RNA–Protein interactions for RNA: ENST00000439476.6

BDNF-211, Transcript of brain derived neurotrophic factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BDNF, Length 4,532 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BDNF-211ENST00000439476 CFAP44Q96MT7 982 aa8.29□□□□□ -1.08
BDNF-211ENST00000439476 NPM1P06748 294 aaKnown RBP eCLIP8.28□□□□□ -1.08
BDNF-211ENST00000439476 RSPH4AQ5TD94 716 aa8.28□□□□□ -1.08
BDNF-211ENST00000439476 MYH16Q9H6N6 1097 aa8.28□□□□□ -1.08
BDNF-211ENST00000439476 CARD11Q9BXL7 1154 aa8.27□□□□□ -1.09
BDNF-211ENST00000439476 CC2D2AQ9P2K1 1620 aa8.27□□□□□ -1.09
BDNF-211ENST00000439476 FOXD1Q16676 465 aa8.27□□□□□ -1.09
BDNF-211ENST00000439476 RRBP1Q9P2E9 1410 aaKnown RBP8.26□□□□□ -1.09
BDNF-211ENST00000439476 GOLGA6L22H0YM25 854 aa8.26□□□□□ -1.09
BDNF-211ENST00000439476 L3MBTL2Q969R5 705 aa8.25□□□□□ -1.09
BDNF-211ENST00000439476 ZFP91Q96JP5 570 aaPredicted RBP8.25□□□□□ -1.09
BDNF-211ENST00000439476 IPO9Q96P70 1041 aaKnown RBP8.25□□□□□ -1.09
BDNF-211ENST00000439476 MPHOSPH9Q99550 1183 aa8.25□□□□□ -1.09
BDNF-211ENST00000439476 USP35Q9P2H5 1018 aa8.25□□□□□ -1.09
BDNF-211ENST00000439476 STAG3Q9UJ98 1225 aa8.25□□□□□ -1.09
BDNF-211ENST00000439476 FMN1Q68DA7 1419 aa8.25□□□□□ -1.09
BDNF-211ENST00000439476 NCAPD3P42695 1498 aa8.24□□□□□ -1.09
BDNF-211ENST00000439476 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.24□□□□□ -1.09
BDNF-211ENST00000439476 SYNJ1O43426 1573 aa8.24□□□□□ -1.09
BDNF-211ENST00000439476 FHOD3Q2V2M9 1422 aa8.24□□□□□ -1.09
BDNF-211ENST00000439476 NUDCQ9Y266 331 aa8.24□□□□□ -1.09
BDNF-211ENST00000439476 ARAP1Q96P48 1450 aa8.23□□□□□ -1.09
BDNF-211ENST00000439476 PRKRIP1Q9H875 184 aaPredicted RBP8.23□□□□□ -1.09
BDNF-211ENST00000439476 CFDP1Q9UEE9 299 aaPredicted RBP8.23□□□□□ -1.09
BDNF-211ENST00000439476 PLCD3Q8N3E9 789 aa8.23□□□□□ -1.09
BDNF-211ENST00000439476 NCLP19338 710 aaKnown RBP8.22□□□□□ -1.09
BDNF-211ENST00000439476 RGL3Q3MIN7 710 aa8.22□□□□□ -1.09
BDNF-211ENST00000439476 PHLDB1Q86UU1 1377 aa8.22□□□□□ -1.09
BDNF-211ENST00000439476 CFAP53Q96M91 514 aa8.22□□□□□ -1.09
BDNF-211ENST00000439476 ZBED9Q6R2W3 1325 aa8.22□□□□□ -1.09
BDNF-211ENST00000439476 MS4A1P11836 297 aa8.21□□□□□ -1.09
BDNF-211ENST00000439476 HSP90B1P14625 803 aaKnown RBP8.21□□□□□ -1.09
BDNF-211ENST00000439476 KCNA4P22459 653 aa8.21□□□□□ -1.09
BDNF-211ENST00000439476 PEG3Q9GZU2 1588 aa8.21□□□□□ -1.09
BDNF-211ENST00000439476 PRDM10Q9NQV6 1147 aa8.21□□□□□ -1.1
BDNF-211ENST00000439476 TCERG1O14776 1098 aaKnown RBP8.21□□□□□ -1.1
BDNF-211ENST00000439476 CCDC18Q5T9S5 1454 aa8.21□□□□□ -1.1
BDNF-211ENST00000439476 HMGXB3Q12766 1538 aa8.21□□□□□ -1.1
BDNF-211ENST00000439476 CHGAP10645 457 aaKnown RBP8.2□□□□□ -1.1
BDNF-211ENST00000439476 TRIM44Q96DX7 344 aaPredicted RBP8.2□□□□□ -1.1
BDNF-211ENST00000439476 RGS3P49796 1198 aa8.2□□□□□ -1.1
BDNF-211ENST00000439476 RCAN3Q9UKA8 241 aa8.2□□□□□ -1.1
BDNF-211ENST00000439476 CNPY4Q8N129 248 aa8.19□□□□□ -1.1
BDNF-211ENST00000439476 ERICH3Q5RHP9 1530 aa8.19□□□□□ -1.1
BDNF-211ENST00000439476 IPO4Q8TEX9 1081 aaKnown RBP8.19□□□□□ -1.1
BDNF-211ENST00000439476 CNKSR2Q8WXI2 1034 aa8.19□□□□□ -1.1
BDNF-211ENST00000439476 LRRC9Q6ZRR7 1453 aa8.19□□□□□ -1.1
BDNF-211ENST00000439476 BRPF3Q9ULD4 1205 aa8.19□□□□□ -1.1
BDNF-211ENST00000439476 CC2D1BQ5T0F9 858 aaKnown RBP8.18□□□□□ -1.1
BDNF-211ENST00000439476 IGF1RP08069 1367 aa8.18□□□□□ -1.1
BDNF-211ENST00000439476 WWC1Q8IX03 1113 aa8.18□□□□□ -1.1
BDNF-211ENST00000439476 DCAF11Q8TEB1 546 aa8.18□□□□□ -1.1
BDNF-211ENST00000439476 PRXQ9BXM0 1461 aa8.18□□□□□ -1.1
BDNF-211ENST00000439476 PLEKHD1A6NEE1 506 aa8.17□□□□□ -1.1
BDNF-211ENST00000439476 TNNT2P45379 298 aaPredicted RBP8.17□□□□□ -1.1
BDNF-211ENST00000439476 WDR97A6NE52 1622 aa8.17□□□□□ -1.1
BDNF-211ENST00000439476 CASC1Q6TDU7 716 aa8.17□□□□□ -1.1
BDNF-211ENST00000439476 KNSTRNQ9Y448 316 aa8.17□□□□□ -1.1
BDNF-211ENST00000439476 PKD2Q13563 968 aa8.17□□□□□ -1.1
BDNF-211ENST00000439476 SECISBP2LQ93073 1101 aaKnown RBP8.17□□□□□ -1.1
BDNF-211ENST00000439476 BCCIPQ9P287 314 aaKnown RBP eCLIP8.17□□□□□ -1.1
BDNF-211ENST00000439476 WASHC2AQ641Q2 1341 aa8.16□□□□□ -1.1
BDNF-211ENST00000439476 UACAQ9BZF9 1416 aa8.16□□□□□ -1.1
BDNF-211ENST00000439476 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.16□□□□□ -1.1
BDNF-211ENST00000439476 RALBP1Q15311 655 aa8.15□□□□□ -1.1
BDNF-211ENST00000439476 PNNQ9H307 717 aaKnown RBP8.15□□□□□ -1.1
BDNF-211ENST00000439476 CCDC9Q9Y3X0 531 aaKnown RBP8.15□□□□□ -1.1
BDNF-211ENST00000439476 ARID4BQ4LE39 1312 aaPredicted RBP8.15□□□□□ -1.11
BDNF-211ENST00000439476 CHMP7Q8WUX9 453 aaPredicted RBP8.15□□□□□ -1.11
BDNF-211ENST00000439476 FBXO3Q9UK99 471 aa8.15□□□□□ -1.11
BDNF-211ENST00000439476 FGD6Q6ZV73 1430 aa8.15□□□□□ -1.11
BDNF-211ENST00000439476 PATL2C9JE40 543 aaKnown RBP8.14□□□□□ -1.11
BDNF-211ENST00000439476 RRP9O43818 475 aaKnown RBP8.14□□□□□ -1.11
BDNF-211ENST00000439476 FTSJ3Q8IY81 847 aaKnown RBP8.14□□□□□ -1.11
BDNF-211ENST00000439476 DNAJC5BQ9UF47 199 aa8.14□□□□□ -1.11
BDNF-211ENST00000439476 KTN1Q86UP2 1357 aaKnown RBP8.14□□□□□ -1.11
BDNF-211ENST00000439476 CCDC7Q96M83 1385 aa8.14□□□□□ -1.11
BDNF-211ENST00000439476 CNTLNQ9NXG0 1405 aa8.14□□□□□ -1.11
BDNF-211ENST00000439476 PDE4AP27815 886 aa8.13□□□□□ -1.11
BDNF-211ENST00000439476 TDRD9Q8NDG6 1382 aaKnown RBP8.13□□□□□ -1.11
BDNF-211ENST00000439476 CADPSQ9ULU8 1353 aa8.13□□□□□ -1.11
BDNF-211ENST00000439476 EXOC6Q8TAG9 804 aa8.12□□□□□ -1.11
BDNF-211ENST00000439476 PDE3BQ13370 1112 aa8.12□□□□□ -1.11
BDNF-211ENST00000439476 TOP2BQ02880 1626 aa8.12□□□□□ -1.11
BDNF-211ENST00000439476 KIF7Q2M1P5 1343 aa8.12□□□□□ -1.11
BDNF-211ENST00000439476 TMF1P82094 1093 aa8.11□□□□□ -1.11
BDNF-211ENST00000439476 NLRP13Q86W25 1043 aa8.11□□□□□ -1.11
BDNF-211ENST00000439476 RRP1P56182 461 aaKnown RBP8.11□□□□□ -1.11
BDNF-211ENST00000439476 ROCK2O75116 1388 aaKnown RBP8.11□□□□□ -1.11
BDNF-211ENST00000439476 PTMSP20962 102 aa8.11□□□□□ -1.11
BDNF-211ENST00000439476 GTF2E1P29083 439 aaPredicted RBP8.11□□□□□ -1.11
BDNF-211ENST00000439476 PAK3O75914 559 aaPredicted RBP8.11□□□□□ -1.11
BDNF-211ENST00000439476 CCDC184Q52MB2 194 aa8.1□□□□□ -1.11
BDNF-211ENST00000439476 ZRSR1Q15695 479 aaKnown RBP8.1□□□□□ -1.11
BDNF-211ENST00000439476 NEUROD2Q15784 382 aa8.1□□□□□ -1.11
BDNF-211ENST00000439476 FRAT1Q92837 279 aaPredicted RBP8.1□□□□□ -1.11
BDNF-211ENST00000439476 TIAM1Q13009 1591 aa8.1□□□□□ -1.11
BDNF-211ENST00000439476 KIF15Q9NS87 1388 aa8.09□□□□□ -1.11
BDNF-211ENST00000439476 MYBBP1AQ9BQG0 1328 aaKnown RBP8.09□□□□□ -1.11
BDNF-211ENST00000439476 NUP155O75694 1391 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms