RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 NCOA1Q15788 1441 aa8.04□□□□□ -1.12
CCDC88A-203ENST00000412148 RPRD2Q5VT52 1461 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-203ENST00000412148 KDM6BO15054 1643 aa8.03□□□□□ -1.12
CCDC88A-203ENST00000412148 TEX14Q8IWB6 1497 aa8.03□□□□□ -1.12
CCDC88A-203ENST00000412148 PIAS4Q8N2W9 510 aaPredicted RBP8.02□□□□□ -1.13
CCDC88A-203ENST00000412148 FKBP8Q14318 412 aa8.01□□□□□ -1.13
CCDC88A-203ENST00000412148 KIAA0556O60303 1618 aa8.01□□□□□ -1.13
CCDC88A-203ENST00000412148 SPATA31E1Q6ZUB1 1445 aa8.01□□□□□ -1.13
CCDC88A-203ENST00000412148 KIF14Q15058 1648 aa8.01□□□□□ -1.13
CCDC88A-203ENST00000412148 FANCIQ9NVI1 1328 aa8.01□□□□□ -1.13
CCDC88A-203ENST00000412148 MBD5Q9P267 1494 aa8□□□□□ -1.13
CCDC88A-203ENST00000412148 RAPGEF6Q8TEU7 1601 aa8□□□□□ -1.13
CCDC88A-203ENST00000412148 ADGRL2O95490 1459 aa8□□□□□ -1.13
CCDC88A-203ENST00000412148 TAOK2Q9UL54 1235 aa7.99□□□□□ -1.13
CCDC88A-203ENST00000412148 DAPK1P53355 1430 aa7.98□□□□□ -1.13
CCDC88A-203ENST00000412148 ANKRD30BQ9BXX2 1392 aa7.98□□□□□ -1.13
CCDC88A-203ENST00000412148 RBM19Q9Y4C8 960 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-203ENST00000412148 KDM5DQ9BY66 1539 aa7.97□□□□□ -1.13
CCDC88A-203ENST00000412148 E9PCH4 1651 aa7.97□□□□□ -1.13
CCDC88A-203ENST00000412148 TULP1O00294 542 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-203ENST00000412148 ARID4BQ4LE39 1312 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-203ENST00000412148 WASHC2AQ641Q2 1341 aa7.97□□□□□ -1.13
CCDC88A-203ENST00000412148 KIAA0586Q9BVV6 1533 aa7.96□□□□□ -1.13
CCDC88A-203ENST00000412148 CCDC7Q96M83 1385 aa7.96□□□□□ -1.13
CCDC88A-203ENST00000412148 KDM5CP41229 1560 aa7.96□□□□□ -1.14
CCDC88A-203ENST00000412148 ARHGEF12Q9NZN5 1544 aa7.96□□□□□ -1.14
CCDC88A-203ENST00000412148 P3H3Q8IVL6 736 aa7.96□□□□□ -1.14
CCDC88A-203ENST00000412148 NPM3O75607 178 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 EIF4G2P78344 907 aaKnown RBP eCLIP7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 DISP1Q96F81 1524 aa7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 TPRNQ4KMQ1 711 aa7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 MRC2Q9UBG0 1479 aa7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 SHANK2Q9UPX8 1470 aa7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 ZBED9Q6R2W3 1325 aa7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 CDK13Q14004 1512 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-203ENST00000412148 ABCC5O15440 1437 aa7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 MYT1LQ9UL68 1186 aa7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 TDRD9Q8NDG6 1382 aaKnown RBP7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 UHRF1BP1Q6BDS2 1440 aa7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 IFT140Q96RY7 1462 aa7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 PZPP20742 1482 aa7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 NUP153P49790 1475 aaKnown RBP7.94□□□□□ -1.14
CCDC88A-203ENST00000412148 HSPA5P11021 654 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-203ENST00000412148 LAMC1P11047 1609 aa7.93□□□□□ -1.14
CCDC88A-203ENST00000412148 BCORL1Q5H9F3 1711 aa7.93□□□□□ -1.14
CCDC88A-203ENST00000412148 CDC42BPAQ5VT25 1732 aa7.93□□□□□ -1.14
CCDC88A-203ENST00000412148 MPHOSPH9Q99550 1183 aa7.92□□□□□ -1.14
CCDC88A-203ENST00000412148 ZMYM4Q5VZL5 1548 aa7.92□□□□□ -1.14
CCDC88A-203ENST00000412148 KTN1Q86UP2 1357 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-203ENST00000412148 PPP4R2Q9NY27 417 aa7.92□□□□□ -1.14
CCDC88A-203ENST00000412148 SMG6Q86US8 1419 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-203ENST00000412148 RNF123Q5XPI4 1314 aa7.91□□□□□ -1.14
CCDC88A-203ENST00000412148 TRIM52Q96A61 297 aa7.91□□□□□ -1.14
CCDC88A-203ENST00000412148 PRKRIP1Q9H875 184 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-203ENST00000412148 ARHGEF5Q12774 1597 aa7.91□□□□□ -1.14
CCDC88A-203ENST00000412148 CEP170Q5SW79 1584 aa7.91□□□□□ -1.14
CCDC88A-203ENST00000412148 RALGAPBQ86X10 1494 aa7.9□□□□□ -1.14
CCDC88A-203ENST00000412148 TROQ12816 1431 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-203ENST00000412148 ROCK2O75116 1388 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-203ENST00000412148 CAMSAP2Q08AD1 1489 aa7.9□□□□□ -1.14
CCDC88A-203ENST00000412148 ATP1B4Q9UN42 357 aaPredicted RBP7.9□□□□□ -1.15
CCDC88A-203ENST00000412148 GRIN2AQ12879 1464 aa7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 KIAA1107Q9UPP5 1409 aa7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 EIF4G3O43432 1585 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 HNRNPUQ00839 825 aaKnown RBP eCLIP7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 CDK11AQ9UQ88 783 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 MAGI1Q96QZ7 1491 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 INSRP06213 1382 aa7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 DHX29Q7Z478 1369 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 L3MBTL2Q969R5 705 aa7.89□□□□□ -1.15
CCDC88A-203ENST00000412148 PTPRGP23470 1445 aa7.88□□□□□ -1.15
CCDC88A-203ENST00000412148 MSH5O43196 834 aa7.88□□□□□ -1.15
CCDC88A-203ENST00000412148 BCANQ96GW7 911 aa7.88□□□□□ -1.15
CCDC88A-203ENST00000412148 HIRIP3Q9BW71 556 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-203ENST00000412148 GPATCH8Q9UKJ3 1502 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-203ENST00000412148 ABCA8O94911 1581 aa7.87□□□□□ -1.15
CCDC88A-203ENST00000412148 MAST1Q9Y2H9 1570 aa7.87□□□□□ -1.15
CCDC88A-203ENST00000412148 POTEDQ86YR6 584 aa7.86□□□□□ -1.15
CCDC88A-203ENST00000412148 KIF7Q2M1P5 1343 aa7.86□□□□□ -1.15
CCDC88A-203ENST00000412148 TRPM1Q7Z4N2 1603 aa7.86□□□□□ -1.15
CCDC88A-203ENST00000412148 RRP7BPQ9NSQ0 103 aa7.85□□□□□ -1.15
CCDC88A-203ENST00000412148 UNC13BO14795 1591 aa7.85□□□□□ -1.15
CCDC88A-203ENST00000412148 ABCC10Q5T3U5 1492 aa7.85□□□□□ -1.15
CCDC88A-203ENST00000412148 HAP1P54257 671 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-203ENST00000412148 LRPPRCP42704 1394 aaKnown RBP7.84□□□□□ -1.15
CCDC88A-203ENST00000412148 NBPF8Q3BBV2 869 aa7.84□□□□□ -1.15
CCDC88A-203ENST00000412148 NUP160Q12769 1436 aa7.84□□□□□ -1.15
CCDC88A-203ENST00000412148 C11orf95C9JLR9 678 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-203ENST00000412148 PLCB2Q00722 1185 aa7.84□□□□□ -1.15
CCDC88A-203ENST00000412148 PREX2Q70Z35 1606 aa7.84□□□□□ -1.16
CCDC88A-203ENST00000412148 SYNJ2O15056 1496 aa7.83□□□□□ -1.16
CCDC88A-203ENST00000412148 ANKRD30AQ9BXX3 1397 aa7.83□□□□□ -1.16
CCDC88A-203ENST00000412148 EIF2AK4Q9P2K8 1649 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-203ENST00000412148 MYO5CQ9NQX4 1742 aa7.82□□□□□ -1.16
CCDC88A-203ENST00000412148 PLXNC1O60486 1568 aa7.82□□□□□ -1.16
CCDC88A-203ENST00000412148 USP47Q96K76 1375 aa7.82□□□□□ -1.16
CCDC88A-203ENST00000412148 CDC42BPBQ9Y5S2 1711 aa7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 MRS2Q9HD23 443 aa7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 RNF17Q9BXT8 1623 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 BRD4O60885 1362 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms