 1438 aa23.34■■□□□ 1.33
LINC00642-202ENST00000442515 CNTLNQ9NXG0 1405 aa23.33■■□□□ 1.33
LINC00642-202ENST00000442515 ARHGAP35Q9NRY4 1499 aa23.3■■□□□ 1.32
LINC00642-202ENST00000442515 CAMSAP1Q5T5Y3 1602 aa23.3■■□□□ 1.32
LINC00642-202ENST00000442515 ABCC1P33527 1531 aa23.3■■□□□ 1.32
LINC00642-202ENST00000442515 NPATQ14207 1427 aa23.28■■□□□ 1.32
LINC00642-202ENST00000442515 ZNF335Q9H4Z2 1342 aaPredicted RBP23.28■■□□□ 1.32
LINC00642-202ENST00000442515 UBAP1LF5GYI3 381 aa23.27■■□□□ 1.32
LINC00642-202ENST00000442515 NCKAP5LQ9HCH0 1330 aa23.25■■□□□ 1.31
LINC00642-202ENST00000442515 CDC42BPBQ9Y5S2 1711 aa23.24■■□□□ 1.31
LINC00642-202ENST00000442515 PREX2Q70Z35 1606 aa23.23■■□□□ 1.31
LINC00642-202ENST00000442515 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
LINC00642-202ENST00000442515 UBTFP17480 764 aaKnown RBP23.22■■□□□ 1.31
LINC00642-202ENST00000442515 ITSN2Q9NZM3 1697 aa23.22■■□□□ 1.31
LINC00642-202ENST00000442515 KIDINS220Q9ULH0 1771 aa23.22■■□□□ 1.31
LINC00642-202ENST00000442515 ZMYM3Q14202 1370 aa23.21■■□□□ 1.31
LINC00642-202ENST00000442515 PLA2R1Q13018 1463 aa23.18■■□□□ 1.3
LINC00642-202ENST00000442515 MROH2AA6NES4 1674 aa23.18■■□□□ 1.3
LINC00642-202ENST00000442515 PKD2Q13563 968 aa23.17■■□□□ 1.3
LINC00642-202ENST00000442515 TCOF1Q13428 1488 aaKnown RBP23.17■■□□□ 1.3
LINC00642-202ENST00000442515 LRRIQ1Q96JM4 1722 aa23.16■■□□□ 1.3
LINC00642-202ENST00000442515 SAMD9LQ8IVG5 1584 aa23.15■■□□□ 1.3
LINC00642-202ENST00000442515 MYO3AQ8NEV4 1616 aa23.14■■□□□ 1.29
LINC00642-202ENST00000442515 ZNF142P52746 1687 aaPredicted RBP23.13■■□□□ 1.29
LINC00642-202ENST00000442515 CEP170BQ9Y4F5 1589 aaPredicted RBP23.12■■□□□ 1.29
LINC00642-202ENST00000442515 CCDC18Q5T9S5 1454 aa23.11■■□□□ 1.29
LINC00642-202ENST00000442515 PTPRKQ15262 1439 aa23.11■■□□□ 1.29
LINC00642-202ENST00000442515 SPAG9O60271 1321 aaKnown RBP23.1■■□□□ 1.29
LINC00642-202ENST00000442515 SYCP2Q9BX26 1530 aa23.1■■□□□ 1.29
LINC00642-202ENST00000442515 PPP6R1Q9UPN7 881 aa23.1■■□□□ 1.29
LINC00642-202ENST00000442515 ZNF777Q9ULD5 760 aaPredicted RBP23.09■■□□□ 1.29
LINC00642-202ENST00000442515 HSPA1LP34931 641 aa23.08■■□□□ 1.29
LINC00642-202ENST00000442515 MED1Q15648 1581 aaPredicted RBP23.08■■□□□ 1.29
LINC00642-202ENST00000442515 CASKIN1Q8WXD9 1431 aa23.08■■□□□ 1.28
LINC00642-202ENST00000442515 PLXNC1O60486 1568 aa23.07■■□□□ 1.28
LINC00642-202ENST00000442515 CDC42BPAQ5VT25 1732 aa23.06■■□□□ 1.28
LINC00642-202ENST00000442515 CLTCQ00610 1675 aaKnown RBP23.06■■□□□ 1.28
LINC00642-202ENST00000442515 SCAF1Q9H7N4 1312 aaKnown RBP23.06■■□□□ 1.28
LINC00642-202ENST00000442515 ATP7AQ04656 1500 aa23.05■■□□□ 1.28
LINC00642-202ENST00000442515 SUPT6HQ7KZ85 1726 aaKnown RBP23.05■■□□□ 1.28
LINC00642-202ENST00000442515 A2MP01023 1474 aa23.05■■□□□ 1.28
LINC00642-202ENST00000442515 HNRNPMP52272 730 aaKnown RBP eCLIP23.04■■□□□ 1.28
LINC00642-202ENST00000442515 PIP4K2BP78356 416 aa23.03■■□□□ 1.28
LINC00642-202ENST00000442515 GGT6Q6P531 493 aa23.02■■□□□ 1.28
LINC00642-202ENST00000442515 GPATCH8Q9UKJ3 1502 aaKnown RBP23.02■■□□□ 1.28
LINC00642-202ENST00000442515 INO80Q9ULG1 1556 aaPredicted RBP23.01■■□□□ 1.27
LINC00642-202ENST00000442515 A2ML1A8K2U0 1454 aa23■■□□□ 1.27
LINC00642-202ENST00000442515 KIAA1107Q9UPP5 1409 aa22.99■■□□□ 1.27
LINC00642-202ENST00000442515 TOM1O60784 492 aa22.98■■□□□ 1.27
LINC00642-202ENST00000442515 CPS1P31327 1500 aa22.98■■□□□ 1.27
LINC00642-202ENST00000442515 PLEKHH2Q8IVE3 1493 aa22.96■■□□□ 1.27
LINC00642-202ENST00000442515 DNMT1P26358 1616 aaKnown RBP22.95■■□□□ 1.26
LINC00642-202ENST00000442515 FYCO1Q9BQS8 1478 aa22.95■■□□□ 1.26
LINC00642-202ENST00000442515 SHANK2Q9UPX8 1470 aa22.94■■□□□ 1.26
LINC00642-202ENST00000442515 NEURL4Q96JN8 1562 aa22.93■■□□□ 1.26
LINC00642-202ENST00000442515 CFDP1Q9UEE9 299 aaPredicted RBP22.93■■□□□ 1.26
LINC00642-202ENST00000442515 PHF23Q9BUL5 403 aaPredicted RBP22.92■■□□□ 1.26
LINC00642-202ENST00000442515 TNRQ92752 1358 aa22.89■■□□□ 1.25
LINC00642-202ENST00000442515 CCNB3Q8WWL7 1395 aa22.88■■□□□ 1.25
LINC00642-202ENST00000442515 ALKQ9UM73 1620 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms