RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 LAS1LQ9Y4W2 734 aaKnown RBP16.84■□□□□ 0.29
CDH3-202ENST00000429102 GAPVD1Q14C86 1478 aa16.84■□□□□ 0.29
CDH3-202ENST00000429102 ANP32AP39687 249 aaKnown RBP16.83■□□□□ 0.29
CDH3-202ENST00000429102 RTL5Q5HYW3 569 aaPredicted RBP16.83■□□□□ 0.28
CDH3-202ENST00000429102 DCAF11Q8TEB1 546 aa16.83■□□□□ 0.28
CDH3-202ENST00000429102 CC2D2AQ9P2K1 1620 aa16.81■□□□□ 0.28
CDH3-202ENST00000429102 PLIN1O60240 522 aa16.81■□□□□ 0.28
CDH3-202ENST00000429102 SNAPC4Q5SXM2 1469 aa16.81■□□□□ 0.28
CDH3-202ENST00000429102 ST20-MTHFSA0A0A6YYL1 179 aa16.81■□□□□ 0.28
CDH3-202ENST00000429102 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
CDH3-202ENST00000429102 CC2D1BQ5T0F9 858 aaKnown RBP16.8■□□□□ 0.28
CDH3-202ENST00000429102 ZBTB47Q9UFB7 747 aaPredicted RBP16.8■□□□□ 0.28
CDH3-202ENST00000429102 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.8■□□□□ 0.28
CDH3-202ENST00000429102 KDM6BO15054 1643 aa16.79■□□□□ 0.28
CDH3-202ENST00000429102 NUDCQ9Y266 331 aa16.79■□□□□ 0.28
CDH3-202ENST00000429102 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
CDH3-202ENST00000429102 EXOC6Q8TAG9 804 aa16.78■□□□□ 0.28
CDH3-202ENST00000429102 MAGI3Q5TCQ9 1506 aa16.76■□□□□ 0.27
CDH3-202ENST00000429102 USP47Q96K76 1375 aa16.75■□□□□ 0.27
CDH3-202ENST00000429102 EFCAB5A4FU69 1503 aa16.75■□□□□ 0.27
CDH3-202ENST00000429102 URB2Q14146 1524 aaKnown RBP16.74■□□□□ 0.27
CDH3-202ENST00000429102 CDCA7LQ96GN5 454 aa16.74■□□□□ 0.27
CDH3-202ENST00000429102 DENND4BO75064 1496 aaPredicted RBP16.74■□□□□ 0.27
CDH3-202ENST00000429102 ANKRD30BQ9BXX2 1392 aa16.73■□□□□ 0.27
CDH3-202ENST00000429102 DNMBPQ6XZF7 1577 aa16.73■□□□□ 0.27
CDH3-202ENST00000429102 NCOA1Q15788 1441 aa16.72■□□□□ 0.27
CDH3-202ENST00000429102 HNRNPMP52272 730 aaKnown RBP eCLIP16.72■□□□□ 0.27
CDH3-202ENST00000429102 CHMP7Q8WUX9 453 aaPredicted RBP16.72■□□□□ 0.27
CDH3-202ENST00000429102 GRIN2BQ13224 1484 aa16.71■□□□□ 0.27
CDH3-202ENST00000429102 KDM5BQ9UGL1 1544 aa16.7■□□□□ 0.26
CDH3-202ENST00000429102 NUP155O75694 1391 aa16.7■□□□□ 0.26
CDH3-202ENST00000429102 PNISRQ8TF01 805 aaKnown RBP16.69■□□□□ 0.26
CDH3-202ENST00000429102 SLC4A3P48751 1232 aa16.69■□□□□ 0.26
CDH3-202ENST00000429102 ERICH6BQ5W0A0 696 aa16.68■□□□□ 0.26
CDH3-202ENST00000429102 TSPY4P0CV99 314 aa16.68■□□□□ 0.26
CDH3-202ENST00000429102 TSPY10P0CW01 314 aa16.68■□□□□ 0.26
CDH3-202ENST00000429102 EPRSP07814 1512 aaKnown RBP16.68■□□□□ 0.26
CDH3-202ENST00000429102 PRG4Q92954 1404 aaPredicted RBP16.68■□□□□ 0.26
CDH3-202ENST00000429102 SUPT6HQ7KZ85 1726 aaKnown RBP16.67■□□□□ 0.26
CDH3-202ENST00000429102 IPO9Q96P70 1041 aaKnown RBP16.66■□□□□ 0.26
CDH3-202ENST00000429102 NBPF1Q3BBV0 1214 aa16.65■□□□□ 0.26
CDH3-202ENST00000429102 RCAN3Q9UKA8 241 aa16.65■□□□□ 0.26
CDH3-202ENST00000429102 THOC2Q8NI27 1593 aaKnown RBP16.65■□□□□ 0.26
CDH3-202ENST00000429102 ABCC5O15440 1437 aa16.65■□□□□ 0.26
CDH3-202ENST00000429102 EHBP1L1Q8N3D4 1523 aa16.65■□□□□ 0.26
CDH3-202ENST00000429102 DAPK1P53355 1430 aa16.64■□□□□ 0.25
CDH3-202ENST00000429102 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
CDH3-202ENST00000429102 UGGT2Q9NYU1 1516 aa16.63■□□□□ 0.25
CDH3-202ENST00000429102 PLEKHD1A6NEE1 506 aa16.62■□□□□ 0.25
CDH3-202ENST00000429102 NEFMP07197 916 aa16.62■□□□□ 0.25
CDH3-202ENST00000429102 RRP1P56182 461 aaKnown RBP16.6■□□□□ 0.25
CDH3-202ENST00000429102 PRDM2Q13029 1718 aa16.6■□□□□ 0.25
CDH3-202ENST00000429102 RPRD2Q5VT52 1461 aaKnown RBP16.6■□□□□ 0.25
CDH3-202ENST00000429102 MYT1LQ9UL68 1186 aa16.59■□□□□ 0.25
CDH3-202ENST00000429102 DHX29Q7Z478 1369 aaKnown RBP16.58■□□□□ 0.24
CDH3-202ENST00000429102 PDE4AP27815 886 aa16.58■□□□□ 0.24
CDH3-202ENST00000429102 ROCK2O75116 1388 aaKnown RBP16.58■□□□□ 0.24
CDH3-202ENST00000429102 LRRIQ1Q96JM4 1722 aa16.57■□□□□ 0.24
CDH3-202ENST00000429102 CTTNBP2Q8WZ74 1663 aa16.57■□□□□ 0.24
CDH3-202ENST00000429102 RGS3P49796 1198 aa16.57■□□□□ 0.24
CDH3-202ENST00000429102 IL27Q8NEV9 243 aa16.57■□□□□ 0.24
CDH3-202ENST00000429102 CRBNQ96SW2 442 aa16.56■□□□□ 0.24
CDH3-202ENST00000429102 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.56■□□□□ 0.24
CDH3-202ENST00000429102 CUL7Q14999 1698 aa16.56■□□□□ 0.24
CDH3-202ENST00000429102 SMG6Q86US8 1419 aaKnown RBP16.56■□□□□ 0.24
CDH3-202ENST00000429102 DAXXQ9UER7 740 aaPredicted RBP16.55■□□□□ 0.24
CDH3-202ENST00000429102 PANK3Q9H999 370 aa16.55■□□□□ 0.24
CDH3-202ENST00000429102 C20orf194Q5TEA3 1177 aa16.55■□□□□ 0.24
CDH3-202ENST00000429102 ZNF608Q9ULD9 1512 aaPredicted RBP16.53■□□□□ 0.24
CDH3-202ENST00000429102 MYBBP1AQ9BQG0 1328 aaKnown RBP16.53■□□□□ 0.24
CDH3-202ENST00000429102 SPATA31E1Q6ZUB1 1445 aa16.53■□□□□ 0.24
CDH3-202ENST00000429102 MIA2Q96PC5 1412 aa16.52■□□□□ 0.24
CDH3-202ENST00000429102 CCDC146Q8IYE0 955 aa16.52■□□□□ 0.24
CDH3-202ENST00000429102 JPH4Q96JJ6 628 aa16.52■□□□□ 0.24
CDH3-202ENST00000429102 TEX14Q8IWB6 1497 aa16.52■□□□□ 0.23
CDH3-202ENST00000429102 ANKRD30AQ9BXX3 1397 aa16.51■□□□□ 0.23
CDH3-202ENST00000429102 PLB1Q6P1J6 1458 aa16.51■□□□□ 0.23
CDH3-202ENST00000429102 EIF5BO60841 1220 aaKnown RBP16.51■□□□□ 0.23
CDH3-202ENST00000429102 ARXQ96QS3 562 aa16.51■□□□□ 0.23
CDH3-202ENST00000429102 ANKRD50Q9ULJ7 1429 aa16.5■□□□□ 0.23
CDH3-202ENST00000429102 KIF15Q9NS87 1388 aa16.5■□□□□ 0.23
CDH3-202ENST00000429102 NLRP13Q86W25 1043 aa16.49■□□□□ 0.23
CDH3-202ENST00000429102 LAMC3Q9Y6N6 1575 aa16.49■□□□□ 0.23
CDH3-202ENST00000429102 ANO8Q9HCE9 1232 aaPredicted RBP16.49■□□□□ 0.23
CDH3-202ENST00000429102 NEUROD2Q15784 382 aa16.49■□□□□ 0.23
CDH3-202ENST00000429102 SAMD9Q5K651 1589 aa16.48■□□□□ 0.23
CDH3-202ENST00000429102 KIAA1107Q9UPP5 1409 aa16.48■□□□□ 0.23
CDH3-202ENST00000429102 TCOF1Q13428 1488 aaKnown RBP16.48■□□□□ 0.23
CDH3-202ENST00000429102 TNNT2P45379 298 aaPredicted RBP16.47■□□□□ 0.23
CDH3-202ENST00000429102 RALBP1Q15311 655 aa16.47■□□□□ 0.23
CDH3-202ENST00000429102 KTN1Q86UP2 1357 aaKnown RBP16.47■□□□□ 0.23
CDH3-202ENST00000429102 HECW1Q76N89 1606 aa16.46■□□□□ 0.23
CDH3-202ENST00000429102 ADAMTS8Q9UP79 889 aa16.46■□□□□ 0.23
CDH3-202ENST00000429102 IQGAP2Q13576 1575 aa16.46■□□□□ 0.23
CDH3-202ENST00000429102 WDR43Q15061 677 aaKnown RBP eCLIP16.45■□□□□ 0.22
CDH3-202ENST00000429102 PZPP20742 1482 aa16.45■□□□□ 0.22
CDH3-202ENST00000429102 NUP153P49790 1475 aaKnown RBP16.43■□□□□ 0.22
CDH3-202ENST00000429102 ROCK1Q13464 1354 aa16.43■□□□□ 0.22
CDH3-202ENST00000429102 TCERG1O14776 1098 aaKnown RBP16.43■□□□□ 0.22
CDH3-202ENST00000429102 CAMSAP2Q08AD1 1489 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms