RNA–Protein interactions for RNA: ENST00000410828.1

RNU4-53P-201, Transcript of RNA, U4 small nuclear 53, pseudogene, humanhuman

BASIC

Gene RNU4-53P, Length 140 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-53P-201ENST00000410828 UBAP1LF5GYI3 381 aa4□□□□□ -1.77
RNU4-53P-201ENST00000410828 CDK11AQ9UQ88 783 aaPredicted RBP4□□□□□ -1.77
RNU4-53P-201ENST00000410828 PLCH2O75038 1416 aa4□□□□□ -1.77
RNU4-53P-201ENST00000410828 C9orf84Q5VXU9 1444 aa4□□□□□ -1.77
RNU4-53P-201ENST00000410828 SPATA31D1Q6ZQQ2 1576 aa4□□□□□ -1.77
RNU4-53P-201ENST00000410828 ZMYM4Q5VZL5 1548 aa4□□□□□ -1.77
RNU4-53P-201ENST00000410828 TRAPPC8Q9Y2L5 1435 aa3.99□□□□□ -1.77
RNU4-53P-201ENST00000410828 AFAP1Q8N556 730 aa3.99□□□□□ -1.77
RNU4-53P-201ENST00000410828 SETD1BQ9UPS6 1966 aaKnown RBP3.99□□□□□ -1.77
RNU4-53P-201ENST00000410828 ARHGEF12Q9NZN5 1544 aa3.99□□□□□ -1.77
RNU4-53P-201ENST00000410828 RAPGEF6Q8TEU7 1601 aa3.99□□□□□ -1.77
RNU4-53P-201ENST00000410828 IQSEC2Q5JU85 1478 aa3.98□□□□□ -1.77
RNU4-53P-201ENST00000410828 TTC37Q6PGP7 1564 aa3.98□□□□□ -1.77
RNU4-53P-201ENST00000410828 CTTNBP2Q8WZ74 1663 aa3.98□□□□□ -1.77
RNU4-53P-201ENST00000410828 ATP1B4Q9UN42 357 aaPredicted RBP3.98□□□□□ -1.77
RNU4-53P-201ENST00000410828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.98□□□□□ -1.77
RNU4-53P-201ENST00000410828 HECW1Q76N89 1606 aa3.98□□□□□ -1.77
RNU4-53P-201ENST00000410828 ZNF335Q9H4Z2 1342 aaPredicted RBP3.97□□□□□ -1.77
RNU4-53P-201ENST00000410828 TOM1O60784 492 aa3.97□□□□□ -1.77
RNU4-53P-201ENST00000410828 PKD2Q13563 968 aa3.97□□□□□ -1.77
RNU4-53P-201ENST00000410828 RICTORQ6R327 1708 aa3.97□□□□□ -1.77
RNU4-53P-201ENST00000410828 ZNF518AQ6AHZ1 1483 aa3.97□□□□□ -1.77
RNU4-53P-201ENST00000410828 CFAP74Q9C0B2 1584 aa3.97□□□□□ -1.77
RNU4-53P-201ENST00000410828 SCAF1Q9H7N4 1312 aaKnown RBP3.96□□□□□ -1.77
RNU4-53P-201ENST00000410828 NCKAP5LQ9HCH0 1330 aa3.96□□□□□ -1.77
RNU4-53P-201ENST00000410828 NCOA1Q15788 1441 aa3.96□□□□□ -1.77
RNU4-53P-201ENST00000410828 CNTLNQ9NXG0 1405 aa3.96□□□□□ -1.77
RNU4-53P-201ENST00000410828 LTBP4Q8N2S1 1624 aa3.96□□□□□ -1.78
RNU4-53P-201ENST00000410828 HSPA1LP34931 641 aa3.96□□□□□ -1.78
RNU4-53P-201ENST00000410828 PHF23Q9BUL5 403 aaPredicted RBP3.96□□□□□ -1.78
RNU4-53P-201ENST00000410828 PPP6R1Q9UPN7 881 aa3.96□□□□□ -1.78
RNU4-53P-201ENST00000410828 SAMD9Q5K651 1589 aa3.96□□□□□ -1.78
RNU4-53P-201ENST00000410828 PREX1Q8TCU6 1659 aa3.96□□□□□ -1.78
RNU4-53P-201ENST00000410828 NPATQ14207 1427 aa3.95□□□□□ -1.78
RNU4-53P-201ENST00000410828 FER1L4A9Z1Z3 1794 aa3.95□□□□□ -1.78
RNU4-53P-201ENST00000410828 MLH3Q9UHC1 1453 aa3.95□□□□□ -1.78
RNU4-53P-201ENST00000410828 ZMYM3Q14202 1370 aa3.95□□□□□ -1.78
RNU4-53P-201ENST00000410828 PIP4K2BP78356 416 aa3.95□□□□□ -1.78
RNU4-53P-201ENST00000410828 CLIP1P30622 1438 aa3.95□□□□□ -1.78
RNU4-53P-201ENST00000410828 STRCQ7RTU9 1775 aa3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 SIGLEC1Q9BZZ2 1709 aa3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 AGLP35573 1532 aa3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 CDK13Q14004 1512 aaKnown RBP3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 TROQ12816 1431 aaPredicted RBP3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 EEA1Q15075 1411 aa3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 FMN1Q68DA7 1419 aa3.94□□□□□ -1.78
RNU4-53P-201ENST00000410828 PLA2R1Q13018 1463 aa3.93□□□□□ -1.78
RNU4-53P-201ENST00000410828 UBTFP17480 764 aaKnown RBP3.93□□□□□ -1.78
RNU4-53P-201ENST00000410828 GGT6Q6P531 493 aa3.93□□□□□ -1.78
RNU4-53P-201ENST00000410828 ARHGAP5Q13017 1502 aa3.93□□□□□ -1.78
RNU4-53P-201ENST00000410828 KDM5CP41229 1560 aa3.93□□□□□ -1.78
RNU4-53P-201ENST00000410828 SPAG9O60271 1321 aaKnown RBP3.93□□□□□ -1.78
RNU4-53P-201ENST00000410828 CAMSAP1Q5T5Y3 1602 aa3.92□□□□□ -1.78
RNU4-53P-201ENST00000410828 ZNF777Q9ULD5 760 aaPredicted RBP3.92□□□□□ -1.78
RNU4-53P-201ENST00000410828 REREQ9P2R6 1566 aa3.92□□□□□ -1.78
RNU4-53P-201ENST00000410828 DIP2CQ9Y2E4 1556 aa3.92□□□□□ -1.78
RNU4-53P-201ENST00000410828 TCOF1Q13428 1488 aaKnown RBP3.92□□□□□ -1.78
RNU4-53P-201ENST00000410828 HNRNPMP52272 730 aaKnown RBP eCLIP3.91□□□□□ -1.78
RNU4-53P-201ENST00000410828 PTPRKQ15262 1439 aa3.91□□□□□ -1.78
RNU4-53P-201ENST00000410828 ANKLE2Q86XL3 938 aa3.91□□□□□ -1.78
RNU4-53P-201ENST00000410828 MED1Q15648 1581 aaPredicted RBP3.9□□□□□ -1.78
RNU4-53P-201ENST00000410828 THEMISQ8N1K5 641 aaPredicted RBP3.9□□□□□ -1.79
RNU4-53P-201ENST00000410828 EHMT2Q96KQ7 1210 aa3.9□□□□□ -1.79
RNU4-53P-201ENST00000410828 C3P01024 1663 aa3.9□□□□□ -1.79
RNU4-53P-201ENST00000410828 CPS1P31327 1500 aa3.9□□□□□ -1.79
RNU4-53P-201ENST00000410828 KIF14Q15058 1648 aa3.89□□□□□ -1.79
RNU4-53P-201ENST00000410828 ABCA6Q8N139 1617 aa3.89□□□□□ -1.79
RNU4-53P-201ENST00000410828 SENP3Q9H4L4 574 aaPredicted RBP3.89□□□□□ -1.79
RNU4-53P-201ENST00000410828 CFDP1Q9UEE9 299 aaPredicted RBP3.89□□□□□ -1.79
RNU4-53P-201ENST00000410828 SHANK2Q9UPX8 1470 aa3.89□□□□□ -1.79
RNU4-53P-201ENST00000410828 TNRQ92752 1358 aa3.89□□□□□ -1.79
RNU4-53P-201ENST00000410828 KIAA1107Q9UPP5 1409 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 A2ML1A8K2U0 1454 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 A2MP01023 1474 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 ARHGAP35Q9NRY4 1499 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 MYO5CQ9NQX4 1742 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 KIF3BO15066 747 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 FBXO31Q5XUX0 539 aaPredicted RBP3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 RGS17Q9UGC6 210 aaPredicted RBP3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 ABCC1P33527 1531 aa3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 CEP170BQ9Y4F5 1589 aaPredicted RBP3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.88□□□□□ -1.79
RNU4-53P-201ENST00000410828 PLEKHH2Q8IVE3 1493 aa3.87□□□□□ -1.79
RNU4-53P-201ENST00000410828 WASHC2CQ9Y4E1 1318 aa3.87□□□□□ -1.79
RNU4-53P-201ENST00000410828 CCNB3Q8WWL7 1395 aa3.87□□□□□ -1.79
RNU4-53P-201ENST00000410828 NPHP4O75161 1426 aaPredicted RBP3.87□□□□□ -1.79
RNU4-53P-201ENST00000410828 MIA2Q96PC5 1412 aa3.87□□□□□ -1.79
RNU4-53P-201ENST00000410828 KIDINS220Q9ULH0 1771 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 CCDC18Q5T9S5 1454 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 GPATCH8Q9UKJ3 1502 aaKnown RBP3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 SAMD9LQ8IVG5 1584 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 RSPH4AQ5TD94 716 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 POTEAQ6S8J7 498 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 MROH2AA6NES4 1674 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 DHX29Q7Z478 1369 aaKnown RBP3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 CASKIN1Q8WXD9 1431 aa3.86□□□□□ -1.79
RNU4-53P-201ENST00000410828 ATP7AQ04656 1500 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 SYCP2Q9BX26 1530 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 FAM135AQ9P2D6 1515 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 MYO3AQ8NEV4 1616 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms