RNA–Protein interactions for RNA: ENST00000441222.7

USP46-201, Transcript of ubiquitin specific peptidase 46, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP46, Length 7,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-201ENST00000441222 NCBP3Q53F19 620 aaKnown RBP8.42□□□□□ -1.06
USP46-201ENST00000441222 PHF14O94880 888 aa8.41□□□□□ -1.06
USP46-201ENST00000441222 FHAD1B1AJZ9 1412 aa8.41□□□□□ -1.06
USP46-201ENST00000441222 TIMELESSQ9UNS1 1208 aa8.41□□□□□ -1.06
USP46-201ENST00000441222 KIF27Q86VH2 1401 aa8.41□□□□□ -1.06
USP46-201ENST00000441222 A0A0U1RQG5 324 aaPredicted RBP8.4□□□□□ -1.06
USP46-201ENST00000441222 CEP89Q96ST8 783 aa8.4□□□□□ -1.06
USP46-201ENST00000441222 CHMP4CQ96CF2 233 aa8.4□□□□□ -1.06
USP46-201ENST00000441222 KIF3AQ9Y496 699 aa8.4□□□□□ -1.06
USP46-201ENST00000441222 CEP164Q9UPV0 1460 aa8.39□□□□□ -1.07
USP46-201ENST00000441222 PRM3Q9NNZ6 103 aa8.38□□□□□ -1.07
USP46-201ENST00000441222 CEP162Q5TB80 1403 aa8.38□□□□□ -1.07
USP46-201ENST00000441222 HDGFL2Q7Z4V5 671 aaPredicted RBP8.37□□□□□ -1.07
USP46-201ENST00000441222 MORC1Q86VD1 984 aa8.37□□□□□ -1.07
USP46-201ENST00000441222 RWDD1Q9H446 243 aaPredicted RBP8.37□□□□□ -1.07
USP46-201ENST00000441222 CC2D1BQ5T0F9 858 aaKnown RBP8.37□□□□□ -1.07
USP46-201ENST00000441222 SRPK2P78362 688 aaKnown RBP8.37□□□□□ -1.07
USP46-201ENST00000441222 SETQ01105 290 aaPredicted RBP8.37□□□□□ -1.07
USP46-201ENST00000441222 PMFBP1Q8TBY8 1022 aa8.37□□□□□ -1.07
USP46-201ENST00000441222 SPAG9O60271 1321 aaKnown RBP8.36□□□□□ -1.07
USP46-201ENST00000441222 CCER2I3L3R5 266 aa8.36□□□□□ -1.07
USP46-201ENST00000441222 TPM3P06753 285 aa8.36□□□□□ -1.07
USP46-201ENST00000441222 HMMRO75330 724 aa8.36□□□□□ -1.07
USP46-201ENST00000441222 SENP3Q9H4L4 574 aaPredicted RBP8.36□□□□□ -1.07
USP46-201ENST00000441222 RTN4Q9NQC3 1192 aaKnown RBP8.36□□□□□ -1.07
USP46-201ENST00000441222 KTN1Q86UP2 1357 aaKnown RBP8.35□□□□□ -1.07
USP46-201ENST00000441222 TSR1Q2NL82 804 aaKnown RBP8.35□□□□□ -1.07
USP46-201ENST00000441222 GORABQ5T7V8 394 aa8.35□□□□□ -1.07
USP46-201ENST00000441222 TCERG1O14776 1098 aaKnown RBP8.34□□□□□ -1.07
USP46-201ENST00000441222 CCNB3Q8WWL7 1395 aa8.34□□□□□ -1.07
USP46-201ENST00000441222 B4GALNT3Q6L9W6 998 aa8.34□□□□□ -1.07
USP46-201ENST00000441222 CCDC70Q6NSX1 233 aa8.33□□□□□ -1.08
USP46-201ENST00000441222 TAF7LQ5H9L4 462 aa8.33□□□□□ -1.08
USP46-201ENST00000441222 STK31Q9BXU1 1019 aa8.33□□□□□ -1.08
USP46-201ENST00000441222 DEKP35659 375 aaKnown RBP8.33□□□□□ -1.08
USP46-201ENST00000441222 EIF3AQ14152 1382 aaKnown RBP8.33□□□□□ -1.08
USP46-201ENST00000441222 GPS2Q13227 327 aa8.32□□□□□ -1.08
USP46-201ENST00000441222 RASSF8Q8NHQ8 419 aa8.32□□□□□ -1.08
USP46-201ENST00000441222 DCAF11Q8TEB1 546 aa8.32□□□□□ -1.08
USP46-201ENST00000441222 TNIKQ9UKE5 1360 aa8.32□□□□□ -1.08
USP46-201ENST00000441222 TPM1P09493 284 aa8.32□□□□□ -1.08
USP46-201ENST00000441222 RALBP1Q15311 655 aa8.32□□□□□ -1.08
USP46-201ENST00000441222 BAZ1BQ9UIG0 1483 aaKnown RBP8.31□□□□□ -1.08
USP46-201ENST00000441222 ST18O60284 1047 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 TPM2P07951 284 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 LMOD3Q0VAK6 560 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 PHLDB1Q86UU1 1377 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 LRRFIP1Q32MZ4 808 aaKnown RBP8.31□□□□□ -1.08
USP46-201ENST00000441222 ERCC6Q03468 1493 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 GOLGA6L3A6NEY3 463 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 WRNQ14191 1432 aaPredicted RBP eCLIP8.31□□□□□ -1.08
USP46-201ENST00000441222 KIF16BQ96L93 1317 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 G3V3G9 751 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 DCAF8Q5TAQ9 597 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 ATP6V1DQ9Y5K8 247 aa8.31□□□□□ -1.08
USP46-201ENST00000441222 HSP90B1P14625 803 aaKnown RBP8.3□□□□□ -1.08
USP46-201ENST00000441222 RCAN3Q9UKA8 241 aa8.29□□□□□ -1.08
USP46-201ENST00000441222 SF3A1Q15459 793 aaKnown RBP8.29□□□□□ -1.08
USP46-201ENST00000441222 TRIM6-TRIM34B2RNG4 842 aa8.29□□□□□ -1.08
USP46-201ENST00000441222 ITPRIPQ8IWB1 547 aa8.29□□□□□ -1.08
USP46-201ENST00000441222 SPRYD3Q8NCJ5 442 aa8.29□□□□□ -1.08
USP46-201ENST00000441222 TPD52L1Q16890 204 aaPredicted RBP8.28□□□□□ -1.08
USP46-201ENST00000441222 NACADO15069 1562 aa8.28□□□□□ -1.08
USP46-201ENST00000441222 DDX11L8A8MPP1 907 aa8.28□□□□□ -1.08
USP46-201ENST00000441222 MARCH6O60337 910 aa8.28□□□□□ -1.08
USP46-201ENST00000441222 GOLGA6L19H0YKK7 550 aa8.28□□□□□ -1.08
USP46-201ENST00000441222 ARHGAP35Q9NRY4 1499 aa8.27□□□□□ -1.09
USP46-201ENST00000441222 AMER1Q5JTC6 1135 aaPredicted RBP8.27□□□□□ -1.09
USP46-201ENST00000441222 CSB-PGBD3P0DP91 1061 aa8.27□□□□□ -1.09
USP46-201ENST00000441222 TERF2IPQ9NYB0 399 aa8.27□□□□□ -1.09
USP46-201ENST00000441222 U2AF1L5P0DN76 240 aaPredicted RBP8.26□□□□□ -1.09
USP46-201ENST00000441222 U2AF1Q01081 240 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP46-201ENST00000441222 SKOR2Q2VWA4 1001 aaPredicted RBP8.26□□□□□ -1.09
USP46-201ENST00000441222 CHMP3Q9Y3E7 222 aa8.26□□□□□ -1.09
USP46-201ENST00000441222 AKAP17AQ02040 695 aaKnown RBP8.26□□□□□ -1.09
USP46-201ENST00000441222 ANO8Q9HCE9 1232 aaPredicted RBP8.26□□□□□ -1.09
USP46-201ENST00000441222 CPLX2Q6PUV4 134 aaKnown RBP8.26□□□□□ -1.09
USP46-201ENST00000441222 SOX12O15370 315 aa8.26□□□□□ -1.09
USP46-201ENST00000441222 IPO7O95373 1038 aaKnown RBP8.26□□□□□ -1.09
USP46-201ENST00000441222 PDE3BQ13370 1112 aa8.26□□□□□ -1.09
USP46-201ENST00000441222 PAK3O75914 559 aaPredicted RBP8.25□□□□□ -1.09
USP46-201ENST00000441222 GZF1Q9H116 711 aaPredicted RBP8.25□□□□□ -1.09
USP46-201ENST00000441222 HOOK1Q9UJC3 728 aaKnown RBP8.25□□□□□ -1.09
USP46-201ENST00000441222 ROCK2O75116 1388 aaKnown RBP8.25□□□□□ -1.09
USP46-201ENST00000441222 APBB1O00213 710 aa8.25□□□□□ -1.09
USP46-201ENST00000441222 ANKRD20A12PQ8NF67 263 aa8.25□□□□□ -1.09
USP46-201ENST00000441222 SETD5Q9C0A6 1442 aa8.25□□□□□ -1.09
USP46-201ENST00000441222 H3BQV1 296 aa8.25□□□□□ -1.09
USP46-201ENST00000441222 IFFO2Q5TF58 517 aa8.25□□□□□ -1.09
USP46-201ENST00000441222 CCDC47Q96A33 483 aaKnown RBP8.25□□□□□ -1.09
USP46-201ENST00000441222 SMC4Q9NTJ3 1288 aa8.24□□□□□ -1.09
USP46-201ENST00000441222 RBM19Q9Y4C8 960 aaKnown RBP8.24□□□□□ -1.09
USP46-201ENST00000441222 FRAT2O75474 233 aaPredicted RBP8.24□□□□□ -1.09
USP46-201ENST00000441222 CREBRFQ8IUR6 639 aa8.24□□□□□ -1.09
USP46-201ENST00000441222 EIF4G1Q04637 1599 aaKnown RBP8.24□□□□□ -1.09
USP46-201ENST00000441222 AMOTL1Q8IY63 956 aa8.24□□□□□ -1.09
USP46-201ENST00000441222 SENP3-EIF4A1A0A087X0R7 540 aa8.24□□□□□ -1.09
USP46-201ENST00000441222 CALRP27797 417 aaKnown RBP8.24□□□□□ -1.09
USP46-201ENST00000441222 CARMIL2Q6F5E8 1435 aa8.24□□□□□ -1.09
USP46-201ENST00000441222 TEX35Q5T0J7 233 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms