RNA–Protein interactions for RNA: ENST00000437737.3

LINC01088-201, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 5 BASIC

Gene LINC01088, Length 973 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-201ENST00000437737 PREX1Q8TCU6 1659 aa23.65■■□□□ 1.38
LINC01088-201ENST00000437737 CDK13Q14004 1512 aaKnown RBP23.64■■□□□ 1.38
LINC01088-201ENST00000437737 EEA1Q15075 1411 aa23.63■■□□□ 1.37
LINC01088-201ENST00000437737 ARHGEF12Q9NZN5 1544 aa23.62■■□□□ 1.37
LINC01088-201ENST00000437737 PLCH2O75038 1416 aa23.61■■□□□ 1.37
LINC01088-201ENST00000437737 ATP10AO60312 1499 aa23.61■■□□□ 1.37
LINC01088-201ENST00000437737 C9orf84Q5VXU9 1444 aa23.6■■□□□ 1.37
LINC01088-201ENST00000437737 MYO5CQ9NQX4 1742 aa23.6■■□□□ 1.37
LINC01088-201ENST00000437737 CEBPAP49715 358 aaPredicted RBP23.55■■□□□ 1.36
LINC01088-201ENST00000437737 DISP3Q9P2K9 1392 aa23.53■■□□□ 1.36
LINC01088-201ENST00000437737 STRCQ7RTU9 1775 aa23.53■■□□□ 1.36
LINC01088-201ENST00000437737 EFCAB2Q5VUJ9 269 aa23.53■■□□□ 1.36
LINC01088-201ENST00000437737 ATP1B4Q9UN42 357 aaPredicted RBP23.53■■□□□ 1.36
LINC01088-201ENST00000437737 DMRT2Q9Y5R5 561 aa23.52■■□□□ 1.36
LINC01088-201ENST00000437737 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
LINC01088-201ENST00000437737 ZNF518AQ6AHZ1 1483 aa23.49■■□□□ 1.35
LINC01088-201ENST00000437737 MYT1LQ9UL68 1186 aa23.49■■□□□ 1.35
LINC01088-201ENST00000437737 KIF14Q15058 1648 aa23.48■■□□□ 1.35
LINC01088-201ENST00000437737 SETD1BQ9UPS6 1966 aaKnown RBP23.47■■□□□ 1.35
LINC01088-201ENST00000437737 ARHGAP5Q13017 1502 aa23.47■■□□□ 1.35
LINC01088-201ENST00000437737 CDK11AQ9UQ88 783 aaPredicted RBP23.46■■□□□ 1.35
LINC01088-201ENST00000437737 KDM5CP41229 1560 aa23.45■■□□□ 1.34
LINC01088-201ENST00000437737 FMN1Q68DA7 1419 aa23.45■■□□□ 1.34
LINC01088-201ENST00000437737 ILDR2Q71H61 639 aa23.45■■□□□ 1.34
LINC01088-201ENST00000437737 DIP2CQ9Y2E4 1556 aa23.44■■□□□ 1.34
LINC01088-201ENST00000437737 AFAP1Q8N556 730 aa23.43■■□□□ 1.34
LINC01088-201ENST00000437737 C3P01024 1663 aa23.42■■□□□ 1.34
LINC01088-201ENST00000437737 SOCS7O14512 581 aa23.4■■□□□ 1.34
LINC01088-201ENST00000437737 REREQ9P2R6 1566 aa23.4■■□□□ 1.34
LINC01088-201ENST00000437737 EHMT2Q96KQ7 1210 aa23.39■■□□□ 1.33
LINC01088-201ENST00000437737 ABCA6Q8N139 1617 aa23.39■■□□□ 1.33
LINC01088-201ENST00000437737 CLIP1P30622 1438 aa23.39■■□□□ 1.33
LINC01088-201ENST00000437737 TROQ12816 1431 aaPredicted RBP23.39■■□□□ 1.33
LINC01088-201ENST00000437737 SPATA31D1Q6ZQQ2 1576 aa23.39■■□□□ 1.33
LINC01088-201ENST00000437737 ESF1Q9H501 851 aaKnown RBP23.38■■□□□ 1.33
LINC01088-201ENST00000437737 PTPRTO14522 1441 aa23.37■■□□□ 1.33
LINC01088-201ENST00000437737 UBTFP17480 764 aaKnown RBP23.37■■□□□ 1.33
LINC01088-201ENST00000437737 CDC42BPBQ9Y5S2 1711 aa23.36■■□□□ 1.33
LINC01088-201ENST00000437737 ARHGAP35Q9NRY4 1499 aa23.36■■□□□ 1.33
LINC01088-201ENST00000437737 LRRIQ1Q96JM4 1722 aa23.34■■□□□ 1.33
LINC01088-201ENST00000437737 MLH3Q9UHC1 1453 aa23.33■■□□□ 1.33
LINC01088-201ENST00000437737 AGLP35573 1532 aa23.31■■□□□ 1.32
LINC01088-201ENST00000437737 ITSN2Q9NZM3 1697 aa23.31■■□□□ 1.32
LINC01088-201ENST00000437737 PREX2Q70Z35 1606 aa23.3■■□□□ 1.32
LINC01088-201ENST00000437737 TRAPPC8Q9Y2L5 1435 aa23.3■■□□□ 1.32
LINC01088-201ENST00000437737 LTBP4Q8N2S1 1624 aa23.3■■□□□ 1.32
LINC01088-201ENST00000437737 ABCC1P33527 1531 aa23.29■■□□□ 1.32
LINC01088-201ENST00000437737 IQSEC2Q5JU85 1478 aa23.26■■□□□ 1.31
LINC01088-201ENST00000437737 NCOA1Q15788 1441 aa23.25■■□□□ 1.31
LINC01088-201ENST00000437737 CNTLNQ9NXG0 1405 aa23.25■■□□□ 1.31
LINC01088-201ENST00000437737 KIDINS220Q9ULH0 1771 aa23.25■■□□□ 1.31
LINC01088-201ENST00000437737 CAMSAP1Q5T5Y3 1602 aa23.22■■□□□ 1.31
LINC01088-201ENST00000437737 CDC42BPAQ5VT25 1732 aa23.2■■□□□ 1.3
LINC01088-201ENST00000437737 MROH2AA6NES4 1674 aa23.2■■□□□ 1.3
LINC01088-201ENST00000437737 CCDC18Q5T9S5 1454 aa23.18■■□□□ 1.3
LINC01088-201ENST00000437737 NPATQ14207 1427 aa23.16■■□□□ 1.3
LINC01088-201ENST00000437737 SUPT6HQ7KZ85 1726 aaKnown RBP23.16■■□□□ 1.3
LINC01088-201ENST00000437737 SAMD9LQ8IVG5 1584 aa23.15■■□□□ 1.3
LINC01088-201ENST00000437737 ZNF777Q9ULD5 760 aaPredicted RBP23.13■■□□□ 1.29
LINC01088-201ENST00000437737 ZMYM3Q14202 1370 aa23.13■■□□□ 1.29
LINC01088-201ENST00000437737 CLTCQ00610 1675 aaKnown RBP23.13■■□□□ 1.29
LINC01088-201ENST00000437737 NCKAP5LQ9HCH0 1330 aa23.12■■□□□ 1.29
LINC01088-201ENST00000437737 CASKIN1Q8WXD9 1431 aa23.12■■□□□ 1.29
LINC01088-201ENST00000437737 MYO3AQ8NEV4 1616 aa23.11■■□□□ 1.29
LINC01088-201ENST00000437737 SYCP2Q9BX26 1530 aa23.11■■□□□ 1.29
LINC01088-201ENST00000437737 ZNF335Q9H4Z2 1342 aaPredicted RBP23.1■■□□□ 1.29
LINC01088-201ENST00000437737 UBAP1LF5GYI3 381 aa23.1■■□□□ 1.29
LINC01088-201ENST00000437737 ZNF142P52746 1687 aaPredicted RBP23.09■■□□□ 1.29
LINC01088-201ENST00000437737 SPAG9O60271 1321 aaKnown RBP23.08■■□□□ 1.29
LINC01088-201ENST00000437737 ATP7AQ04656 1500 aa23.06■■□□□ 1.28
LINC01088-201ENST00000437737 CEP170BQ9Y4F5 1589 aaPredicted RBP23.06■■□□□ 1.28
LINC01088-201ENST00000437737 PLA2R1Q13018 1463 aa23.05■■□□□ 1.28
LINC01088-201ENST00000437737 HNRNPMP52272 730 aaKnown RBP eCLIP23.04■■□□□ 1.28
LINC01088-201ENST00000437737 PKD2Q13563 968 aa23.04■■□□□ 1.28
LINC01088-201ENST00000437737 PLXNC1O60486 1568 aa23.03■■□□□ 1.28
LINC01088-201ENST00000437737 INO80Q9ULG1 1556 aaPredicted RBP23.02■■□□□ 1.28
LINC01088-201ENST00000437737 A2MP01023 1474 aa23.02■■□□□ 1.28
LINC01088-201ENST00000437737 FYCO1Q9BQS8 1478 aa23.02■■□□□ 1.28
LINC01088-201ENST00000437737 GPATCH8Q9UKJ3 1502 aaKnown RBP23.02■■□□□ 1.28
LINC01088-201ENST00000437737 PTPRKQ15262 1439 aa23.01■■□□□ 1.27
LINC01088-201ENST00000437737 TCOF1Q13428 1488 aaKnown RBP23■■□□□ 1.27
LINC01088-201ENST00000437737 GGT6Q6P531 493 aa23■■□□□ 1.27
LINC01088-201ENST00000437737 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
LINC01088-201ENST00000437737 PPP6R1Q9UPN7 881 aa22.98■■□□□ 1.27
LINC01088-201ENST00000437737 KIAA1107Q9UPP5 1409 aa22.97■■□□□ 1.27
LINC01088-201ENST00000437737 ADGBQ8N7X0 1667 aa22.97■■□□□ 1.27
LINC01088-201ENST00000437737 CFDP1Q9UEE9 299 aaPredicted RBP22.96■■□□□ 1.27
LINC01088-201ENST00000437737 SCAF1Q9H7N4 1312 aaKnown RBP22.94■■□□□ 1.26
LINC01088-201ENST00000437737 CCNB3Q8WWL7 1395 aa22.93■■□□□ 1.26
LINC01088-201ENST00000437737 DNMT1P26358 1616 aaKnown RBP22.92■■□□□ 1.26
LINC01088-201ENST00000437737 A2ML1A8K2U0 1454 aa22.92■■□□□ 1.26
LINC01088-201ENST00000437737 POLR1AO95602 1720 aaPredicted RBP22.91■■□□□ 1.26
LINC01088-201ENST00000437737 CHIC1Q5VXU3 224 aa22.9■■□□□ 1.26
LINC01088-201ENST00000437737 MED1Q15648 1581 aaPredicted RBP22.89■■□□□ 1.25
LINC01088-201ENST00000437737 PIP4K2BP78356 416 aa22.88■■□□□ 1.25
LINC01088-201ENST00000437737 HSPA1LP34931 641 aa22.86■■□□□ 1.25
LINC01088-201ENST00000437737 CPS1P31327 1500 aa22.86■■□□□ 1.25
LINC01088-201ENST00000437737 TOM1O60784 492 aa22.85■■□□□ 1.25
LINC01088-201ENST00000437737 MTUS2Q5JR59 1369 aa22.85■■□□□ 1.25
LINC01088-201ENST00000437737 NEURL4Q96JN8 1562 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms