RNA–Protein interactions for RNA: ENST00000429747.5

CPNE4-201, Transcript of copine 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE4, Length 4,184 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-201ENST00000429747 ZNF644Q9H582 1327 aaPredicted RBP16.57■□□□□ 0.24
CPNE4-201ENST00000429747 ST20-MTHFSA0A0A6YYL1 179 aa16.56■□□□□ 0.24
CPNE4-201ENST00000429747 IPO9Q96P70 1041 aaKnown RBP16.56■□□□□ 0.24
CPNE4-201ENST00000429747 PDS5BQ9NTI5 1447 aa16.56■□□□□ 0.24
CPNE4-201ENST00000429747 NCOA2Q15596 1464 aa16.55■□□□□ 0.24
CPNE4-201ENST00000429747 NEUROD2Q15784 382 aa16.55■□□□□ 0.24
CPNE4-201ENST00000429747 RALBP1Q15311 655 aa16.55■□□□□ 0.24
CPNE4-201ENST00000429747 KTN1Q86UP2 1357 aaKnown RBP16.54■□□□□ 0.24
CPNE4-201ENST00000429747 ROCK2O75116 1388 aaKnown RBP16.54■□□□□ 0.24
CPNE4-201ENST00000429747 TMF1P82094 1093 aa16.54■□□□□ 0.24
CPNE4-201ENST00000429747 SENP3Q9H4L4 574 aaPredicted RBP16.54■□□□□ 0.24
CPNE4-201ENST00000429747 CNTLNQ9NXG0 1405 aa16.54■□□□□ 0.24
CPNE4-201ENST00000429747 ANKRD30AQ9BXX3 1397 aa16.53■□□□□ 0.24
CPNE4-201ENST00000429747 USP47Q96K76 1375 aa16.52■□□□□ 0.24
CPNE4-201ENST00000429747 FYCO1Q9BQS8 1478 aa16.52■□□□□ 0.24
CPNE4-201ENST00000429747 TCERG1O14776 1098 aaKnown RBP16.51■□□□□ 0.23
CPNE4-201ENST00000429747 CDCA8Q53HL2 280 aa16.5■□□□□ 0.23
CPNE4-201ENST00000429747 NLRP13Q86W25 1043 aa16.5■□□□□ 0.23
CPNE4-201ENST00000429747 NBPF8Q3BBV2 869 aa16.5■□□□□ 0.23
CPNE4-201ENST00000429747 EXOC6Q8TAG9 804 aa16.5■□□□□ 0.23
CPNE4-201ENST00000429747 HFM1A2PYH4 1435 aa16.5■□□□□ 0.23
CPNE4-201ENST00000429747 HNRNPMP52272 730 aaKnown RBP eCLIP16.49■□□□□ 0.23
CPNE4-201ENST00000429747 GAPVD1Q14C86 1478 aa16.48■□□□□ 0.23
CPNE4-201ENST00000429747 TNNT2P45379 298 aaPredicted RBP16.48■□□□□ 0.23
CPNE4-201ENST00000429747 HSP90AA1P07900 732 aaKnown RBP16.48■□□□□ 0.23
CPNE4-201ENST00000429747 FRAT1Q92837 279 aaPredicted RBP16.48■□□□□ 0.23
CPNE4-201ENST00000429747 PLIN1O60240 522 aa16.47■□□□□ 0.23
CPNE4-201ENST00000429747 PEG3Q9GZU2 1588 aa16.47■□□□□ 0.23
CPNE4-201ENST00000429747 MYBBP1AQ9BQG0 1328 aaKnown RBP16.45■□□□□ 0.22
CPNE4-201ENST00000429747 KIF15Q9NS87 1388 aa16.45■□□□□ 0.22
CPNE4-201ENST00000429747 MAPKBP1O60336 1514 aa16.45■□□□□ 0.22
CPNE4-201ENST00000429747 BECN1Q14457 450 aa16.44■□□□□ 0.22
CPNE4-201ENST00000429747 NAIPQ13075 1403 aa16.44■□□□□ 0.22
CPNE4-201ENST00000429747 MSH5O43196 834 aa16.44■□□□□ 0.22
CPNE4-201ENST00000429747 RRP1P56182 461 aaKnown RBP16.44■□□□□ 0.22
CPNE4-201ENST00000429747 C11orf95C9JLR9 678 aaPredicted RBP16.43■□□□□ 0.22
CPNE4-201ENST00000429747 HMGXB3Q12766 1538 aa16.42■□□□□ 0.22
CPNE4-201ENST00000429747 PDE4AP27815 886 aa16.42■□□□□ 0.22
CPNE4-201ENST00000429747 PCF11O94913 1555 aaKnown RBP16.41■□□□□ 0.22
CPNE4-201ENST00000429747 PDE3BQ13370 1112 aa16.41■□□□□ 0.22
CPNE4-201ENST00000429747 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.4■□□□□ 0.22
CPNE4-201ENST00000429747 CARMIL2Q6F5E8 1435 aa16.39■□□□□ 0.21
CPNE4-201ENST00000429747 AKNAQ7Z591 1439 aa16.39■□□□□ 0.21
CPNE4-201ENST00000429747 PANK3Q9H999 370 aa16.38■□□□□ 0.21
CPNE4-201ENST00000429747 UNC13AQ9UPW8 1703 aa16.38■□□□□ 0.21
CPNE4-201ENST00000429747 JPH4Q96JJ6 628 aa16.38■□□□□ 0.21
CPNE4-201ENST00000429747 NESP48681 1621 aa16.38■□□□□ 0.21
CPNE4-201ENST00000429747 POLA1P09884 1462 aaPredicted RBP16.37■□□□□ 0.21
CPNE4-201ENST00000429747 ERCC6Q03468 1493 aa16.37■□□□□ 0.21
CPNE4-201ENST00000429747 EFCAB5A4FU69 1503 aa16.37■□□□□ 0.21
CPNE4-201ENST00000429747 PAK3O75914 559 aaPredicted RBP16.37■□□□□ 0.21
CPNE4-201ENST00000429747 MAP3K1Q13233 1512 aa16.37■□□□□ 0.21
CPNE4-201ENST00000429747 SLC24A1O60721 1099 aa16.35■□□□□ 0.21
CPNE4-201ENST00000429747 SLC4A3P48751 1232 aa16.35■□□□□ 0.21
CPNE4-201ENST00000429747 CCDC146Q8IYE0 955 aa16.35■□□□□ 0.21
CPNE4-201ENST00000429747 CRBNQ96SW2 442 aa16.35■□□□□ 0.21
CPNE4-201ENST00000429747 BIVM-ERCC5R4GMW8 1640 aa16.35■□□□□ 0.21
CPNE4-201ENST00000429747 CFAP53Q96M91 514 aa16.35■□□□□ 0.21
CPNE4-201ENST00000429747 FTSJ3Q8IY81 847 aaKnown RBP16.34■□□□□ 0.21
CPNE4-201ENST00000429747 STAG3Q9UJ98 1225 aa16.34■□□□□ 0.21
CPNE4-201ENST00000429747 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.21
CPNE4-201ENST00000429747 GOLGA2Q08379 1002 aa16.33■□□□□ 0.21
CPNE4-201ENST00000429747 TOPBP1Q92547 1522 aa16.33■□□□□ 0.2
CPNE4-201ENST00000429747 NPM1P06748 294 aaKnown RBP eCLIP16.32■□□□□ 0.2
CPNE4-201ENST00000429747 CDCA7LQ96GN5 454 aa16.31■□□□□ 0.2
CPNE4-201ENST00000429747 PNISRQ8TF01 805 aaKnown RBP16.3■□□□□ 0.2
CPNE4-201ENST00000429747 CCDC144AA2RUR9 1427 aa16.3■□□□□ 0.2
CPNE4-201ENST00000429747 PTPRKQ15262 1439 aa16.29■□□□□ 0.2
CPNE4-201ENST00000429747 ANP32BQ92688 251 aaKnown RBP16.29■□□□□ 0.2
CPNE4-201ENST00000429747 SPRYD3Q8NCJ5 442 aa16.28■□□□□ 0.2
CPNE4-201ENST00000429747 EHBP1L1Q8N3D4 1523 aa16.28■□□□□ 0.2
CPNE4-201ENST00000429747 SLKQ9H2G2 1235 aaPredicted RBP16.28■□□□□ 0.2
CPNE4-201ENST00000429747 MORC1Q86VD1 984 aa16.28■□□□□ 0.2
CPNE4-201ENST00000429747 ANKRD50Q9ULJ7 1429 aa16.27■□□□□ 0.2
CPNE4-201ENST00000429747 U2SURPO15042 1029 aaKnown RBP16.27■□□□□ 0.19
CPNE4-201ENST00000429747 ARID4BQ4LE39 1312 aaPredicted RBP16.27■□□□□ 0.19
CPNE4-201ENST00000429747 MIA2Q96PC5 1412 aa16.25■□□□□ 0.19
CPNE4-201ENST00000429747 MS4A1P11836 297 aa16.24■□□□□ 0.19
CPNE4-201ENST00000429747 ABCA10Q8WWZ4 1543 aa16.23■□□□□ 0.19
CPNE4-201ENST00000429747 BRD4O60885 1362 aaPredicted RBP16.23■□□□□ 0.19
CPNE4-201ENST00000429747 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.23■□□□□ 0.19
CPNE4-201ENST00000429747 SAFB2Q14151 953 aaKnown RBP eCLIP16.23■□□□□ 0.19
CPNE4-201ENST00000429747 RSPH4AQ5TD94 716 aa16.23■□□□□ 0.19
CPNE4-201ENST00000429747 CLUAP1Q96AJ1 413 aa16.23■□□□□ 0.19
CPNE4-201ENST00000429747 SMG6Q86US8 1419 aaKnown RBP16.23■□□□□ 0.19
CPNE4-201ENST00000429747 ANKRD30BQ9BXX2 1392 aa16.22■□□□□ 0.19
CPNE4-201ENST00000429747 MAPK8IP3Q9UPT6 1336 aa16.22■□□□□ 0.19
CPNE4-201ENST00000429747 NBPF1Q3BBV0 1214 aa16.22■□□□□ 0.19
CPNE4-201ENST00000429747 CENPQQ7L2Z9 268 aaPredicted RBP16.22■□□□□ 0.19
CPNE4-201ENST00000429747 EFCAB2Q5VUJ9 269 aa16.22■□□□□ 0.19
CPNE4-201ENST00000429747 USP35Q9P2H5 1018 aa16.22■□□□□ 0.19
CPNE4-201ENST00000429747 CDK13Q14004 1512 aaKnown RBP16.22■□□□□ 0.19
CPNE4-201ENST00000429747 APAF1O14727 1248 aa16.21■□□□□ 0.19
CPNE4-201ENST00000429747 DAPK1P53355 1430 aa16.2■□□□□ 0.18
CPNE4-201ENST00000429747 FAM161AQ3B820 660 aa16.2■□□□□ 0.18
CPNE4-201ENST00000429747 SUPT6HQ7KZ85 1726 aaKnown RBP16.2■□□□□ 0.18
CPNE4-201ENST00000429747 MYH16Q9H6N6 1097 aa16.2■□□□□ 0.18
CPNE4-201ENST00000429747 PTPN23Q9H3S7 1636 aa16.19■□□□□ 0.18
CPNE4-201ENST00000429747 DNMBPQ6XZF7 1577 aa16.19■□□□□ 0.18
CPNE4-201ENST00000429747 NCOA1Q15788 1441 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms